data_M60 # _chem_comp.id M60 _chem_comp.name "(4S)-5-[[(2S)-1-[2-(carboxymethyl)-2-[(3S)-3-hydroxy-4-oxo-4-(phenethylamino)butanoyl]hydrazinyl]-3-methyl-1-oxo-butan-2-yl]amino]-5-oxo-4-(phenylmethoxycarbonylamino)pentanoic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H41 N5 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Cbz-GLU-VAL-azaASP-(S,S)EP-CO-NHCH2CH2Ph" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-11-08 _chem_comp.pdbx_modified_date 2023-09-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 671.695 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M60 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2CNO _chem_comp.pdbx_subcomponent_list "PHQ GLU VAL MY0 PEA" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M60 C11 C11 C 0 1 N N N 42.005 30.760 23.986 4.798 1.204 -0.378 C1 PHQ 1 M60 O11 O11 O 0 1 N N N 42.540 31.610 23.284 4.925 1.782 -1.440 O1 PHQ 2 M60 O21 O21 O 0 1 N N N 42.412 29.461 24.166 5.878 0.701 0.248 O2 PHQ 3 M60 C21 C21 C 0 1 N N N 43.598 29.017 23.445 7.163 0.885 -0.402 C2 PHQ 4 M60 C31 C31 C 0 1 Y N N 43.977 27.546 23.727 8.245 0.260 0.439 C3 PHQ 5 M60 C81 C81 C 0 1 Y N N 45.139 27.009 23.051 8.892 1.011 1.402 C4 PHQ 6 M60 C71 C71 C 0 1 Y N N 45.556 25.639 23.267 9.882 0.436 2.178 C5 PHQ 7 M60 C61 C61 C 0 1 Y N N 44.809 24.792 24.169 10.232 -0.887 1.982 C6 PHQ 8 M60 C51 C51 C 0 1 Y N N 43.643 25.316 24.852 9.590 -1.636 1.015 C7 PHQ 9 M60 C41 C41 C 0 1 Y N N 43.226 26.685 24.635 8.596 -1.063 0.243 C8 PHQ 10 M60 N1 N1 N 0 1 N N N 41.006 30.422 24.787 3.575 1.068 0.172 N GLU 11 M60 CA2 CA2 C 0 1 N N S 39.945 31.344 25.175 2.400 1.617 -0.510 CA GLU 12 M60 C20 C20 C 0 1 N N N 39.568 31.125 26.635 1.315 1.889 0.500 C GLU 13 M60 O2 O2 O 0 1 N N N 39.442 29.989 27.092 1.505 1.649 1.673 O GLU 14 M60 CB2 CB2 C 0 1 N N N 38.710 31.156 24.282 1.893 0.608 -1.543 CB GLU 15 M60 CG2 CG2 C 0 1 N N N 38.868 31.719 22.872 2.947 0.426 -2.637 CG GLU 16 M60 CD2 CD2 C 0 1 N N N 37.632 31.525 22.008 2.448 -0.567 -3.655 CD GLU 17 M60 OZ1 OZ1 O 0 1 N N N 37.761 30.916 20.926 1.360 -1.077 -3.519 OE1 GLU 18 M60 OZ2 OZ2 O 0 1 N N N 36.536 31.982 22.404 3.211 -0.886 -4.712 OE2 GLU 19 M60 N3 N3 N 0 1 N N N 39.395 32.221 27.364 0.134 2.400 0.099 N VAL 20 M60 CA3 CA3 C 0 1 N N S 39.036 32.143 28.771 -0.921 2.665 1.081 CA VAL 21 M60 C30 C30 C 0 1 N N N 37.581 32.526 29.007 -2.264 2.629 0.397 C VAL 22 M60 O3 O3 O 0 1 N N N 36.977 33.262 28.223 -2.331 2.691 -0.812 O VAL 23 M60 CB3 CB3 C 0 1 N N N 39.936 33.056 29.633 -0.702 4.045 1.704 CB VAL 24 M60 CZ1 CZ1 C 0 1 N N N 41.369 32.556 29.591 -1.731 4.273 2.813 CG1 VAL 25 M60 CZ2 CZ2 C 0 1 N N N 39.858 34.491 29.133 0.708 4.122 2.292 CG2 VAL 26 M60 N4 N4 N 0 1 N N N 36.919 32.096 30.044 -3.390 2.527 1.130 N MY0 27 M60 N5 N5 N 0 1 N N N 35.721 32.078 30.764 -4.642 2.612 0.507 N5 MY0 28 M60 O5 O5 O 0 1 N N N 37.541 37.067 32.064 -5.811 -2.938 1.685 O MY0 29 M60 O6 O6 O 0 1 N N N 34.211 33.145 32.130 -6.462 1.572 -0.220 O4 MY0 30 M60 O7 O7 O 0 1 N N N 33.845 29.435 29.123 -5.181 5.231 -2.029 O7 MY0 31 M60 O8 O8 O 0 1 N N N 33.901 31.614 28.638 -4.209 3.247 -1.999 O8 MY0 32 M60 O9 O9 O 0 1 N N N 34.650 36.295 31.438 -7.071 -0.704 1.210 O2 MY0 33 M60 C3 C3 C 0 1 N N N 36.161 34.433 31.487 -4.856 0.163 0.783 C3 MY0 34 M60 C12 C12 C 0 1 N N N 34.983 30.812 30.698 -5.149 3.911 0.057 C5 MY0 35 M60 C1 C1 C 0 1 N N N 36.650 36.602 32.775 -5.306 -2.275 0.804 C MY0 36 M60 C16 C16 C 0 1 N N N 35.270 33.185 31.495 -5.379 1.499 0.320 C4 MY0 37 M60 C17 C17 C 0 1 N N N 34.206 30.702 29.401 -4.812 4.105 -1.399 C6 MY0 38 M60 C2 C2 C 0 1 N N S 35.576 35.605 32.286 -5.879 -0.926 0.454 C2 MY0 39 M60 C44 C44 C 0 1 Y N N 37.497 39.544 36.714 -1.897 -5.696 -0.067 "C1'" PEA 40 M60 C34 C34 C 0 1 Y N N 38.002 39.165 37.996 -2.357 -6.831 -0.710 "C6'" PEA 41 M60 C23 C23 C 0 1 Y N N 38.852 40.037 38.730 -1.832 -8.068 -0.388 "C5'" PEA 42 M60 C13 C13 C 0 1 Y N N 39.207 41.298 38.192 -0.846 -8.171 0.576 "C4'" PEA 43 M60 C64 C64 C 0 1 Y N N 38.712 41.691 36.921 -0.390 -7.038 1.222 "C3'" PEA 44 M60 C54 C54 C 0 1 Y N N 37.857 40.819 36.180 -0.911 -5.799 0.896 "C2'" PEA 45 M60 C77 C77 C 0 1 N N N 36.597 38.604 35.941 -2.470 -4.347 -0.418 C2 PEA 46 M60 C14 C14 C 0 1 N N N 37.355 37.824 34.854 -3.675 -4.056 0.480 C1 PEA 47 M60 N6 N6 N 0 1 N N N 36.487 36.913 34.126 -4.232 -2.744 0.139 N PEA 48 M60 H21 H21 H 0 1 N N N 44.442 29.653 23.750 7.145 0.409 -1.383 H21 PHQ 49 M60 H21A H21A H 0 0 N N N 43.402 29.120 22.367 7.362 1.950 -0.518 H22 PHQ 50 M60 H81 H81 H 0 1 N N N 45.702 27.638 22.377 8.621 2.046 1.552 H41 PHQ 51 M60 H71 H71 H 0 1 N N N 46.424 25.251 22.755 10.384 1.022 2.934 H51 PHQ 52 M60 H61 H61 H 0 1 N N N 45.119 23.771 24.334 11.008 -1.334 2.586 H61 PHQ 53 M60 H51 H51 H 0 1 N N N 43.084 24.683 25.525 9.863 -2.670 0.862 H71 PHQ 54 M60 H41 H41 H 0 1 N N N 42.356 27.070 25.147 8.094 -1.649 -0.512 H81 PHQ 55 M60 HN1 HN1 H 0 1 N N N 40.978 29.488 25.143 3.472 0.604 1.017 H GLU 56 M60 HA2 HA2 H 0 1 N N N 40.316 32.372 25.048 2.671 2.545 -1.012 HA GLU 57 M60 HB2 HB2 H 0 1 N N N 38.515 30.077 24.196 1.706 -0.349 -1.056 HB2 GLU 58 M60 HB2A HB2A H 0 0 N N N 37.864 31.672 24.760 0.968 0.977 -1.987 HB3 GLU 59 M60 HG2 HG2 H 0 1 N N N 39.066 32.798 22.952 3.134 1.382 -3.125 HG2 GLU 60 M60 HG2A HG2A H 0 0 N N N 39.711 31.204 22.388 3.871 0.057 -2.193 HG3 GLU 61 M60 HOZ2 HOZ2 H 0 0 N N N 35.862 31.789 21.763 2.848 -1.528 -5.338 HE2 GLU 62 M60 HN3 HN3 H 0 1 N N N 39.514 33.118 26.937 -0.018 2.592 -0.840 H VAL 63 M60 HA3 HA3 H 0 1 N N N 39.183 31.094 29.069 -0.890 1.905 1.861 HA VAL 64 M60 HB3 HB3 H 0 1 N N N 39.583 33.030 30.674 -0.819 4.812 0.938 HB VAL 65 M60 HZ1 HZ1 H 0 1 N N N 42.004 33.210 30.206 -1.677 3.455 3.532 HG11 VAL 66 M60 HZ1A HZ1A H 0 0 N N N 41.411 31.529 29.984 -1.518 5.215 3.318 HG12 VAL 67 M60 HZ1B HZ1B H 0 0 N N N 41.730 32.566 28.552 -2.730 4.310 2.380 HG13 VAL 68 M60 HZ2 HZ2 H 0 1 N N N 40.502 35.132 29.753 1.441 3.960 1.501 HG21 VAL 69 M60 HZ2A HZ2A H 0 0 N N N 40.197 34.534 28.087 0.863 5.105 2.736 HG22 VAL 70 M60 HZ2B HZ2B H 0 0 N N N 38.819 34.845 29.197 0.824 3.355 3.058 HG23 VAL 71 M60 HN4 HN4 H 0 1 N N N 37.555 31.518 30.555 -3.334 2.396 2.090 H MY0 72 M60 HO7 HO7 H 0 1 N N N 33.362 29.415 28.305 -4.942 5.311 -2.963 HO7 MY0 73 M60 HO9 HO9 H 0 1 N N N 34.272 37.028 31.911 -6.938 -0.718 2.167 HO2 MY0 74 M60 H10 H10 H 0 1 N N N 37.131 34.165 31.931 -3.917 -0.055 0.276 H3 MY0 75 M60 H10A H10A H 0 0 N N N 36.287 34.758 30.444 -4.689 0.192 1.860 H3A MY0 76 M60 H12 H12 H 0 1 N N N 35.698 29.978 30.758 -6.231 3.942 0.186 H5 MY0 77 M60 H12A H12A H 0 0 N N N 34.279 30.765 31.542 -4.690 4.704 0.646 H5A MY0 78 M60 H94 H94 H 0 1 N N N 35.091 35.195 33.184 -6.112 -0.896 -0.610 H20 MY0 79 M60 H34 H34 H 0 1 N N N 37.735 38.205 38.412 -3.127 -6.750 -1.463 "H6'" PEA 80 M60 H23 H23 H 0 1 N N N 39.227 39.738 39.698 -2.192 -8.954 -0.890 "H5'" PEA 81 M60 H13 H13 H 0 1 N N N 39.854 41.960 38.748 -0.436 -9.138 0.826 "H4'" PEA 82 M60 H64 H64 H 0 1 N N N 38.983 42.653 36.512 0.380 -7.118 1.974 "H3'" PEA 83 M60 H54 H54 H 0 1 N N N 37.482 41.124 35.214 -0.552 -4.913 1.398 "H2'" PEA 84 M60 H77 H77 H 0 1 N N N 35.807 39.197 35.457 -2.786 -4.346 -1.461 H21 PEA 85 M60 H77A H77A H 0 0 N N N 36.159 37.882 36.646 -1.711 -3.580 -0.267 H22 PEA 86 M60 H14 H14 H 0 1 N N N 38.153 37.239 35.335 -3.359 -4.057 1.523 H11 PEA 87 M60 H14A H14A H 0 0 N N N 37.784 38.544 34.141 -4.434 -4.823 0.329 H12 PEA 88 M60 HN6 HN6 H 0 1 N N N 35.731 36.485 34.621 -3.828 -2.214 -0.565 HN1 PEA 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M60 C11 N1 SING N N 1 M60 N1 CA2 SING N N 2 M60 N1 HN1 SING N N 3 M60 CA2 C20 SING N N 4 M60 C20 O2 DOUB N N 5 M60 C20 N3 SING N N 6 M60 O3 C30 DOUB N N 7 M60 CA3 C30 SING N N 8 M60 C30 N4 SING N N 9 M60 N3 CA3 SING N N 10 M60 N3 HN3 SING N N 11 M60 N4 N5 SING N N 12 M60 N4 HN4 SING N N 13 M60 C12 N5 SING N N 14 M60 N5 C16 SING N N 15 M60 O5 C1 DOUB N N 16 M60 C1 N6 SING N N 17 M60 N6 C14 SING N N 18 M60 N6 HN6 SING N N 19 M60 C16 O6 DOUB N N 20 M60 O7 C17 SING N N 21 M60 O7 HO7 SING N N 22 M60 O8 C17 DOUB N N 23 M60 O9 C2 SING N N 24 M60 O9 HO9 SING N N 25 M60 C3 C16 SING N N 26 M60 C3 C2 SING N N 27 M60 C3 H10 SING N N 28 M60 C3 H10A SING N N 29 M60 O11 C11 DOUB N N 30 M60 C11 O21 SING N N 31 M60 C17 C12 SING N N 32 M60 C12 H12 SING N N 33 M60 C12 H12A SING N N 34 M60 C64 C13 DOUB Y N 35 M60 C13 C23 SING Y N 36 M60 C13 H13 SING N N 37 M60 C14 C77 SING N N 38 M60 C14 H14 SING N N 39 M60 C14 H14A SING N N 40 M60 C2 C1 SING N N 41 M60 C21 C31 SING N N 42 M60 C21 O21 SING N N 43 M60 C21 H21 SING N N 44 M60 C21 H21A SING N N 45 M60 C34 C23 DOUB Y N 46 M60 C23 H23 SING N N 47 M60 C81 C31 DOUB Y N 48 M60 C31 C41 SING Y N 49 M60 C44 C34 SING Y N 50 M60 C34 H34 SING N N 51 M60 C41 C51 DOUB Y N 52 M60 C41 H41 SING N N 53 M60 C77 C44 SING N N 54 M60 C54 C44 DOUB Y N 55 M60 C61 C51 SING Y N 56 M60 C51 H51 SING N N 57 M60 C54 C64 SING Y N 58 M60 C54 H54 SING N N 59 M60 C71 C61 DOUB Y N 60 M60 C61 H61 SING N N 61 M60 C64 H64 SING N N 62 M60 C81 C71 SING Y N 63 M60 C71 H71 SING N N 64 M60 C77 H77 SING N N 65 M60 C77 H77A SING N N 66 M60 C81 H81 SING N N 67 M60 C2 H94 SING N N 68 M60 CB2 CA2 SING N N 69 M60 CA2 HA2 SING N N 70 M60 CA3 CB3 SING N N 71 M60 CA3 HA3 SING N N 72 M60 CG2 CB2 SING N N 73 M60 CB2 HB2 SING N N 74 M60 CB2 HB2A SING N N 75 M60 CZ2 CB3 SING N N 76 M60 CZ1 CB3 SING N N 77 M60 CB3 HB3 SING N N 78 M60 OZ1 CD2 DOUB N N 79 M60 CD2 OZ2 SING N N 80 M60 CD2 CG2 SING N N 81 M60 CG2 HG2 SING N N 82 M60 CG2 HG2A SING N N 83 M60 CZ1 HZ1 SING N N 84 M60 CZ1 HZ1A SING N N 85 M60 CZ1 HZ1B SING N N 86 M60 CZ2 HZ2 SING N N 87 M60 CZ2 HZ2A SING N N 88 M60 CZ2 HZ2B SING N N 89 M60 OZ2 HOZ2 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M60 SMILES ACDLabs 12.01 "O=C(NCCc1ccccc1)C(O)CC(=O)N(NC(=O)C(NC(=O)C(NC(=O)OCc2ccccc2)CCC(=O)O)C(C)C)CC(=O)O" M60 SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@H](NC(=O)[C@H](CCC(O)=O)NC(=O)OCc1ccccc1)C(=O)NN(CC(O)=O)C(=O)C[C@H](O)C(=O)NCCc2ccccc2" M60 SMILES CACTVS 3.370 "CC(C)[CH](NC(=O)[CH](CCC(O)=O)NC(=O)OCc1ccccc1)C(=O)NN(CC(O)=O)C(=O)C[CH](O)C(=O)NCCc2ccccc2" M60 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)[C@@H](C(=O)NN(CC(=O)O)C(=O)C[C@@H](C(=O)NCCc1ccccc1)O)NC(=O)[C@H](CCC(=O)O)NC(=O)OCc2ccccc2" M60 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)C(C(=O)NN(CC(=O)O)C(=O)CC(C(=O)NCCc1ccccc1)O)NC(=O)C(CCC(=O)O)NC(=O)OCc2ccccc2" M60 InChI InChI 1.03 "InChI=1S/C32H41N5O11/c1-20(2)28(35-29(44)23(13-14-26(40)41)34-32(47)48-19-22-11-7-4-8-12-22)31(46)36-37(18-27(42)43)25(39)17-24(38)30(45)33-16-15-21-9-5-3-6-10-21/h3-12,20,23-24,28,38H,13-19H2,1-2H3,(H,33,45)(H,34,47)(H,35,44)(H,36,46)(H,40,41)(H,42,43)/t23-,24-,28-/m0/s1" M60 InChIKey InChI 1.03 WAYWBQVKFMZBCU-QONNDPFASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier M60 "SYSTEMATIC NAME" ACDLabs 12.01 "(5S,8S)-5-(2-carboxyethyl)-11-{(3S)-3-hydroxy-4-oxo-4-[(2-phenylethyl)amino]butanoyl}-3,6,9-trioxo-1-phenyl-8-(propan-2-yl)-2-oxa-4,7,10,11-tetraazatridecan-13-oic acid (non-preferred name)" M60 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(4S)-5-[[(2S)-1-[2-(carboxymethyl)-2-[(3S)-3-hydroxy-4-oxo-4-(phenethylamino)butanoyl]hydrazinyl]-3-methyl-1-oxo-butan-2-yl]amino]-5-oxo-4-(phenylmethoxycarbonylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M60 "Create component" 2010-11-08 RCSB M60 "Modify aromatic_flag" 2011-06-04 RCSB M60 "Modify descriptor" 2011-06-04 RCSB M60 "Modify synonyms" 2021-03-13 RCSB M60 "Obsolete component" 2023-08-15 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id M60 _pdbx_chem_comp_synonyms.name "Cbz-GLU-VAL-azaASP-(S,S)EP-CO-NHCH2CH2Ph" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #