data_M88 # _chem_comp.id M88 _chem_comp.name "1-(8Z-hexadecenoyl)-sn-glycerol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H36 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2,3-dihydroxypropyl (Z)-hexadec-8-enoate; [(2S)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-8-enoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-03 _chem_comp.pdbx_modified_date 2023-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 328.487 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M88 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6SSS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M88 C07 C1 C 0 1 N N N 32.121 18.383 -42.369 -5.063 -1.318 0.665 C07 M88 1 M88 C08 C2 C 0 1 N N N 31.035 17.341 -42.533 -4.703 -2.763 0.434 C08 M88 2 M88 C09 C3 C 0 1 N N N 30.927 16.302 -41.675 -3.606 -3.070 -0.212 C09 M88 3 M88 C10 C4 C 0 1 N N N 31.886 16.128 -40.517 -2.619 -1.991 -0.576 C10 M88 4 M88 C11 C5 C 0 1 N N N 31.274 15.226 -39.461 -1.232 -2.373 -0.056 C11 M88 5 M88 C12 C6 C 0 1 N N N 32.115 15.181 -38.195 -0.229 -1.278 -0.424 C12 M88 6 M88 C13 C7 C 0 1 N N N 31.310 14.970 -36.925 1.158 -1.660 0.095 C13 M88 7 M88 C14 C8 C 0 1 N N N 31.674 15.926 -35.802 2.161 -0.564 -0.273 C14 M88 8 M88 C15 C9 C 0 1 N N N 31.543 15.253 -34.447 3.548 -0.946 0.247 C15 M88 9 M88 C16 C10 C 0 1 N N N 31.379 16.164 -33.240 4.535 0.133 -0.117 C16 M88 10 M88 O17 O1 O 0 1 N N N 31.628 17.354 -33.299 4.167 1.107 -0.729 O17 M88 11 M88 O18 O2 O 0 1 N N N 30.948 15.588 -32.028 5.824 0.011 0.240 O18 M88 12 M88 C19 C11 C 0 1 N N N 29.712 16.054 -31.530 6.718 1.089 -0.144 C19 M88 13 M88 C20 C12 C 0 1 N N S 28.800 14.858 -31.341 8.133 0.775 0.345 C20 M88 14 M88 O21 O3 O 0 1 N N N 29.578 13.777 -30.884 8.625 -0.383 -0.331 O21 M88 15 M88 C22 C13 C 0 1 N N N 27.698 15.071 -30.326 9.050 1.965 0.052 C22 M88 16 M88 O23 O4 O 0 1 N N N 26.648 14.182 -30.643 10.342 1.720 0.611 O23 M88 17 M88 H2 H1 H 0 1 N N N 33.182 18.100 -42.430 -4.994 -1.092 1.729 H2 M88 18 M88 H1 H2 H 0 1 N N N 31.988 19.398 -42.772 -4.373 -0.680 0.113 H1 M88 19 M88 H081 H4 H 0 0 N N N 30.334 17.429 -43.350 -5.351 -3.546 0.801 H081 M88 20 M88 H091 H5 H 0 0 N N N 30.138 15.579 -41.819 -3.409 -4.097 -0.484 H091 M88 21 M88 H101 H6 H 0 0 N N N 32.820 15.677 -40.883 -2.583 -1.882 -1.659 H101 M88 22 M88 H102 H7 H 0 0 N N N 32.103 17.111 -40.074 -2.929 -1.048 -0.125 H102 M88 23 M88 H112 H8 H 0 0 N N N 30.272 15.603 -39.209 -1.267 -2.483 1.028 H112 M88 24 M88 H111 H9 H 0 0 N N N 31.190 14.208 -39.869 -0.922 -3.316 -0.506 H111 M88 25 M88 H122 H10 H 0 0 N N N 32.836 14.356 -38.288 -0.193 -1.168 -1.508 H122 M88 26 M88 H121 H11 H 0 0 N N N 32.657 16.134 -38.106 -0.539 -0.335 0.026 H121 M88 27 M88 H131 H12 H 0 0 N N N 30.245 15.105 -37.163 1.122 -1.769 1.179 H131 M88 28 M88 H132 H13 H 0 0 N N N 31.480 13.942 -36.574 1.468 -2.603 -0.355 H132 M88 29 M88 H142 H14 H 0 0 N N N 32.713 16.261 -35.938 2.196 -0.454 -1.357 H142 M88 30 M88 H141 H15 H 0 0 N N N 31.001 16.795 -35.838 1.850 0.379 0.177 H141 M88 31 M88 H151 H16 H 0 0 N N N 30.664 14.593 -34.487 3.512 -1.056 1.330 H151 M88 32 M88 H152 H17 H 0 0 N N N 32.448 14.649 -34.287 3.858 -1.889 -0.204 H152 M88 33 M88 H192 H18 H 0 0 N N N 29.866 16.562 -30.566 6.722 1.188 -1.230 H192 M88 34 M88 H191 H19 H 0 0 N N N 29.262 16.757 -32.247 6.377 2.022 0.305 H191 M88 35 M88 H201 H20 H 0 0 N N N 28.342 14.610 -32.310 8.114 0.588 1.419 H201 M88 36 M88 H211 H21 H 0 0 N N N 29.022 13.017 -30.760 8.670 -0.288 -1.293 H211 M88 37 M88 H222 H22 H 0 0 N N N 28.074 14.861 -29.314 9.140 2.097 -1.027 H222 M88 38 M88 H221 H23 H 0 0 N N N 27.338 16.109 -30.375 8.627 2.867 0.494 H221 M88 39 M88 H231 H24 H 0 0 N N N 25.939 14.293 -30.020 10.976 2.435 0.463 H231 M88 40 M88 C06 C06 C 0 1 N N N ? ? ? -6.492 -1.064 0.181 C06 M88 41 M88 C05 C05 C 0 1 N N N ? ? ? -6.856 0.403 0.415 C05 M88 42 M88 C04 C04 C 0 1 N N N ? ? ? -8.285 0.657 -0.069 C04 M88 43 M88 C03 C03 C 0 1 N N N ? ? ? -8.650 2.125 0.165 C03 M88 44 M88 C02 C02 C 0 1 N N N ? ? ? -10.079 2.379 -0.319 C02 M88 45 M88 C01 C01 C 0 1 N N N ? ? ? -10.443 3.846 -0.085 C01 M88 46 M88 H3 H3 H 0 1 N N N ? ? ? -6.560 -1.290 -0.883 H3 M88 47 M88 H4 H25 H 0 1 N N N ? ? ? -7.181 -1.702 0.733 H4 M88 48 M88 H5 H26 H 0 1 N N N ? ? ? -6.788 0.629 1.479 H5 M88 49 M88 H6 H27 H 0 1 N N N ? ? ? -6.167 1.042 -0.137 H6 M88 50 M88 H7 H28 H 0 1 N N N ? ? ? -8.354 0.432 -1.133 H7 M88 51 M88 H8 H29 H 0 1 N N N ? ? ? -8.975 0.019 0.483 H8 M88 52 M88 H9 H30 H 0 1 N N N ? ? ? -8.581 2.350 1.230 H9 M88 53 M88 H10 H31 H 0 1 N N N ? ? ? -7.960 2.763 -0.387 H10 M88 54 M88 H11 H32 H 0 1 N N N ? ? ? -10.147 2.153 -1.383 H11 M88 55 M88 H12 H33 H 0 1 N N N ? ? ? -10.768 1.740 0.233 H12 M88 56 M88 H13 H34 H 0 1 N N N ? ? ? -9.754 4.484 -0.637 H13 M88 57 M88 H14 H35 H 0 1 N N N ? ? ? -11.461 4.027 -0.430 H14 M88 58 M88 H15 H36 H 0 1 N N N ? ? ? -10.375 4.072 0.980 H15 M88 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M88 C08 C07 SING N N 1 M88 C08 C09 DOUB N Z 2 M88 C09 C10 SING N N 3 M88 C10 C11 SING N N 4 M88 C11 C12 SING N N 5 M88 C12 C13 SING N N 6 M88 C13 C14 SING N N 7 M88 C14 C15 SING N N 8 M88 C15 C16 SING N N 9 M88 O17 C16 DOUB N N 10 M88 C16 O18 SING N N 11 M88 O18 C19 SING N N 12 M88 C19 C20 SING N N 13 M88 C20 O21 SING N N 14 M88 C20 C22 SING N N 15 M88 O23 C22 SING N N 16 M88 C07 H2 SING N N 17 M88 C07 H1 SING N N 18 M88 C08 H081 SING N N 19 M88 C09 H091 SING N N 20 M88 C10 H101 SING N N 21 M88 C10 H102 SING N N 22 M88 C11 H112 SING N N 23 M88 C11 H111 SING N N 24 M88 C12 H122 SING N N 25 M88 C12 H121 SING N N 26 M88 C13 H131 SING N N 27 M88 C13 H132 SING N N 28 M88 C14 H142 SING N N 29 M88 C14 H141 SING N N 30 M88 C15 H151 SING N N 31 M88 C15 H152 SING N N 32 M88 C19 H192 SING N N 33 M88 C19 H191 SING N N 34 M88 C20 H201 SING N N 35 M88 O21 H211 SING N N 36 M88 C22 H222 SING N N 37 M88 C22 H221 SING N N 38 M88 O23 H231 SING N N 39 M88 C07 C06 SING N N 40 M88 C06 C05 SING N N 41 M88 C05 C04 SING N N 42 M88 C04 C03 SING N N 43 M88 C03 C02 SING N N 44 M88 C02 C01 SING N N 45 M88 C06 H3 SING N N 46 M88 C06 H4 SING N N 47 M88 C05 H5 SING N N 48 M88 C05 H6 SING N N 49 M88 C04 H7 SING N N 50 M88 C04 H8 SING N N 51 M88 C03 H9 SING N N 52 M88 C03 H10 SING N N 53 M88 C02 H11 SING N N 54 M88 C02 H12 SING N N 55 M88 C01 H13 SING N N 56 M88 C01 H14 SING N N 57 M88 C01 H15 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M88 InChI InChI 1.06 "InChI=1S/C19H36O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(22)23-17-18(21)16-20/h8-9,18,20-21H,2-7,10-17H2,1H3/b9-8-/t18-/m0/s1" M88 InChIKey InChI 1.06 CRXZGWVXXGFOLB-GIFJBRJJSA-N M88 SMILES_CANONICAL CACTVS 3.385 "CCCCCCC\C=C/CCCCCCC(=O)OC[C@@H](O)CO" M88 SMILES CACTVS 3.385 "CCCCCCCC=CCCCCCCC(=O)OC[CH](O)CO" M88 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCC/C=C\CCCCCCC(=O)OC[C@H](CO)O" M88 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCC=CCCCCCCC(=O)OCC(CO)O" # _pdbx_chem_comp_identifier.comp_id M88 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S})-2,3-bis(oxidanyl)propyl] (~{Z})-hexadec-8-enoate" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 M88 "2,3-dihydroxypropyl (Z)-hexadec-8-enoate" PUBCHEM ? 2 M88 "[(2S)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-8-enoate" PUBCHEM ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M88 "Create component" 2018-01-03 EBI M88 "Initial release" 2021-02-03 RCSB M88 "Modify name" 2023-09-16 PDBE M88 "Modify synonyms" 2023-09-16 PDBE M88 "Modify model coordinates code" 2023-09-16 PDBE #