data_M4Y # _chem_comp.id M4Y _chem_comp.name parthenolide _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H20 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(1aR,4E,7aS,10aS,10bR)-1a,5-dimethyl-8-methylidene-2,3,6,7,7a,8,10a,10b-octahydrooxireno[9,10]cyclodeca[1,2-b]furan-9(1 aH)-one ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.317 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M4Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6OCH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M4Y C11 C1 C 0 1 N N N N N N 5.616 11.377 4.777 5.616 11.377 4.777 C11 M4Y 1 M4Y C12 C2 C 0 1 N N N N N N 6.183 10.437 5.802 6.183 10.437 5.802 C12 M4Y 2 M4Y C13 C3 C 0 1 N N N N N N 4.628 12.344 5.393 4.628 12.344 5.393 C13 M4Y 3 M4Y C14 C4 C 0 1 N N N N N N 8.868 11.629 0.625 8.868 11.629 0.625 C14 M4Y 4 M4Y C1 C5 C 0 1 N N N N N N 9.923 13.349 2.116 9.923 13.349 2.116 C1 M4Y 5 M4Y C10 C6 C 0 1 N N N N N N 8.847 12.742 1.638 8.847 12.742 1.638 C10 M4Y 6 M4Y C15 C7 C 0 1 N N N N N N 10.581 9.812 3.032 10.581 9.812 3.032 C15 M4Y 7 M4Y C2 C8 C 0 1 N N N N N N 11.301 12.766 2.249 11.301 12.766 2.249 C2 M4Y 8 M4Y C3 C9 C 0 1 N N N N N N 11.512 12.123 3.639 11.512 12.123 3.639 C3 M4Y 9 M4Y C4 C10 C 0 1 N N R N N N 10.512 11.025 3.915 10.512 11.025 3.915 C4 M4Y 10 M4Y C5 C11 C 0 1 N N R N N N 9.287 11.464 4.598 9.287 11.464 4.598 C5 M4Y 11 M4Y C6 C12 C 0 1 N N S N N N 7.932 10.890 4.392 7.932 10.890 4.392 C6 M4Y 12 M4Y C7 C13 C 0 1 N N S N N N 6.858 11.950 4.095 6.858 11.950 4.095 C7 M4Y 13 M4Y C8 C14 C 0 1 N N N N N N 6.563 12.267 2.620 6.563 12.267 2.620 C8 M4Y 14 M4Y C9 C15 C 0 1 N N N N N N 7.478 13.289 1.930 7.478 13.289 1.930 C9 M4Y 15 M4Y O1 O1 O 0 1 N N N N N N 7.517 10.346 5.680 7.517 10.346 5.680 O1 M4Y 16 M4Y O2 O2 O 0 1 N N N N N N 5.598 9.819 6.650 5.598 9.819 6.650 O2 M4Y 17 M4Y O3 O3 O 0 1 N N N N N N 10.274 10.706 5.317 10.274 10.706 5.317 O3 M4Y 18 M4Y H13C H2 H 0 0 N N N N N N 4.413 12.296 6.450 4.413 12.296 6.450 H13C M4Y 19 M4Y H2 H3 H 0 1 N N N N N N 4.138 13.082 4.775 4.138 13.082 4.775 H2 M4Y 20 M4Y H14B H5 H 0 0 N N N N N N 9.903 11.290 0.473 9.903 11.290 0.473 H14B M4Y 21 M4Y H14C H6 H 0 0 N N N N N N 8.258 10.790 0.990 8.258 10.790 0.990 H14C M4Y 22 M4Y H14A H7 H 0 0 N N N N N N 8.458 11.993 -0.328 8.458 11.993 -0.328 H14A M4Y 23 M4Y H1 H8 H 0 1 N N N N N N 9.796 14.370 2.445 9.796 14.370 2.444 H1 M4Y 24 M4Y H15B H11 H 0 0 N N N N N N 9.806 9.093 3.335 9.806 9.093 3.335 H15B M4Y 25 M4Y H15C H12 H 0 0 N N N N N N 10.416 10.110 1.986 10.416 10.110 1.986 H15C M4Y 26 M4Y H15A H13 H 0 0 N N N N N N 11.572 9.345 3.128 11.572 9.344 3.128 H15A M4Y 27 M4Y H2A H14 H 0 1 N N N N N N 11.440 11.997 1.475 11.440 11.997 1.475 H2A M4Y 28 M4Y H2B H15 H 0 1 N N N N N N 12.043 13.566 2.109 12.043 13.566 2.109 H2B M4Y 29 M4Y H3B H16 H 0 1 N N N N N N 12.526 11.699 3.683 12.526 11.699 3.683 H3B M4Y 30 M4Y H3A H17 H 0 1 N N N N N N 11.406 12.901 4.409 11.406 12.901 4.409 H3A M4Y 31 M4Y H5 H18 H 0 1 N N N N N N 9.276 12.537 4.840 9.276 12.537 4.840 H5 M4Y 32 M4Y H6 H19 H 0 1 N N N N N N 7.940 10.119 3.608 7.940 10.118 3.608 H6 M4Y 33 M4Y H7 H20 H 0 1 N N N N N N 7.139 12.884 4.604 7.139 12.884 4.604 H7 M4Y 34 M4Y H8A H21 H 0 1 N N N N N N 5.534 12.651 2.563 5.534 12.651 2.563 H8A M4Y 35 M4Y H8B H22 H 0 1 N N N N N N 6.635 11.325 2.057 6.635 11.325 2.057 H8B M4Y 36 M4Y H9A H23 H 0 1 N N N N N N 7.583 14.166 2.586 7.583 14.166 2.586 H9A M4Y 37 M4Y H9B H24 H 0 1 N N N N N N 7.012 13.594 0.981 7.012 13.594 0.982 H9B M4Y 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M4Y C14 C10 SING N N 1 M4Y C10 C9 SING N N 2 M4Y C10 C1 DOUB N E 3 M4Y C9 C8 SING N N 4 M4Y C1 C2 SING N N 5 M4Y C2 C3 SING N N 6 M4Y C8 C7 SING N N 7 M4Y C15 C4 SING N N 8 M4Y C3 C4 SING N N 9 M4Y C4 C5 SING N N 10 M4Y C4 O3 SING N N 11 M4Y C7 C6 SING N N 12 M4Y C7 C11 SING N N 13 M4Y C6 C5 SING N N 14 M4Y C6 O1 SING N N 15 M4Y C5 O3 SING N N 16 M4Y C11 C13 DOUB N N 17 M4Y C11 C12 SING N N 18 M4Y O1 C12 SING N N 19 M4Y C12 O2 DOUB N N 20 M4Y C13 H13C SING N N 21 M4Y C13 H2 SING N N 22 M4Y C14 H14B SING N N 23 M4Y C14 H14C SING N N 24 M4Y C14 H14A SING N N 25 M4Y C1 H1 SING N N 26 M4Y C15 H15B SING N N 27 M4Y C15 H15C SING N N 28 M4Y C15 H15A SING N N 29 M4Y C2 H2A SING N N 30 M4Y C2 H2B SING N N 31 M4Y C3 H3B SING N N 32 M4Y C3 H3A SING N N 33 M4Y C5 H5 SING N N 34 M4Y C6 H6 SING N N 35 M4Y C7 H7 SING N N 36 M4Y C8 H8A SING N N 37 M4Y C8 H8B SING N N 38 M4Y C9 H9A SING N N 39 M4Y C9 H9B SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M4Y SMILES ACDLabs 12.01 "C1(=C)\C(=O)OC2C3C(C)(CCC=C(C)CCC12)O3" M4Y InChI InChI 1.03 "InChI=1S/C15H20O3/c1-9-5-4-8-15(3)13(18-15)12-11(7-6-9)10(2)14(16)17-12/h5,11-13H,2,4,6-8H2,1,3H3/b9-5+/t11-,12-,13+,15+/m0/s1" M4Y InChIKey InChI 1.03 KTEXNACQROZXEV-PVLRGYAZSA-N M4Y SMILES_CANONICAL CACTVS 3.385 "C\C1=C/CC[C@@]2(C)O[C@@H]2[C@H]3OC(=O)C(=C)[C@@H]3CC1" M4Y SMILES CACTVS 3.385 "CC1=CCC[C]2(C)O[CH]2[CH]3OC(=O)C(=C)[CH]3CC1" M4Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C/1=C\CC[C@@]2([C@H](O2)[C@@H]3[C@@H](CC1)C(=C)C(=O)O3)C" M4Y SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CCCC2(C(O2)C3C(CC1)C(=C)C(=O)O3)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M4Y "SYSTEMATIC NAME" ACDLabs 12.01 "(1aR,4E,7aS,10aS,10bR)-1a,5-dimethyl-8-methylidene-2,3,6,7,7a,8,10a,10b-octahydrooxireno[9,10]cyclodeca[1,2-b]furan-9(1aH)-one" M4Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{R},4~{R},7~{E},11~{S})-4,8-dimethyl-12-methylidene-3,14-dioxatricyclo[9.3.0.0^{2,4}]tetradec-7-en-13-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M4Y "Create component" 2019-03-25 RCSB M4Y "Modify name" 2019-03-25 RCSB M4Y "Initial release" 2019-06-26 RCSB M4Y "Modify synonyms" 2020-06-05 PDBE M4Y "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id M4Y _pdbx_chem_comp_synonyms.name "(1aR,4E,7aS,10aS,10bR)-1a,5-dimethyl-8-methylidene-2,3,6,7,7a,8,10a,10b-octahydrooxireno[9,10]cyclodeca[1,2-b]furan-9(1aH)-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id M4Y _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #