data_M5D # _chem_comp.id M5D _chem_comp.name "5-{(3R)-3-methyl-4-[(1R,2R)-2-methylcyclopropane-1-carbonyl]piperazin-1-yl}-3-(1-methyl-1H-pyrazol-4-yl)pyrazine-2-carbonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-26 _chem_comp.pdbx_modified_date 2019-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 365.432 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M5D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6OCU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M5D C1 C1 C 0 1 Y N N 36.205 14.221 33.567 2.869 0.301 0.099 C1 M5D 1 M5D C2 C2 C 0 1 Y N N 35.886 12.909 33.123 3.152 1.537 -0.510 C2 M5D 2 M5D C4 C3 C 0 1 Y N N 37.861 12.125 34.041 0.955 2.156 -0.280 C4 M5D 3 M5D C5 C4 C 0 1 Y N N 38.209 13.418 34.498 0.670 0.928 0.326 C5 M5D 4 M5D C8 C5 C 0 1 N N N 39.904 15.081 35.385 -1.523 1.771 0.458 C8 M5D 5 M5D C12 C6 C 0 1 N N N 41.708 13.118 35.942 -2.463 -0.966 0.766 C12 M5D 6 M5D C16 C7 C 0 1 N N R 43.326 14.412 32.646 -5.109 -1.329 -0.252 C16 M5D 7 M5D C18 C8 C 0 1 N N N 44.622 14.103 31.891 -5.293 -1.644 -1.738 C18 M5D 8 M5D C19 C9 C 0 1 N N R 44.535 15.343 32.788 -6.516 -1.426 -0.845 C19 M5D 9 M5D C21 C10 C 0 1 N N N 44.521 16.707 32.097 -7.353 -2.654 -0.481 C21 M5D 10 M5D C23 C11 C 0 1 N N N 34.692 12.583 32.408 4.483 1.835 -0.947 C23 M5D 11 M5D C30 C12 C 0 1 N N N 32.291 17.270 32.864 6.962 -2.473 -0.611 C30 M5D 12 M5D N3 N1 N 0 1 Y N N 36.736 11.917 33.386 2.178 2.430 -0.680 N3 M5D 13 M5D N6 N2 N 0 1 Y N N 37.346 14.408 34.239 1.631 0.032 0.501 N6 M5D 14 M5D N7 N3 N 0 1 N N N 39.407 13.690 35.192 -0.621 0.648 0.746 N7 M5D 15 M5D C9 C13 C 0 1 N N R 41.261 15.224 34.655 -2.890 1.500 1.095 C9 M5D 16 M5D N11 N4 N 0 1 N N N 42.035 13.963 34.771 -3.367 0.186 0.636 N11 M5D 17 M5D C13 C14 C 0 1 N N N 40.267 12.613 35.753 -1.112 -0.598 0.142 C13 M5D 18 M5D C14 C15 C 0 1 N N N 42.972 13.571 33.855 -4.600 0.043 0.110 C14 M5D 19 M5D O15 O1 O 0 1 N N N 43.566 12.515 33.998 -5.299 1.017 -0.071 O15 M5D 20 M5D C22 C16 C 0 1 N N N 42.064 16.406 35.207 -3.881 2.585 0.666 C22 M5D 21 M5D N24 N5 N 0 1 N N N 33.795 12.185 31.833 5.539 2.071 -1.293 N24 M5D 22 M5D C25 C17 C 0 1 Y N N 35.346 15.415 33.357 3.945 -0.699 0.286 C25 M5D 23 M5D C26 C18 C 0 1 Y N N 35.822 16.741 33.332 4.076 -1.592 1.370 C26 M5D 24 M5D N27 N6 N 0 1 Y N N 34.811 17.546 33.153 5.148 -2.311 1.175 N27 M5D 25 M5D N28 N7 N 0 1 Y N N 33.653 16.773 33.058 5.740 -1.913 -0.030 N28 M5D 26 M5D C29 C19 C 0 1 Y N N 33.988 15.481 33.191 4.991 -0.930 -0.564 C29 M5D 27 M5D H1 H1 H 0 1 N N N 38.527 11.296 34.232 0.168 2.882 -0.419 H1 M5D 28 M5D H2 H2 H 0 1 N N N 40.037 15.282 36.458 -1.105 2.689 0.872 H2 M5D 29 M5D H3 H3 H 0 1 N N N 39.180 15.795 34.966 -1.639 1.878 -0.620 H3 M5D 30 M5D H4 H4 H 0 1 N N N 42.401 12.266 35.997 -2.326 -1.207 1.820 H4 M5D 31 M5D H5 H5 H 0 1 N N N 41.781 13.710 36.866 -2.887 -1.825 0.246 H5 M5D 32 M5D H6 H6 H 0 1 N N N 42.487 14.789 32.043 -4.780 -2.139 0.397 H6 M5D 33 M5D H7 H7 H 0 1 N N N 45.244 13.248 32.194 -5.046 -0.859 -2.453 H7 M5D 34 M5D H8 H8 H 0 1 N N N 44.662 14.217 30.798 -5.085 -2.662 -2.066 H8 M5D 35 M5D H9 H9 H 0 1 N N N 45.078 15.289 33.743 -7.074 -0.498 -0.973 H9 M5D 36 M5D H10 H10 H 0 1 N N N 44.456 17.502 32.855 -7.492 -2.691 0.600 H10 M5D 37 M5D H11 H11 H 0 1 N N N 45.445 16.832 31.513 -8.325 -2.589 -0.971 H11 M5D 38 M5D H12 H12 H 0 1 N N N 43.652 16.769 31.426 -6.838 -3.555 -0.812 H12 M5D 39 M5D H13 H13 H 0 1 N N N 32.306 18.368 32.802 6.705 -3.308 -1.262 H13 M5D 40 M5D H14 H14 H 0 1 N N N 31.879 16.856 31.932 7.474 -1.704 -1.191 H14 M5D 41 M5D H15 H15 H 0 1 N N N 31.663 16.960 33.712 7.618 -2.822 0.187 H15 M5D 42 M5D H16 H16 H 0 1 N N N 41.055 15.416 33.592 -2.795 1.496 2.180 H16 M5D 43 M5D H17 H17 H 0 1 N N N 39.863 12.297 36.726 -0.395 -1.398 0.326 H17 M5D 44 M5D H18 H18 H 0 1 N N N 40.271 11.757 35.063 -1.234 -0.458 -0.932 H18 M5D 45 M5D H19 H19 H 0 1 N N N 41.472 17.328 35.111 -4.824 2.445 1.195 H19 M5D 46 M5D H20 H20 H 0 1 N N N 42.296 16.228 36.267 -3.472 3.566 0.906 H20 M5D 47 M5D H21 H21 H 0 1 N N N 43.000 16.510 34.639 -4.053 2.515 -0.408 H21 M5D 48 M5D H22 H22 H 0 1 N N N 36.853 17.041 33.443 3.406 -1.666 2.214 H22 M5D 49 M5D H23 H23 H 0 1 N N N 33.308 14.642 33.171 5.182 -0.416 -1.494 H23 M5D 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M5D N24 C23 TRIP N N 1 M5D C18 C16 SING N N 2 M5D C18 C19 SING N N 3 M5D C21 C19 SING N N 4 M5D C23 C2 SING N N 5 M5D C16 C19 SING N N 6 M5D C16 C14 SING N N 7 M5D C30 N28 SING N N 8 M5D N28 N27 SING Y N 9 M5D N28 C29 SING Y N 10 M5D C2 N3 DOUB Y N 11 M5D C2 C1 SING Y N 12 M5D N27 C26 DOUB Y N 13 M5D C29 C25 DOUB Y N 14 M5D C26 C25 SING Y N 15 M5D C25 C1 SING N N 16 M5D N3 C4 SING Y N 17 M5D C1 N6 DOUB Y N 18 M5D C14 O15 DOUB N N 19 M5D C14 N11 SING N N 20 M5D C4 C5 DOUB Y N 21 M5D N6 C5 SING Y N 22 M5D C5 N7 SING N N 23 M5D C9 N11 SING N N 24 M5D C9 C22 SING N N 25 M5D C9 C8 SING N N 26 M5D N11 C12 SING N N 27 M5D N7 C8 SING N N 28 M5D N7 C13 SING N N 29 M5D C13 C12 SING N N 30 M5D C4 H1 SING N N 31 M5D C8 H2 SING N N 32 M5D C8 H3 SING N N 33 M5D C12 H4 SING N N 34 M5D C12 H5 SING N N 35 M5D C16 H6 SING N N 36 M5D C18 H7 SING N N 37 M5D C18 H8 SING N N 38 M5D C19 H9 SING N N 39 M5D C21 H10 SING N N 40 M5D C21 H11 SING N N 41 M5D C21 H12 SING N N 42 M5D C30 H13 SING N N 43 M5D C30 H14 SING N N 44 M5D C30 H15 SING N N 45 M5D C9 H16 SING N N 46 M5D C13 H17 SING N N 47 M5D C13 H18 SING N N 48 M5D C22 H19 SING N N 49 M5D C22 H20 SING N N 50 M5D C22 H21 SING N N 51 M5D C26 H22 SING N N 52 M5D C29 H23 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M5D SMILES ACDLabs 12.01 "c1(nc(cnc1C#N)N2CC(N(CC2)C(C3C(C3)C)=O)C)c4cnn(C)c4" M5D InChI InChI 1.03 "InChI=1S/C19H23N7O/c1-12-6-15(12)19(27)26-5-4-25(10-13(26)2)17-9-21-16(7-20)18(23-17)14-8-22-24(3)11-14/h8-9,11-13,15H,4-6,10H2,1-3H3/t12-,13-,15-/m1/s1" M5D InChIKey InChI 1.03 GXEXIUKEWXZCEF-UMVBOHGHSA-N M5D SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1C[C@H]1C(=O)N2CCN(C[C@H]2C)c3cnc(C#N)c(n3)c4cnn(C)c4" M5D SMILES CACTVS 3.385 "C[CH]1C[CH]1C(=O)N2CCN(C[CH]2C)c3cnc(C#N)c(n3)c4cnn(C)c4" M5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1C[C@H]1C(=O)N2CCN(C[C@H]2C)c3cnc(c(n3)c4cnn(c4)C)C#N" M5D SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC1C(=O)N2CCN(CC2C)c3cnc(c(n3)c4cnn(c4)C)C#N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M5D "SYSTEMATIC NAME" ACDLabs 12.01 "5-{(3R)-3-methyl-4-[(1R,2R)-2-methylcyclopropane-1-carbonyl]piperazin-1-yl}-3-(1-methyl-1H-pyrazol-4-yl)pyrazine-2-carbonitrile" M5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(3~{R})-3-methyl-4-[(1~{R},2~{R})-2-methylcyclopropyl]carbonyl-piperazin-1-yl]-3-(1-methylpyrazol-4-yl)pyrazine-2-carbonitrile" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M5D "Create component" 2019-03-26 RCSB M5D "Initial release" 2019-12-11 RCSB ##