data_M6L # _chem_comp.id M6L _chem_comp.name "(phenylmethyl) ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S},3~{S})-2-oxidanyl-1-oxidanylidene-1-(pyridin-2-ylmethylamino)hexan-3-yl]amino]pentan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H36 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.588 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M6L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AHV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M6L N1 N1 N 0 1 N N N N N N 12.345 -17.107 -0.307 -5.087 0.199 -0.107 N1 M6L 1 M6L N3 N2 N 0 1 N N N N N N 14.115 -21.341 -0.179 -0.996 1.672 0.218 N3 M6L 2 M6L C4 C1 C 0 1 N N S N N N 13.302 -20.333 -0.894 -2.300 1.160 0.646 C4 M6L 3 M6L C5 C2 C 0 1 N N S N N N 13.950 -18.915 -0.859 -3.411 2.013 0.031 C5 M6L 4 M6L C6 C3 C 0 1 N N N N N N 12.818 -17.983 -1.204 -4.751 1.413 0.371 C6 M6L 5 M6L C7 C4 C 0 1 N N N N N N 11.315 -16.100 -0.536 -6.392 -0.381 0.219 C7 M6L 6 M6L C8 C5 C 0 1 Y N N N N N 9.970 -16.799 -0.692 -6.521 -1.730 -0.440 C8 M6L 7 M6L C10 C6 C 0 1 Y N N N N N 8.508 -18.625 -0.215 -6.325 -4.108 -0.343 C10 M6L 8 M6L C13 C7 C 0 1 N N N N N N 14.689 -22.361 -0.777 0.074 0.853 0.189 C13 M6L 9 M6L C15 C8 C 0 1 N N N N N N 17.217 -22.549 -0.421 1.311 1.903 -1.687 C15 M6L 10 M6L C17 C9 C 0 1 N N N N N N 18.273 -23.225 1.758 2.575 2.962 -3.564 C17 M6L 11 M6L C20 C10 C 0 1 N N N N N N 13.355 -27.267 -0.402 6.013 -0.004 0.166 C20 M6L 12 M6L C21 C11 C 0 1 Y N N N N N 13.739 -28.583 -1.051 6.879 -1.236 0.203 C21 M6L 13 M6L C22 C12 C 0 1 Y N N N N N 13.379 -29.775 -0.429 7.401 -1.749 -0.970 C22 M6L 14 M6L C24 C13 C 0 1 Y N N N N N 14.481 -31.015 -2.196 8.469 -3.497 0.269 C24 M6L 15 M6L C26 C14 C 0 1 Y N N N N N 14.471 -28.612 -2.234 7.157 -1.850 1.409 C26 M6L 16 M6L C1 C15 C 0 1 N N N N N N 10.174 -22.248 -0.448 -1.460 0.333 4.312 C1 M6L 17 M6L C11 C16 C 0 1 Y N N N N N 7.575 -18.062 -1.057 -6.764 -4.151 -1.657 C11 M6L 18 M6L C12 C17 C 0 1 Y N N N N N 7.857 -16.882 -1.720 -7.069 -2.968 -2.304 C12 M6L 19 M6L C14 C18 C 0 1 N N S N N N 15.798 -23.046 -0.041 1.415 1.380 -0.253 C14 M6L 20 M6L C16 C19 C 0 1 N N N N N N 18.290 -23.403 0.237 2.636 2.551 -2.091 C16 M6L 21 M6L C18 C20 C 0 1 N N N N N N 19.656 -23.067 -0.309 2.884 3.789 -1.226 C18 M6L 22 M6L C19 C21 C 0 1 N N N N N N 14.659 -25.177 0.084 3.713 0.597 -0.047 C19 M6L 23 M6L C2 C22 C 0 1 N N N N N N 11.578 -21.950 0.068 -1.365 0.272 2.787 C2 M6L 24 M6L C23 C23 C 0 1 Y N N N N N 13.747 -30.991 -1.003 8.196 -2.880 -0.937 C23 M6L 25 M6L C25 C24 C 0 1 Y N N N N N 14.850 -29.816 -2.812 7.957 -2.977 1.443 C25 M6L 26 M6L C3 C25 C 0 1 N N N N N N 11.965 -20.480 -0.189 -2.395 1.221 2.172 C3 M6L 27 M6L C9 C26 C 0 1 Y N N N N N 9.713 -17.994 -0.029 -6.203 -2.871 0.273 C9 M6L 28 M6L N2 N3 N 0 1 Y N N N N N 9.047 -16.279 -1.527 -6.941 -1.809 -1.687 N2 M6L 29 M6L N4 N4 N 0 1 N N N N N N 15.693 -24.455 -0.360 2.406 0.303 -0.197 N4 M6L 30 M6L O1 O1 O 0 1 N N N N N N 14.205 -18.735 0.536 -3.336 3.341 0.553 O1 M6L 31 M6L O2 O2 O 0 1 N N N N N N 12.391 -18.008 -2.332 -5.527 2.024 1.076 O2 M6L 32 M6L O3 O3 O 0 1 N N N N N N 14.368 -22.710 -1.899 -0.043 -0.308 0.517 O3 M6L 33 M6L O4 O4 O 0 1 N N N N N N 13.818 -24.729 0.837 4.069 1.755 0.041 O4 M6L 34 M6L O5 O5 O 0 1 N N N N N N 14.600 -26.550 -0.374 4.624 -0.394 0.004 O5 M6L 35 M6L H9 H1 H 0 1 N N N N N N 12.738 -17.148 0.612 -4.466 -0.289 -0.670 H9 M6L 36 M6L H16 H2 H 0 1 N N N N N N 14.234 -21.241 0.809 -0.903 2.601 -0.045 H16 M6L 37 M6L H8 H3 H 0 1 N N N N N N 13.186 -20.636 -1.945 -2.410 0.126 0.317 H8 M6L 38 M6L H35 H4 H 0 1 N N N N N N 14.826 -18.821 -1.517 -3.290 2.041 -1.052 H35 M6L 39 M6L H11 H5 H 0 1 N N N N N N 11.547 -15.536 -1.451 -6.480 -0.494 1.299 H11 M6L 40 M6L H10 H6 H 0 1 N N N N N N 11.276 -15.410 0.320 -7.183 0.277 -0.143 H10 M6L 41 M6L H13 H7 H 0 1 N N N N N N 8.294 -19.553 0.294 -6.083 -5.016 0.189 H13 M6L 42 M6L H19 H8 H 0 1 N N N N N N 17.336 -22.601 -1.513 1.091 1.075 -2.360 H19 M6L 43 M6L H18 H9 H 0 1 N N N N N N 17.334 -21.507 -0.089 0.512 2.642 -1.747 H18 M6L 44 M6L H23 H10 H 0 1 N N N N N N 19.056 -23.851 2.210 1.763 3.675 -3.709 H23 M6L 45 M6L H22 H11 H 0 1 N N N N N N 18.460 -22.170 2.006 3.519 3.424 -3.852 H22 M6L 46 M6L H21 H12 H 0 1 N N N N N N 17.291 -23.526 2.151 2.398 2.080 -4.180 H21 M6L 47 M6L H29 H13 H 0 1 N N N N N N 12.604 -26.733 -1.003 6.129 0.550 1.098 H29 M6L 48 M6L H28 H14 H 0 1 N N N N N N 12.966 -27.425 0.615 6.313 0.627 -0.670 H28 M6L 49 M6L H30 H15 H 0 1 N N N N N N 12.818 -29.758 0.493 7.188 -1.267 -1.913 H30 M6L 50 M6L H32 H16 H 0 1 N N N N N N 14.761 -31.959 -2.639 9.090 -4.380 0.295 H32 M6L 51 M6L H34 H17 H 0 1 N N N N N N 14.749 -27.683 -2.710 6.750 -1.449 2.326 H34 M6L 52 M6L H2 H18 H 0 1 N N N N N N 9.926 -23.302 -0.251 -1.261 1.351 4.648 H2 M6L 53 M6L H1 H19 H 0 1 N N N N N N 9.449 -21.599 0.065 -2.460 0.036 4.626 H1 M6L 54 M6L H3 H20 H 0 1 N N N N N N 10.133 -22.058 -1.531 -0.726 -0.343 4.750 H3 M6L 55 M6L H14 H21 H 0 1 N N N N N N 6.619 -18.544 -1.200 -6.871 -5.096 -2.167 H14 M6L 56 M6L H15 H22 H 0 1 N N N N N N 7.129 -16.446 -2.388 -7.416 -2.993 -3.326 H15 M6L 57 M6L H17 H23 H 0 1 N N N N N N 15.657 -22.898 1.040 1.722 2.191 0.408 H17 M6L 58 M6L H20 H24 H 0 1 N N N N N N 18.076 -24.459 0.013 3.448 1.839 -1.946 H20 M6L 59 M6L H25 H25 H 0 1 N N N N N N 20.413 -23.697 0.182 2.928 3.496 -0.177 H25 M6L 60 M6L H26 H26 H 0 1 N N N N N N 19.673 -23.251 -1.393 3.828 4.250 -1.514 H26 M6L 61 M6L H24 H27 H 0 1 N N N N N N 19.878 -22.008 -0.114 2.072 4.502 -1.371 H24 M6L 62 M6L H5 H28 H 0 1 N N N N N N 11.612 -22.146 1.150 -0.364 0.569 2.473 H5 M6L 63 M6L H4 H29 H 0 1 N N N N N N 12.296 -22.605 -0.446 -1.563 -0.746 2.451 H4 M6L 64 M6L H31 H30 H 0 1 N N N N N N 13.465 -31.918 -0.526 8.595 -3.286 -1.854 H31 M6L 65 M6L H33 H31 H 0 1 N N N N N N 15.423 -29.826 -3.727 8.175 -3.457 2.386 H33 M6L 66 M6L H7 H32 H 0 1 N N N N N N 12.019 -19.958 0.778 -2.197 2.239 2.508 H7 M6L 67 M6L H6 H33 H 0 1 N N N N N N 11.187 -20.017 -0.813 -3.396 0.924 2.486 H6 M6L 68 M6L H12 H34 H 0 1 N N N N N N 10.456 -18.423 0.627 -5.863 -2.800 1.295 H12 M6L 69 M6L H27 H35 H 0 1 N N N N N N 16.400 -24.891 -0.917 2.122 -0.622 -0.267 H27 M6L 70 M6L H36 H36 H 0 1 N N N N N N 14.916 -19.305 0.805 -3.436 3.392 1.514 H36 M6L 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M6L C25 C26 DOUB Y N 1 M6L C25 C24 SING Y N 2 M6L O2 C6 DOUB N N 3 M6L C26 C21 SING Y N 4 M6L C24 C23 DOUB Y N 5 M6L O3 C13 DOUB N N 6 M6L C12 N2 DOUB Y N 7 M6L C12 C11 SING Y N 8 M6L N2 C8 SING Y N 9 M6L C6 C5 SING N N 10 M6L C6 N1 SING N N 11 M6L C11 C10 DOUB Y N 12 M6L C21 C22 DOUB Y N 13 M6L C21 C20 SING N N 14 M6L C23 C22 SING Y N 15 M6L C4 C5 SING N N 16 M6L C4 C3 SING N N 17 M6L C4 N3 SING N N 18 M6L C5 O1 SING N N 19 M6L C13 N3 SING N N 20 M6L C13 C14 SING N N 21 M6L C8 C7 SING N N 22 M6L C8 C9 DOUB Y N 23 M6L C7 N1 SING N N 24 M6L C1 C2 SING N N 25 M6L C15 C14 SING N N 26 M6L C15 C16 SING N N 27 M6L C20 O5 SING N N 28 M6L O5 C19 SING N N 29 M6L N4 C14 SING N N 30 M6L N4 C19 SING N N 31 M6L C18 C16 SING N N 32 M6L C10 C9 SING Y N 33 M6L C3 C2 SING N N 34 M6L C19 O4 DOUB N N 35 M6L C16 C17 SING N N 36 M6L N1 H9 SING N N 37 M6L N3 H16 SING N N 38 M6L C4 H8 SING N N 39 M6L C5 H35 SING N N 40 M6L C7 H11 SING N N 41 M6L C7 H10 SING N N 42 M6L C10 H13 SING N N 43 M6L C15 H19 SING N N 44 M6L C15 H18 SING N N 45 M6L C17 H23 SING N N 46 M6L C17 H22 SING N N 47 M6L C17 H21 SING N N 48 M6L C20 H29 SING N N 49 M6L C20 H28 SING N N 50 M6L C22 H30 SING N N 51 M6L C24 H32 SING N N 52 M6L C26 H34 SING N N 53 M6L C1 H2 SING N N 54 M6L C1 H1 SING N N 55 M6L C1 H3 SING N N 56 M6L C11 H14 SING N N 57 M6L C12 H15 SING N N 58 M6L C14 H17 SING N N 59 M6L C16 H20 SING N N 60 M6L C18 H25 SING N N 61 M6L C18 H26 SING N N 62 M6L C18 H24 SING N N 63 M6L C2 H5 SING N N 64 M6L C2 H4 SING N N 65 M6L C23 H31 SING N N 66 M6L C25 H33 SING N N 67 M6L C3 H7 SING N N 68 M6L C3 H6 SING N N 69 M6L C9 H12 SING N N 70 M6L N4 H27 SING N N 71 M6L O1 H36 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M6L InChI InChI 1.06 "InChI=1S/C26H36N4O5/c1-4-10-21(23(31)25(33)28-16-20-13-8-9-14-27-20)29-24(32)22(15-18(2)3)30-26(34)35-17-19-11-6-5-7-12-19/h5-9,11-14,18,21-23,31H,4,10,15-17H2,1-3H3,(H,28,33)(H,29,32)(H,30,34)/t21-,22-,23-/m0/s1" M6L InChIKey InChI 1.06 BZCGBQKQJMICGE-VABKMULXSA-N M6L SMILES_CANONICAL CACTVS 3.385 "CCC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)[C@H](O)C(=O)NCc2ccccn2" M6L SMILES CACTVS 3.385 "CCC[CH](NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1)[CH](O)C(=O)NCc2ccccn2" M6L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H]([C@@H](C(=O)NCc1ccccn1)O)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2" M6L SMILES "OpenEye OEToolkits" 2.0.7 "CCCC(C(C(=O)NCc1ccccn1)O)NC(=O)C(CC(C)C)NC(=O)OCc2ccccc2" # _pdbx_chem_comp_identifier.comp_id M6L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(phenylmethyl) ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S},3~{S})-2-oxidanyl-1-oxidanylidene-1-(pyridin-2-ylmethylamino)hexan-3-yl]amino]pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M6L "Create component" 2022-07-25 PDBE M6L "Modify descriptor" 2022-08-22 RCSB M6L "Initial release" 2023-08-02 RCSB M6L "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id M6L _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #