data_M5F # _chem_comp.id M5F _chem_comp.name "1-[(2S)-2,3-diaminopropyl]-5-fluoropyrimidine-2,4(1H,3H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H11 F N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-07-18 _chem_comp.pdbx_modified_date 2015-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.186 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M5F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4U2K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M5F F5 F1 F 0 1 N N N 15.349 36.147 -14.263 -2.936 -2.021 -0.135 F5 M5F 1 M5F C5 C1 C 0 1 N N N 14.965 35.524 -13.101 -2.112 -0.962 0.025 C5 M5F 2 M5F C6 C2 C 0 1 N N N 15.710 35.624 -11.888 -0.846 -1.139 0.459 C6 M5F 3 M5F N1 N1 N 0 1 N N N 15.224 34.962 -10.791 -0.024 -0.052 0.615 N1 M5F 4 M5F CAB C3 C 0 1 N N N 15.961 34.983 -9.517 1.350 -0.243 1.086 CAB M5F 5 M5F CAM C4 C 0 1 N N S 16.559 33.620 -9.172 2.276 -0.452 -0.115 CAM M5F 6 M5F CAL C5 C 0 1 N N N 16.883 33.612 -7.677 3.726 -0.527 0.367 CAL M5F 7 M5F NAJ N2 N 0 1 N N N 16.545 32.394 -6.917 4.623 -0.607 -0.794 NAJ M5F 8 M5F NAA N3 N 0 1 N N N 17.682 33.249 -9.958 2.127 0.672 -1.049 NAA M5F 9 M5F C2 C6 C 0 1 N N N 14.021 34.191 -10.833 -0.468 1.187 0.340 C2 M5F 10 M5F O2 O1 O 0 1 N N N 13.597 33.590 -9.823 0.278 2.137 0.485 O2 M5F 11 M5F N3 N4 N 0 1 N N N 13.321 34.116 -11.997 -1.725 1.392 -0.095 N3 M5F 12 M5F C4 C7 C 0 1 N N N 13.746 34.749 -13.127 -2.564 0.350 -0.266 C4 M5F 13 M5F O4 O2 O 0 1 N N N 13.046 34.659 -14.247 -3.700 0.535 -0.664 O4 M5F 14 M5F H1 H1 H 0 1 N N N 16.622 36.200 -11.836 -0.482 -2.131 0.683 H1 M5F 15 M5F H2 H2 H 0 1 N N N 16.776 35.718 -9.591 1.670 0.638 1.642 H2 M5F 16 M5F H3 H3 H 0 1 N N N 15.271 35.280 -8.714 1.394 -1.118 1.735 H3 M5F 17 M5F H4 H4 H 0 1 N N N 15.767 32.874 -9.331 2.012 -1.382 -0.620 H4 M5F 18 M5F H5 H5 H 0 1 N N N 17.966 33.776 -7.573 3.963 0.364 0.948 H5 M5F 19 M5F H6 H6 H 0 1 N N N 16.339 34.450 -7.217 3.857 -1.412 0.989 H6 M5F 20 M5F H7 H7 H 0 1 N N N 16.805 32.515 -5.959 5.588 -0.658 -0.502 H7 M5F 21 M5F H8 H8 H 0 1 N N N 15.561 32.226 -6.977 4.383 -1.390 -1.383 H8 M5F 22 M5F H10 H10 H 0 1 N N N 18.009 32.349 -9.669 1.194 0.704 -1.431 H10 M5F 23 M5F H11 H11 H 0 1 N N N 17.417 33.213 -10.922 2.366 1.545 -0.604 H11 M5F 24 M5F H13 H13 H 0 1 N N N 12.475 33.584 -12.024 -2.029 2.293 -0.289 H13 M5F 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M5F F5 C5 SING N N 1 M5F O4 C4 DOUB N N 2 M5F C4 C5 SING N N 3 M5F C4 N3 SING N N 4 M5F C5 C6 DOUB N N 5 M5F N3 C2 SING N N 6 M5F C6 N1 SING N N 7 M5F C2 N1 SING N N 8 M5F C2 O2 DOUB N N 9 M5F N1 CAB SING N N 10 M5F NAA CAM SING N N 11 M5F CAB CAM SING N N 12 M5F CAM CAL SING N N 13 M5F CAL NAJ SING N N 14 M5F C6 H1 SING N N 15 M5F CAB H2 SING N N 16 M5F CAB H3 SING N N 17 M5F CAM H4 SING N N 18 M5F CAL H5 SING N N 19 M5F CAL H6 SING N N 20 M5F NAJ H7 SING N N 21 M5F NAJ H8 SING N N 22 M5F NAA H10 SING N N 23 M5F NAA H11 SING N N 24 M5F N3 H13 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M5F SMILES ACDLabs 12.01 "FC1=CN(C(=O)NC1=O)CC(N)CN" M5F InChI InChI 1.03 "InChI=1S/C7H11FN4O2/c8-5-3-12(2-4(10)1-9)7(14)11-6(5)13/h3-4H,1-2,9-10H2,(H,11,13,14)/t4-/m0/s1" M5F InChIKey InChI 1.03 ZBKWVMMCABYTAU-BYPYZUCNSA-N M5F SMILES_CANONICAL CACTVS 3.385 "NC[C@H](N)CN1C=C(F)C(=O)NC1=O" M5F SMILES CACTVS 3.385 "NC[CH](N)CN1C=C(F)C(=O)NC1=O" M5F SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1=C(C(=O)NC(=O)N1C[C@H](CN)N)F" M5F SMILES "OpenEye OEToolkits" 1.9.2 "C1=C(C(=O)NC(=O)N1CC(CN)N)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M5F "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(2S)-2,3-diaminopropyl]-5-fluoropyrimidine-2,4(1H,3H)-dione" M5F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-[(2S)-2,3-bis(azanyl)propyl]-5-fluoranyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M5F "Create component" 2014-07-18 EBI M5F "Modify descriptor" 2014-09-05 RCSB M5F "Initial release" 2015-07-29 RCSB #