data_M5U # _chem_comp.id M5U _chem_comp.name ;dimethyl 2,2'-((12Z,122Z,4S,6Z,8E,10E,15S,17Z,19E,21E)-2,13-dioxo-3,14-dioxa-1(4,2),12(2,4)-dioxazolacyclodocosaphane-6,8,10,17,19,21-hexaene-4,15-diyl)(2S,2'S,3S,3'S,4E,4'E)-bis(3-hydroxyhex-4-enoate) ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H42 N2 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "methyl (E,2S,3S)-2-[(4S,6Z,8E,10E,18S,20Z,22E,24E)-18-[(E,2S,3S)-1-methoxy-3-oxidanyl-1-oxidanylidene-hex-4-en-2-yl]-2,16-bis(oxidanylidene)-3,13,17,27-tetraoxa-29,30-diazatricyclo[24.2.1.1^{12,15}]triaconta-1(28),6,8,10,12(30),14,20,22,24,26(29)-decaen-4-yl]-3-oxidanyl-hex-4-enoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-22 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 718.746 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M5U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AHM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M5U C10 C1 C 0 1 N N N 23.018 -31.629 -48.213 8.564 -0.959 -3.640 C10 M5U 1 M5U C13 C2 C 0 1 N N N 16.632 -28.172 -45.423 3.688 -3.489 0.670 C13 M5U 2 M5U C15 C3 C 0 1 N N N 18.465 -26.446 -44.958 1.339 -3.957 0.947 C15 M5U 3 M5U C17 C4 C 0 1 N N N 20.626 -25.398 -44.263 -0.992 -4.308 1.138 C17 M5U 4 M5U C21 C5 C 0 1 Y N N 24.796 -23.457 -43.530 -4.707 -2.496 1.060 C21 M5U 5 M5U C22 C6 C 0 1 Y N N 24.404 -23.525 -44.786 -5.476 -3.614 1.000 C22 M5U 6 M5U C24 C7 C 0 1 N N N 26.106 -22.825 -43.000 -5.155 -1.086 1.103 C24 M5U 7 M5U C28 C8 C 0 1 N N N 29.503 -23.316 -43.240 -3.376 2.142 1.206 C28 M5U 8 M5U C01 C9 C 0 1 N N N 16.803 -29.761 -50.089 2.416 -1.188 -2.606 C01 M5U 9 M5U C03 C10 C 0 1 N N N 18.771 -30.111 -48.833 4.445 -1.126 -1.358 C03 M5U 10 M5U C05 C11 C 0 1 N N S 18.328 -30.839 -47.546 5.335 -1.561 -0.222 C05 M5U 11 M5U C06 C12 C 0 1 N N S 19.271 -32.006 -47.212 6.668 -0.814 -0.304 C06 M5U 12 M5U C08 C13 C 0 1 N N N 20.571 -31.956 -48.017 7.447 -1.304 -1.497 C08 M5U 13 M5U C09 C14 C 0 1 N N N 21.717 -31.673 -47.415 7.785 -0.468 -2.447 C09 M5U 14 M5U C11 C15 C 0 1 N N S 18.288 -29.853 -46.387 4.653 -1.244 1.110 C11 M5U 15 M5U C12 C16 C 0 1 N N N 17.274 -28.718 -46.721 3.421 -2.141 1.283 C12 M5U 16 M5U C14 C17 C 0 1 N N N 17.133 -27.198 -44.668 2.677 -4.354 0.527 C14 M5U 17 M5U C16 C18 C 0 1 N N N 19.307 -26.140 -43.950 0.280 -4.793 0.774 C16 M5U 18 M5U C18 C19 C 0 1 N N N 21.533 -25.224 -43.332 -2.141 -4.981 0.917 C18 M5U 19 M5U C19 C20 C 0 1 Y N N 22.821 -24.491 -43.698 -3.383 -4.204 0.974 C19 M5U 20 M5U C27 C21 C 0 1 N N S 28.430 -22.234 -43.457 -4.620 1.256 1.076 C27 M5U 21 M5U C29 C22 C 0 1 N N N 29.335 -23.964 -41.844 -3.668 3.510 0.644 C29 M5U 22 M5U C30 C23 C 0 1 N N N 28.493 -24.997 -41.542 -2.669 4.393 0.543 C30 M5U 23 M5U C31 C24 C 0 1 N N N 27.501 -25.691 -42.542 -1.328 3.988 0.952 C31 M5U 24 M5U C32 C25 C 0 1 N N N 26.754 -26.752 -42.150 -0.271 4.833 0.815 C32 M5U 25 M5U C33 C26 C 0 1 N N N 25.777 -27.398 -43.171 1.006 4.304 1.088 C33 M5U 26 M5U C34 C27 C 0 1 N N N 24.469 -27.328 -42.943 2.158 4.987 0.914 C34 M5U 27 M5U C35 C28 C 0 1 Y N N 23.473 -27.941 -43.949 3.401 4.211 0.961 C35 M5U 28 M5U C37 C29 C 0 1 Y N N 21.650 -28.938 -44.804 4.729 2.507 1.050 C37 M5U 29 M5U C38 C30 C 0 1 Y N N 22.517 -28.609 -45.759 5.496 3.625 0.968 C38 M5U 30 M5U C40 C31 C 0 1 N N N 20.294 -29.621 -45.001 5.179 1.098 1.098 C40 M5U 31 M5U C43 C32 C 0 1 N N S 28.824 -21.277 -44.599 -5.326 1.553 -0.248 C43 M5U 32 M5U C44 C33 C 0 1 N N S 30.106 -20.478 -44.299 -6.672 0.825 -0.283 C44 M5U 33 M5U C46 C34 C 0 1 N N N 30.059 -19.849 -42.871 -7.481 1.319 -1.454 C46 M5U 34 M5U C47 C35 C 0 1 N N N 30.997 -20.200 -41.975 -7.860 0.483 -2.388 C47 M5U 35 M5U C48 C36 C 0 1 N N N 31.000 -19.608 -40.536 -8.669 0.978 -3.560 C48 M5U 36 M5U C49 C37 C 0 1 N N N 27.675 -20.293 -44.843 -4.469 1.079 -1.393 C49 M5U 37 M5U C52 C38 C 0 1 N N N 26.476 -20.319 -46.885 -2.467 1.081 -2.686 C52 M5U 38 M5U N20 N1 N 0 1 Y N N 23.825 -24.056 -42.874 -3.414 -2.889 1.068 N20 M5U 39 M5U N36 N2 N 0 1 Y N N 22.233 -28.524 -43.711 3.436 2.897 1.061 N36 M5U 40 M5U O02 O1 O 0 1 N N N 18.083 -30.331 -50.039 3.218 -1.653 -1.489 O02 M5U 41 M5U O04 O2 O 0 1 N N N 19.700 -29.355 -48.818 4.837 -0.303 -2.151 O04 M5U 42 M5U O07 O3 O 0 1 N N N 18.609 -33.210 -47.508 7.421 -1.051 0.887 O07 M5U 43 M5U O23 O4 O 0 1 Y N N 23.238 -24.125 -44.978 -4.642 -4.670 0.950 O23 M5U 44 M5U O25 O5 O 0 1 N N N 26.144 -22.324 -41.934 -6.336 -0.800 1.138 O25 M5U 45 M5U O26 O6 O 0 1 N N N 27.255 -22.884 -43.862 -4.203 -0.131 1.104 O26 M5U 46 M5U O39 O7 O 0 1 Y N N 23.627 -28.013 -45.334 4.659 4.680 0.913 O39 M5U 47 M5U O41 O8 O 0 1 N N N 19.871 -30.390 -44.182 6.361 0.814 1.117 O41 M5U 48 M5U O42 O9 O 0 1 N N N 19.556 -29.290 -46.216 4.229 0.140 1.121 O42 M5U 49 M5U O45 O10 O 0 1 N N N 30.229 -19.483 -45.238 -7.383 1.080 0.929 O45 M5U 50 M5U O50 O11 O 0 1 N N N 26.931 -20.022 -43.972 -4.890 0.244 -2.158 O50 M5U 51 M5U O51 O12 O 0 1 N N N 27.505 -19.708 -46.125 -3.237 1.584 -1.563 O51 M5U 52 M5U H101 H1 H 0 0 N N N 23.853 -31.379 -47.541 9.514 -1.377 -3.307 H101 M5U 53 M5U H102 H2 H 0 0 N N N 23.199 -32.612 -48.673 7.990 -1.728 -4.158 H102 M5U 54 M5U H103 H3 H 0 0 N N N 22.940 -30.865 -49.000 8.751 -0.127 -4.319 H103 M5U 55 M5U H131 H5 H 0 0 N N N 15.702 -28.618 -45.104 4.683 -3.756 0.354 H131 M5U 56 M5U H151 H6 H 0 0 N N N 18.716 -26.168 -45.971 1.174 -2.992 1.407 H151 M5U 57 M5U H171 H7 H 0 0 N N N 20.803 -25.019 -45.259 -1.048 -3.340 1.637 H171 M5U 58 M5U H221 H8 H 0 0 N N N 24.990 -23.122 -45.599 -6.556 -3.649 0.995 H221 M5U 59 M5U H281 H9 H 0 0 N N N 29.400 -24.090 -44.015 -3.103 2.232 2.257 H281 M5U 60 M5U H282 H10 H 0 0 N N N 30.500 -22.858 -43.310 -2.551 1.692 0.654 H282 M5U 61 M5U H012 H11 H 0 0 N N N 16.341 -29.982 -51.062 2.931 -1.410 -3.540 H012 M5U 62 M5U H011 H12 H 0 0 N N N 16.182 -30.182 -49.284 1.450 -1.692 -2.595 H011 M5U 63 M5U H013 H13 H 0 0 N N N 16.882 -28.672 -49.959 2.265 -0.111 -2.521 H013 M5U 64 M5U H051 H14 H 0 0 N N N 17.316 -31.241 -47.703 5.515 -2.634 -0.292 H051 M5U 65 M5U H061 H15 H 0 0 N N N 19.519 -31.959 -46.141 6.479 0.255 -0.407 H061 M5U 66 M5U H081 H16 H 0 0 N N N 20.555 -32.152 -49.079 7.727 -2.345 -1.568 H081 M5U 67 M5U H091 H17 H 0 0 N N N 21.731 -31.472 -46.354 7.505 0.572 -2.376 H091 M5U 68 M5U H111 H18 H 0 0 N N N 17.956 -30.372 -45.476 5.351 -1.421 1.929 H111 M5U 69 M5U H121 H19 H 0 0 N N N 17.800 -27.901 -47.237 2.565 -1.680 0.789 H121 M5U 70 M5U H122 H20 H 0 0 N N N 16.485 -29.117 -47.376 3.205 -2.261 2.345 H122 M5U 71 M5U H141 H21 H 0 0 N N N 16.575 -26.908 -43.790 2.850 -5.329 0.101 H141 M5U 72 M5U H161 H23 H 0 0 N N N 19.062 -26.411 -42.934 0.422 -5.778 0.373 H161 M5U 73 M5U H181 H24 H 0 0 N N N 21.372 -25.591 -42.329 -2.159 -6.014 0.632 H181 M5U 74 M5U H271 H25 H 0 0 N N N 28.282 -21.664 -42.528 -5.297 1.451 1.907 H271 M5U 75 M5U H291 H27 H 0 0 N N N 29.935 -23.565 -41.039 -4.664 3.768 0.327 H291 M5U 76 M5U H301 H29 H 0 0 N N N 28.511 -25.368 -40.528 -2.848 5.381 0.155 H301 M5U 77 M5U H311 H30 H 0 0 N N N 27.413 -25.319 -43.552 -1.161 3.005 1.375 H311 M5U 78 M5U H321 H31 H 0 0 N N N 26.836 -27.141 -41.146 -0.415 5.838 0.474 H321 M5U 79 M5U H331 H32 H 0 0 N N N 26.154 -27.896 -44.052 1.065 3.284 1.469 H331 M5U 80 M5U H341 H33 H 0 0 N N N 24.103 -26.841 -42.051 2.176 6.035 0.692 H341 M5U 81 M5U H381 H34 H 0 0 N N N 22.332 -28.812 -46.804 6.575 3.662 0.951 H381 M5U 82 M5U H431 H35 H 0 0 N N N 28.984 -21.868 -45.513 -5.492 2.626 -0.339 H431 M5U 83 M5U H441 H36 H 0 0 N N N 30.964 -21.166 -44.344 -6.502 -0.247 -0.386 H441 M5U 84 M5U H461 H37 H 0 0 N N N 29.285 -19.143 -42.607 -7.747 2.364 -1.524 H461 M5U 85 M5U H471 H38 H 0 0 N N N 31.763 -20.906 -42.259 -7.593 -0.561 -2.319 H471 M5U 86 M5U H483 H39 H 0 0 N N N 31.846 -20.024 -39.969 -9.602 1.412 -3.199 H483 M5U 87 M5U H481 H40 H 0 0 N N N 31.098 -18.514 -40.590 -8.101 1.735 -4.100 H481 M5U 88 M5U H482 H41 H 0 0 N N N 30.058 -19.867 -40.031 -8.890 0.145 -4.227 H482 M5U 89 M5U H522 H42 H 0 0 N N N 26.397 -19.821 -47.863 -3.000 1.290 -3.614 H522 M5U 90 M5U H523 H43 H 0 0 N N N 26.713 -21.383 -47.034 -1.493 1.570 -2.708 H523 M5U 91 M5U H521 H44 H 0 0 N N N 25.520 -20.227 -46.348 -2.330 0.005 -2.581 H521 M5U 92 M5U H071 H45 H 0 0 N N N 17.798 -33.256 -47.015 7.625 -1.984 1.044 H071 M5U 93 M5U H451 H46 H 0 0 N N N 31.017 -18.980 -45.066 -7.569 2.016 1.086 H451 M5U 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M5U C01 O02 SING N N 1 M5U O02 C03 SING N N 2 M5U C03 O04 DOUB N N 3 M5U C03 C05 SING N N 4 M5U C10 C09 SING N N 5 M5U C08 C09 DOUB N E 6 M5U C08 C06 SING N N 7 M5U C05 C06 SING N N 8 M5U C05 C11 SING N N 9 M5U O07 C06 SING N N 10 M5U C52 O51 SING N N 11 M5U C12 C11 SING N N 12 M5U C12 C13 SING N N 13 M5U C11 O42 SING N N 14 M5U O42 C40 SING N N 15 M5U O51 C49 SING N N 16 M5U C38 O39 SING Y N 17 M5U C38 C37 DOUB Y N 18 M5U C13 C14 DOUB N Z 19 M5U O39 C35 SING Y N 20 M5U O45 C44 SING N N 21 M5U C40 C37 SING N N 22 M5U C40 O41 DOUB N N 23 M5U O23 C22 SING Y N 24 M5U O23 C19 SING Y N 25 M5U C15 C14 SING N N 26 M5U C15 C16 DOUB N E 27 M5U C49 C43 SING N N 28 M5U C49 O50 DOUB N N 29 M5U C37 N36 SING Y N 30 M5U C22 C21 DOUB Y N 31 M5U C43 C44 SING N N 32 M5U C43 C27 SING N N 33 M5U C44 C46 SING N N 34 M5U C17 C16 SING N N 35 M5U C17 C18 DOUB N E 36 M5U C35 N36 DOUB Y N 37 M5U C35 C34 SING N N 38 M5U O26 C27 SING N N 39 M5U O26 C24 SING N N 40 M5U C19 C18 SING N N 41 M5U C19 N20 DOUB Y N 42 M5U C21 C24 SING N N 43 M5U C21 N20 SING Y N 44 M5U C27 C28 SING N N 45 M5U C28 C29 SING N N 46 M5U C33 C34 DOUB N E 47 M5U C33 C32 SING N N 48 M5U C24 O25 DOUB N N 49 M5U C46 C47 DOUB N E 50 M5U C31 C32 DOUB N E 51 M5U C31 C30 SING N N 52 M5U C47 C48 SING N N 53 M5U C29 C30 DOUB N Z 54 M5U C10 H101 SING N N 55 M5U C10 H102 SING N N 56 M5U C10 H103 SING N N 57 M5U C13 H131 SING N N 58 M5U C15 H151 SING N N 59 M5U C17 H171 SING N N 60 M5U C22 H221 SING N N 61 M5U C28 H281 SING N N 62 M5U C28 H282 SING N N 63 M5U C01 H012 SING N N 64 M5U C01 H011 SING N N 65 M5U C01 H013 SING N N 66 M5U C05 H051 SING N N 67 M5U C06 H061 SING N N 68 M5U C08 H081 SING N N 69 M5U C09 H091 SING N N 70 M5U C11 H111 SING N N 71 M5U C12 H121 SING N N 72 M5U C12 H122 SING N N 73 M5U C14 H141 SING N N 74 M5U C16 H161 SING N N 75 M5U C18 H181 SING N N 76 M5U C27 H271 SING N N 77 M5U C29 H291 SING N N 78 M5U C30 H301 SING N N 79 M5U C31 H311 SING N N 80 M5U C32 H321 SING N N 81 M5U C33 H331 SING N N 82 M5U C34 H341 SING N N 83 M5U C38 H381 SING N N 84 M5U C43 H431 SING N N 85 M5U C44 H441 SING N N 86 M5U C46 H461 SING N N 87 M5U C47 H471 SING N N 88 M5U C48 H483 SING N N 89 M5U C48 H481 SING N N 90 M5U C48 H482 SING N N 91 M5U C52 H522 SING N N 92 M5U C52 H523 SING N N 93 M5U C52 H521 SING N N 94 M5U O07 H071 SING N N 95 M5U O45 H451 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M5U InChI InChI 1.06 "InChI=1S/C38H42N2O12/c1-5-17-27(41)33(37(45)47-3)29-19-13-9-7-11-15-22-32-40-26(24-50-32)36(44)52-30(34(38(46)48-4)28(42)18-6-2)20-14-10-8-12-16-21-31-39-25(23-49-31)35(43)51-29/h5-18,21-24,27-30,33-34,41-42H,19-20H2,1-4H3/b11-7+,12-8+,13-9-,14-10-,17-5+,18-6+,21-16+,22-15+/t27-,28-,29-,30-,33-,34-/m0/s1" M5U InChIKey InChI 1.06 ILLJCNVLLYJJLU-RNYWGXLASA-N M5U SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@@H]([C@@H](O)\C=C\C)[C@@H]1C\C=C/C=C/C=C/c2occ(n2)C(=O)O[C@@H](C\C=C/C=C/C=C/c3occ(n3)C(=O)O1)[C@H]([C@@H](O)\C=C\C)C(=O)OC" M5U SMILES CACTVS 3.385 "COC(=O)[CH]([CH](O)C=CC)[CH]1CC=CC=CC=Cc2occ(n2)C(=O)O[CH](CC=CC=CC=Cc3occ(n3)C(=O)O1)[CH]([CH](O)C=CC)C(=O)OC" M5U SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C/C=C/[C@H](O)[C@H](C(=O)OC)[C@H]1OC(=O)c2nc(oc2)/C=C/C=C/C=C\C[C@H](OC(=O)c3nc(oc3)/C=C/C=C/C=C\C1)[C@@H](C(=O)OC)[C@@H](O)/C=C/C" M5U SMILES "OpenEye OEToolkits" 3.1.0.0 "CC=CC(C(C1CC=CC=CC=Cc2nc(co2)C(=O)OC(CC=CC=CC=Cc3nc(co3)C(=O)O1)C(C(C=CC)O)C(=O)OC)C(=O)OC)O" # _pdbx_chem_comp_identifier.comp_id M5U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "methyl (~{E},2~{S},3~{S})-2-[(4~{S},6~{Z},8~{E},10~{E},18~{S},20~{Z},22~{E},24~{E})-18-[(~{E},2~{S},3~{S})-1-methoxy-3-oxidanyl-1-oxidanylidene-hex-4-en-2-yl]-2,16-bis(oxidanylidene)-3,13,17,27-tetraoxa-29,30-diazatricyclo[24.2.1.1^{12,15}]triaconta-1(28),6,8,10,12(30),14,20,22,24,26(29)-decaen-4-yl]-3-oxidanyl-hex-4-enoate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id M5U _pdbx_chem_comp_synonyms.name "methyl (E,2S,3S)-2-[(4S,6Z,8E,10E,18S,20Z,22E,24E)-18-[(E,2S,3S)-1-methoxy-3-oxidanyl-1-oxidanylidene-hex-4-en-2-yl]-2,16-bis(oxidanylidene)-3,13,17,27-tetraoxa-29,30-diazatricyclo[24.2.1.1^{12,15}]triaconta-1(28),6,8,10,12(30),14,20,22,24,26(29)-decaen-4-yl]-3-oxidanyl-hex-4-enoate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M5U "Create component" 2022-07-22 PDBE M5U "Initial release" 2022-11-16 RCSB #