data_M3V # _chem_comp.id M3V _chem_comp.name "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(4-cyanophenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H16 N4 O4" _chem_comp.mon_nstd_parent_comp_id "THR, TYR, GLY" _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-21 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 328.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M3V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6OA8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M3V N1 N N 0 1 N N N Y Y N 74.945 -1.922 12.512 -1.122 2.311 1.380 N M3V 1 M3V CA1 CA C 0 1 N N R Y N N 73.552 -2.308 12.417 -1.976 1.733 0.333 CA M3V 2 M3V C3 C C 0 1 N N N Y N Y 72.016 -0.559 9.499 -4.197 -1.143 0.852 C M3V 3 M3V O3 O O 0 1 N N N Y N Y 72.120 0.257 8.516 -3.435 -1.408 1.752 O M3V 4 M3V CB1 CB1 C 0 1 N N R N N N 73.202 -3.538 13.260 -2.002 2.667 -0.878 CB1 M3V 5 M3V CB2 CB2 C 0 1 N N N N N N 70.794 1.005 14.979 1.173 -1.870 -0.724 CB2 M3V 6 M3V CG1 CG1 C 0 1 N N N N N N 74.072 -4.701 12.812 -2.442 4.064 -0.435 CG1 M3V 7 M3V OG1 OG1 O 0 1 N N N N N N 73.443 -3.335 14.622 -0.696 2.739 -1.453 OG1 M3V 8 M3V CG2 CG2 C 0 1 Y N N N N N 70.679 0.612 16.453 2.446 -1.236 -0.364 CG2 M3V 9 M3V CD1 CD1 C 0 1 Y N N N N N 71.231 -0.544 16.985 2.471 0.104 0.047 CD1 M3V 10 M3V CD2 CD2 C 0 1 Y N N N N N 69.962 1.476 17.260 3.637 -1.972 -0.425 CD2 M3V 11 M3V CE1 CE1 C 0 1 Y N N N N N 71.069 -0.820 18.336 3.657 0.692 0.382 CE1 M3V 12 M3V CE2 CE2 C 0 1 Y N N N N N 69.791 1.210 18.601 4.822 -1.380 -0.090 CE2 M3V 13 M3V CZ CZ C 0 1 Y N N N N N 70.344 0.062 19.129 4.846 -0.041 0.314 CZ M3V 14 M3V C1 C1 C 0 1 N N N Y N N 72.712 -1.112 12.844 -1.426 0.391 -0.079 C1 M3V 15 M3V C2 C2 C 0 1 N N N Y N N 71.669 0.950 12.618 -1.377 -1.709 -0.745 C2 M3V 16 M3V CA2 CA2 C 0 1 N N N Y N N 71.488 0.364 14.007 -0.010 -1.190 -0.540 CA2 M3V 17 M3V CA3 CA3 C 0 1 N N N Y N N 72.975 -0.049 10.571 -3.660 -0.704 -0.486 CA3 M3V 18 M3V CN CN C 0 1 N N N N N N 70.133 -0.195 20.609 6.089 0.577 0.664 CN M3V 19 M3V N2 N2 N 0 1 N N N Y N N 72.135 -0.852 14.025 -0.163 0.104 -0.131 N2 M3V 20 M3V N3 N3 N 0 1 N N N Y N N 72.465 -0.088 11.918 -2.196 -0.678 -0.439 N3 M3V 21 M3V N40 N40 N 0 1 N N N N N N 69.948 -0.358 21.710 7.075 1.068 0.942 N40 M3V 22 M3V O2 O2 O 0 1 N N N Y N N 71.276 1.964 12.160 -1.697 -2.824 -1.112 O2 M3V 23 M3V H H H 0 1 N N N Y Y N 75.524 -2.690 12.237 -1.139 1.745 2.214 H M3V 24 M3V H2 H2 H 0 1 N Y N Y Y N 75.117 -1.143 11.909 -0.178 2.437 1.047 H2 M3V 25 M3V HA1 HA H 0 1 N N N Y N N 73.313 -2.536 11.368 -2.988 1.608 0.718 HA M3V 26 M3V H8 H8 H 0 1 N N N N N N 72.147 -3.796 13.088 -2.704 2.283 -1.618 H8 M3V 27 M3V H9 H9 H 0 1 N N N N N N 70.261 1.895 14.678 1.163 -2.869 -1.132 H9 M3V 28 M3V HG21 HG21 H 0 0 N N N N N N 73.830 -5.592 13.410 -3.438 4.009 0.003 HG21 M3V 29 M3V HG22 HG22 H 0 0 N N N N N N 73.884 -4.911 11.749 -1.740 4.448 0.305 HG22 M3V 30 M3V HG23 HG23 H 0 0 N N N N N N 75.132 -4.441 12.952 -2.461 4.730 -1.298 HG23 M3V 31 M3V HG1 HG1 H 0 1 N N N N N N 73.213 -4.120 15.105 -0.638 3.315 -2.227 HG1 M3V 32 M3V H14 H14 H 0 1 N N N N N N 71.783 -1.224 16.353 1.553 0.671 0.099 H14 M3V 33 M3V H15 H15 H 0 1 N N N N N N 69.531 2.370 16.834 3.619 -3.005 -0.737 H15 M3V 34 M3V H16 H16 H 0 1 N N N N N N 71.502 -1.711 18.766 3.678 1.724 0.698 H16 M3V 35 M3V H17 H17 H 0 1 N N N N N N 69.233 1.889 19.228 5.740 -1.946 -0.138 H17 M3V 36 M3V HA31 H18 H 0 1 N N N Y N N 73.886 -0.665 10.534 -3.987 -1.402 -1.256 H18 M3V 37 M3V HA32 H19 H 0 1 N N N Y N N 73.228 0.995 10.333 -4.034 0.294 -0.717 H19 M3V 38 M3V OXT OXT O 0 1 N Y N Y N Y 70.894 -1.231 9.610 -5.522 -1.241 1.044 OXT M3V 39 M3V HXT HXT H 0 1 N Y N Y N Y 70.308 -0.989 8.903 -5.819 -1.527 1.918 HXT M3V 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M3V O3 C3 DOUB N N 1 M3V C3 CA3 SING N N 2 M3V CA3 N3 SING N N 3 M3V N3 C2 SING N N 4 M3V N3 C1 SING N N 5 M3V O2 C2 DOUB N N 6 M3V CA1 N1 SING N N 7 M3V CA1 C1 SING N N 8 M3V CA1 CB1 SING N N 9 M3V C2 CA2 SING N N 10 M3V CG1 CB1 SING N N 11 M3V C1 N2 DOUB N N 12 M3V CB1 OG1 SING N N 13 M3V CA2 N2 SING N N 14 M3V CA2 CB2 DOUB N Z 15 M3V CB2 CG2 SING N N 16 M3V CG2 CD1 DOUB Y N 17 M3V CG2 CD2 SING Y N 18 M3V CD1 CE1 SING Y N 19 M3V CD2 CE2 DOUB Y N 20 M3V CE1 CZ DOUB Y N 21 M3V CE2 CZ SING Y N 22 M3V CZ CN SING N N 23 M3V CN N40 TRIP N N 24 M3V N1 H SING N N 25 M3V N1 H2 SING N N 26 M3V CA1 HA1 SING N N 27 M3V CB1 H8 SING N N 28 M3V CB2 H9 SING N N 29 M3V CG1 HG21 SING N N 30 M3V CG1 HG22 SING N N 31 M3V CG1 HG23 SING N N 32 M3V OG1 HG1 SING N N 33 M3V CD1 H14 SING N N 34 M3V CD2 H15 SING N N 35 M3V CE1 H16 SING N N 36 M3V CE2 H17 SING N N 37 M3V CA3 HA31 SING N N 38 M3V CA3 HA32 SING N N 39 M3V C3 OXT SING N N 40 M3V OXT HXT SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M3V SMILES ACDLabs 12.01 "NC(C2=NC(=[C@H]c1ccc(cc1)C#N)C(N2CC(O)=O)=O)C(O)C" M3V InChI InChI 1.03 "InChI=1S/C16H16N4O4/c1-9(21)14(18)15-19-12(16(24)20(15)8-13(22)23)6-10-2-4-11(7-17)5-3-10/h2-6,9,14,21H,8,18H2,1H3,(H,22,23)/b12-6-/t9-,14+/m1/s1" M3V InChIKey InChI 1.03 IPIWCCQKJIIXPN-XPXYSCHSSA-N M3V SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H](N)C1=NC(=C\c2ccc(cc2)C#N)/C(=O)N1CC(O)=O" M3V SMILES CACTVS 3.385 "C[CH](O)[CH](N)C1=NC(=Cc2ccc(cc2)C#N)C(=O)N1CC(O)=O" M3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C1=N/C(=C\c2ccc(cc2)C#N)/C(=O)N1CC(=O)O)N)O" M3V SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C1=NC(=Cc2ccc(cc2)C#N)C(=O)N1CC(=O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M3V "SYSTEMATIC NAME" ACDLabs 12.01 "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(4-cyanophenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid" M3V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{Z})-2-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-4-[(4-cyanophenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M3V "Create component" 2019-03-21 RCSB M3V "Initial release" 2020-08-05 RCSB M3V "Modify backbone" 2023-11-03 PDBE #