data_M7A # _chem_comp.id M7A _chem_comp.name "7-methyl, adenosine-5'-monophosphate" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H18 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-25 _chem_comp.pdbx_modified_date 2019-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.264 _chem_comp.one_letter_code A _chem_comp.three_letter_code M7A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M7A "C1'" C1 C 0 1 N N R 236.658 251.762 238.961 -0.655 -0.504 0.308 "C1'" M7A 1 M7A C2 C2 C 0 1 Y N N 236.784 250.381 243.247 -4.739 -1.521 0.036 C2 M7A 2 M7A "C2'" C3 C 0 1 N N R 237.374 250.579 238.327 -0.604 -1.970 -0.166 "C2'" M7A 3 M7A "C3'" C4 C 0 1 N N S 236.613 250.438 237.022 0.882 -2.198 -0.534 "C3'" M7A 4 M7A C4 C5 C 0 1 Y N N 235.878 250.955 241.200 -2.911 -0.161 -0.306 C4 M7A 5 M7A "C4'" C6 C 0 1 N N R 236.357 251.880 236.646 1.590 -1.069 0.259 "C4'" M7A 6 M7A C5 C7 C 0 1 Y N N 234.553 250.661 241.748 -3.744 0.955 -0.229 C5 M7A 7 M7A "C5'" C8 C 0 1 N N N 235.191 252.098 235.734 2.929 -0.713 -0.390 "C5'" M7A 8 M7A C6 C9 C 0 1 Y N N 234.442 250.196 243.130 -5.107 0.753 -0.017 C6 M7A 9 M7A C8 C10 C 0 1 N N N 234.252 251.346 239.546 -1.574 1.694 -0.172 C8 M7A 10 M7A C71 C11 C 0 1 N N N 232.223 250.767 240.635 -3.370 3.161 0.561 C71 M7A 11 M7A N1 N1 N 0 1 Y N N 235.599 250.094 243.786 -5.559 -0.493 0.114 N1 M7A 12 M7A N3 N2 N 0 1 Y N N 236.943 250.803 241.997 -3.445 -1.373 -0.169 N3 M7A 13 M7A N6 N3 N 0 1 N N N 233.281 249.889 243.725 -5.977 1.834 0.067 N6 M7A 14 M7A N7 N4 N 0 1 N N N 233.689 250.879 240.771 -2.975 2.121 -0.399 N7 M7A 15 M7A N9 N5 N 0 1 N N N 235.644 251.349 239.956 -1.599 0.256 -0.522 N9 M7A 16 M7A "O2'" O1 O 0 1 N N N 238.711 250.960 238.082 -1.002 -2.850 0.887 "O2'" M7A 17 M7A "O3'" O2 O 0 1 N N N 237.277 249.685 236.036 1.324 -3.484 -0.096 "O3'" M7A 18 M7A "O4'" O3 O 0 1 N N N 236.062 252.502 237.920 0.668 0.040 0.167 "O4'" M7A 19 M7A "O5'" O4 O 0 1 N N N 234.047 251.457 236.259 3.612 0.244 0.423 "O5'" M7A 20 M7A OP1 O5 O 0 1 N N N 231.630 250.905 236.433 6.014 -0.265 -0.164 OP1 M7A 21 M7A OP2 O6 O 0 1 N N N 232.741 251.545 234.180 4.939 1.710 -1.310 OP2 M7A 22 M7A P P1 P 0 1 N N N 232.614 251.723 235.656 5.056 0.845 0.043 P M7A 23 M7A H1 H1 H 0 1 N N N 237.411 252.383 239.467 -0.964 -0.463 1.352 H1 M7A 24 M7A H2 H2 H 0 1 N N N 237.665 250.264 243.861 -5.139 -2.518 0.147 H2 M7A 25 M7A H3 H3 H 0 1 N N N 237.286 249.674 238.947 -1.239 -2.110 -1.041 H3 M7A 26 M7A H4 H4 H 0 1 N N N 235.643 249.969 237.246 1.041 -2.078 -1.606 H4 M7A 27 M7A H5 H5 H 0 1 N N N 237.265 252.315 236.204 1.732 -1.362 1.299 H5 M7A 28 M7A H6 H6 H 0 1 N N N 235.420 251.681 234.742 3.538 -1.612 -0.482 H6 M7A 29 M7A H7 H7 H 0 1 N N N 234.996 253.177 235.642 2.752 -0.290 -1.379 H7 M7A 30 M7A H8 H8 H 0 1 N N N 233.894 252.351 239.278 -0.895 2.238 -0.828 H8 M7A 31 M7A H9 H9 H 0 1 N N N 231.793 250.407 241.581 -2.635 3.965 0.548 H9 M7A 32 M7A H10 H10 H 0 1 N N N 231.801 251.753 240.393 -4.348 3.557 0.285 H10 M7A 33 M7A H11 H11 H 0 1 N N N 231.983 250.057 239.830 -3.421 2.731 1.561 H11 M7A 34 M7A H12 H12 H 0 1 N N N 233.455 249.599 244.666 -5.671 2.722 -0.175 H12 M7A 35 M7A H13 H13 H 0 1 N N N 232.686 250.693 243.729 -6.890 1.700 0.366 H13 M7A 36 M7A H14 H14 H 0 1 N N N 239.173 251.044 238.908 -0.989 -3.786 0.643 H14 M7A 37 M7A H15 H15 H 0 1 N N N 237.400 248.795 236.346 0.847 -4.222 -0.499 H15 M7A 38 M7A H17 H17 H 0 1 N N N 232.131 250.878 233.887 4.327 2.456 -1.247 H17 M7A 39 M7A OP3 OP3 O 0 1 N Y N 232.351 253.269 235.961 5.577 1.787 1.239 OP3 M7A 40 M7A H18 H18 H 0 1 N N N 234.065 250.655 238.711 -1.295 1.830 0.873 H18 M7A 41 M7A H16 H16 H 0 1 N N N 231.627 253.353 236.570 6.444 2.184 1.078 H16 M7A 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M7A OP2 P SING N N 1 M7A P "O5'" SING N N 2 M7A P OP1 DOUB N N 3 M7A "C5'" "O5'" SING N N 4 M7A "C5'" "C4'" SING N N 5 M7A "O3'" "C3'" SING N N 6 M7A "C4'" "C3'" SING N N 7 M7A "C4'" "O4'" SING N N 8 M7A "C3'" "C2'" SING N N 9 M7A "O4'" "C1'" SING N N 10 M7A "O2'" "C2'" SING N N 11 M7A "C2'" "C1'" SING N N 12 M7A "C1'" N9 SING N N 13 M7A C8 N9 SING N N 14 M7A C8 N7 SING N N 15 M7A N9 C4 SING N N 16 M7A C71 N7 SING N N 17 M7A N7 C5 SING N N 18 M7A C4 C5 DOUB Y N 19 M7A C4 N3 SING Y N 20 M7A C5 C6 SING Y N 21 M7A N3 C2 DOUB Y N 22 M7A C6 N6 SING N N 23 M7A C6 N1 DOUB Y N 24 M7A C2 N1 SING Y N 25 M7A "C1'" H1 SING N N 26 M7A C2 H2 SING N N 27 M7A "C2'" H3 SING N N 28 M7A "C3'" H4 SING N N 29 M7A "C4'" H5 SING N N 30 M7A "C5'" H6 SING N N 31 M7A "C5'" H7 SING N N 32 M7A C8 H8 SING N N 33 M7A C71 H9 SING N N 34 M7A C71 H10 SING N N 35 M7A C71 H11 SING N N 36 M7A N6 H12 SING N N 37 M7A N6 H13 SING N N 38 M7A "O2'" H14 SING N N 39 M7A "O3'" H15 SING N N 40 M7A OP2 H17 SING N N 41 M7A P OP3 SING N N 42 M7A C8 H18 SING N N 43 M7A OP3 H16 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M7A InChI InChI 1.03 "InChI=1S/C11H18N5O7P/c1-15-4-16(10-6(15)9(12)13-3-14-10)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3,5,7-8,11,17-18H,2,4H2,1H3,(H2,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1" M7A InChIKey InChI 1.03 FKHMVBQIIIBSCT-IOSLPCCCSA-N M7A SMILES_CANONICAL CACTVS 3.385 "CN1CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c3ncnc(N)c13" M7A SMILES CACTVS 3.385 "CN1CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c3ncnc(N)c13" M7A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CN(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" M7A SMILES "OpenEye OEToolkits" 2.0.6 "CN1CN(c2c1c(ncn2)N)C3C(C(C(O3)COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id M7A _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-7-methyl-8~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M7A "Create component" 2017-09-25 EBI M7A "Initial release" 2018-01-24 RCSB M7A "Modify one letter code" 2019-05-02 EBI ##