data_M5O # _chem_comp.id M5O _chem_comp.name "(2~{S},3~{R})-2-[3,4-bis(oxidanyl)phenyl]-3,4-dihydro-2~{H}-chromene-3,5,7-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H14 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(-)-catechin" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-22 _chem_comp.pdbx_modified_date 2023-08-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M5O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AGQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M5O OAB O1 O 0 1 N N N -8.985 12.082 11.386 4.898 -2.601 -0.307 OAB M5O 1 M5O CAT C1 C 0 1 Y N N -7.947 11.202 11.255 4.079 -1.523 -0.188 CAT M5O 2 M5O CAK C2 C 0 1 Y N N -7.441 10.943 9.993 4.618 -0.254 -0.038 CAK M5O 3 M5O CAY C3 C 0 1 Y N N -6.419 10.056 9.864 3.780 0.842 0.081 CAY M5O 4 M5O OAG O2 O 0 1 N N N -5.859 9.808 8.653 4.309 2.086 0.228 OAG M5O 5 M5O CBD C4 C 0 1 Y N N -5.843 9.419 10.970 2.400 0.676 0.050 CBD M5O 6 M5O CAP C5 C 0 1 N N N -4.764 8.387 10.799 1.521 1.895 0.172 CAP M5O 7 M5O CAN C6 C 0 1 Y N N -7.424 10.585 12.371 2.704 -1.689 -0.220 CAN M5O 8 M5O CBC C7 C 0 1 Y N N -6.367 9.701 12.216 1.862 -0.590 -0.095 CBC M5O 9 M5O OAR O3 O 0 1 N N N -5.827 9.197 13.379 0.519 -0.798 -0.118 OAR M5O 10 M5O CBF C8 C 0 1 N N S -4.454 8.669 13.253 -0.326 0.325 -0.372 CBF M5O 11 M5O CBE C9 C 0 1 N N R -4.447 7.652 12.094 0.101 1.470 0.554 CBE M5O 12 M5O OAQ O4 O 0 1 N N N -3.197 6.998 12.014 -0.791 2.576 0.396 OAQ M5O 13 M5O CBA C10 C 0 1 Y N N -3.999 8.208 14.619 -1.760 -0.046 -0.094 CBA M5O 14 M5O CAO C11 C 0 1 Y N N -4.744 7.286 15.326 -2.763 0.399 -0.935 CAO M5O 15 M5O CAV C12 C 0 1 Y N N -4.360 6.918 16.602 -4.082 0.059 -0.680 CAV M5O 16 M5O OAD O5 O 0 1 N N N -5.075 6.052 17.388 -5.070 0.495 -1.507 OAD M5O 17 M5O CAU C13 C 0 1 Y N N -3.167 7.405 17.129 -4.393 -0.731 0.423 CAU M5O 18 M5O OAC O6 O 0 1 N N N -2.740 7.048 18.386 -5.686 -1.068 0.676 OAC M5O 19 M5O CAI C14 C 0 1 Y N N -2.417 8.296 16.405 -3.383 -1.174 1.261 CAI M5O 20 M5O CAJ C15 C 0 1 Y N N -2.843 8.705 15.150 -2.069 -0.835 0.998 CAJ M5O 21 M5O H1 H1 H 0 1 N N N -9.223 12.158 12.303 5.143 -2.809 -1.219 H1 M5O 22 M5O H2 H2 H 0 1 N N N -7.851 11.438 9.125 5.690 -0.121 -0.014 H2 M5O 23 M5O H3 H3 H 0 1 N N N -5.165 9.167 8.750 4.469 2.546 -0.607 H3 M5O 24 M5O H4 H4 H 0 1 N N N -5.094 7.653 10.049 1.921 2.556 0.940 H4 M5O 25 M5O H5 H5 H 0 1 N N N -3.851 8.887 10.445 1.497 2.421 -0.783 H5 M5O 26 M5O H6 H6 H 0 1 N N N -7.831 10.787 13.351 2.285 -2.677 -0.341 H6 M5O 27 M5O H7 H7 H 0 1 N N N -3.800 9.502 12.954 -0.222 0.635 -1.412 H7 M5O 28 M5O H8 H8 H 0 1 N N N -5.243 6.916 12.279 0.085 1.131 1.590 H8 M5O 29 M5O H9 H9 H 0 1 N N N -3.022 6.548 12.832 -0.568 3.342 0.941 H9 M5O 30 M5O H10 H10 H 0 1 N N N -5.628 6.852 14.882 -2.519 1.012 -1.790 H10 M5O 31 M5O H11 H11 H 0 1 N N N -4.632 5.941 18.221 -5.264 -0.105 -2.240 H11 M5O 32 M5O H12 H12 H 0 1 N N N -3.353 6.430 18.765 -5.968 -1.892 0.255 H12 M5O 33 M5O H13 H13 H 0 1 N N N -1.493 8.680 16.813 -3.622 -1.786 2.118 H13 M5O 34 M5O H14 H14 H 0 1 N N N -2.258 9.420 14.590 -1.282 -1.184 1.651 H14 M5O 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M5O OAG CAY SING N N 1 M5O CAY CAK DOUB Y N 2 M5O CAY CBD SING Y N 3 M5O CAK CAT SING Y N 4 M5O CAP CBD SING N N 5 M5O CAP CBE SING N N 6 M5O CBD CBC DOUB Y N 7 M5O CAT OAB SING N N 8 M5O CAT CAN DOUB Y N 9 M5O OAQ CBE SING N N 10 M5O CBE CBF SING N N 11 M5O CBC CAN SING Y N 12 M5O CBC OAR SING N N 13 M5O CBF OAR SING N N 14 M5O CBF CBA SING N N 15 M5O CBA CAJ DOUB Y N 16 M5O CBA CAO SING Y N 17 M5O CAJ CAI SING Y N 18 M5O CAO CAV DOUB Y N 19 M5O CAI CAU DOUB Y N 20 M5O CAV CAU SING Y N 21 M5O CAV OAD SING N N 22 M5O CAU OAC SING N N 23 M5O OAB H1 SING N N 24 M5O CAK H2 SING N N 25 M5O OAG H3 SING N N 26 M5O CAP H4 SING N N 27 M5O CAP H5 SING N N 28 M5O CAN H6 SING N N 29 M5O CBF H7 SING N N 30 M5O CBE H8 SING N N 31 M5O OAQ H9 SING N N 32 M5O CAO H10 SING N N 33 M5O OAD H11 SING N N 34 M5O OAC H12 SING N N 35 M5O CAI H13 SING N N 36 M5O CAJ H14 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M5O InChI InChI 1.06 "InChI=1S/C15H14O6/c16-8-4-11(18)9-6-13(20)15(21-14(9)5-8)7-1-2-10(17)12(19)3-7/h1-5,13,15-20H,6H2/t13-,15+/m1/s1" M5O InChIKey InChI 1.06 PFTAWBLQPZVEMU-HIFRSBDPSA-N M5O SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1Cc2c(O)cc(O)cc2O[C@H]1c3ccc(O)c(O)c3" M5O SMILES CACTVS 3.385 "O[CH]1Cc2c(O)cc(O)cc2O[CH]1c3ccc(O)c(O)c3" M5O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[C@H]2[C@@H](Cc3c(cc(cc3O2)O)O)O)O)O" M5O SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2C(Cc3c(cc(cc3O2)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id M5O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R})-2-[3,4-bis(oxidanyl)phenyl]-3,4-dihydro-2~{H}-chromene-3,5,7-triol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id M5O _pdbx_chem_comp_synonyms.name "(-)-catechin" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M5O "Create component" 2022-07-22 PDBE M5O "Modify descriptor" 2022-08-22 RCSB M5O "Initial release" 2023-08-30 RCSB #