data_M8E
#
_chem_comp.id M8E
_chem_comp.name "5'-{[4-(aminooxy)butyl](methyl)amino}-5'-deoxy-8-ethenyladenosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H27 N7 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-07-31
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 393.441
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M8E
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3DZ6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M8E N1 N1 N 0 1 N N N -22.185 -5.882 10.147 -8.776 2.844 -0.633 N1 M8E 1
M8E O1 O1 O 0 1 N N N -20.972 -6.721 9.947 -7.919 1.919 0.110 O1 M8E 2
M8E C6 C6 C 0 1 N N N -18.461 -7.632 8.901 -4.684 0.110 -0.499 C6 M8E 3
M8E C7 C7 C 0 1 N N N -17.251 -8.684 8.642 -3.868 -0.851 0.369 C7 M8E 4
M8E N2 N2 N 0 1 N N N -16.701 -8.478 7.270 -2.666 -1.272 -0.364 N2 M8E 5
M8E C8 C8 C 0 1 N N N -16.596 -9.829 6.600 -3.022 -2.079 -1.538 C8 M8E 6
M8E "C5'" "C5'" C 0 1 N N N -15.354 -7.823 7.387 -1.742 -2.001 0.515 "C5'" M8E 7
M8E "C4'" "C4'" C 0 1 N N R -14.661 -7.556 6.057 -0.407 -2.204 -0.204 "C4'" M8E 8
M8E "O4'" "O4'" O 0 1 N N N -15.630 -6.985 5.100 0.237 -0.936 -0.408 "O4'" M8E 9
M8E "C1'" "C1'" C 0 1 N N R -15.156 -5.704 4.670 1.658 -1.162 -0.299 "C1'" M8E 10
M8E N6 N6 N 0 1 Y N N -16.370 -4.879 4.414 2.357 0.087 0.014 N6 M8E 11
M8E C13 C13 C 0 1 Y N N -17.479 -4.809 5.219 3.524 0.530 -0.556 C13 M8E 12
M8E N3 N3 N 0 1 Y N N -17.697 -5.461 6.390 4.350 0.058 -1.484 N3 M8E 13
M8E C9 C9 C 0 1 Y N N -18.907 -5.147 6.909 5.425 0.734 -1.832 C9 M8E 14
M8E N4 N4 N 0 1 Y N N -19.859 -4.305 6.408 5.739 1.896 -1.291 N4 M8E 15
M8E C10 C10 C 0 1 Y N N -19.598 -3.670 5.225 4.975 2.449 -0.355 C10 M8E 16
M8E N7 N7 N 0 1 N N N -20.529 -2.839 4.725 5.312 3.668 0.207 N7 M8E 17
M8E C11 C11 C 0 1 Y N N -18.351 -3.920 4.585 3.813 1.766 0.052 C11 M8E 18
M8E N5 N5 N 0 1 Y N N -17.805 -3.447 3.420 2.832 2.016 0.946 N5 M8E 19
M8E C12 C12 C 0 1 Y N N -16.645 -4.025 3.350 1.963 1.033 0.928 C12 M8E 20
M8E "C2'" "C2'" C 0 1 N N R -14.234 -5.246 5.822 1.776 -2.163 0.879 "C2'" M8E 21
M8E "O2'" "O2'" O 0 1 N N N -13.386 -4.165 5.493 2.979 -2.928 0.780 "O2'" M8E 22
M8E "C3'" "C3'" C 0 1 N N S -13.535 -6.553 6.193 0.532 -3.061 0.667 "C3'" M8E 23
M8E "O3'" "O3'" O 0 1 N N N -12.554 -6.863 5.234 0.893 -4.262 -0.019 "O3'" M8E 24
M8E C5 C5 C 0 1 N N N -19.773 -8.168 8.342 -5.935 0.549 0.265 C5 M8E 25
M8E C4 C4 C 0 1 N N N -20.909 -7.158 8.581 -6.751 1.509 -0.603 C4 M8E 26
M8E C15 C15 C 0 1 N N N -14.689 -3.184 2.200 0.470 1.933 2.616 C15 M8E 27
M8E C14 C14 C 0 1 N N N -15.642 -3.826 2.241 0.753 0.954 1.762 C14 M8E 28
M8E HN1 HN1 H 0 1 N N N -22.304 -5.694 11.122 -9.048 2.451 -1.522 HN1 M8E 29
M8E HN1A HN1A H 0 0 N N N -22.079 -5.020 9.652 -9.585 3.103 -0.089 HN1A M8E 30
M8E H6 H6 H 0 1 N N N -18.571 -7.472 9.984 -4.079 0.984 -0.739 H6 M8E 31
M8E H6A H6A H 0 1 N N N -18.221 -6.686 8.394 -4.978 -0.394 -1.420 H6A M8E 32
M8E H7 H7 H 0 1 N N N -16.456 -8.520 9.385 -3.574 -0.347 1.290 H7 M8E 33
M8E H7A H7A H 0 1 N N N -17.631 -9.712 8.735 -4.472 -1.725 0.610 H7A M8E 34
M8E H8 H8 H 0 1 N N N -16.570 -9.696 5.508 -3.651 -1.490 -2.207 H8 M8E 35
M8E H8A H8A H 0 1 N N N -15.675 -10.331 6.930 -2.114 -2.378 -2.063 H8A M8E 36
M8E H8B H8B H 0 1 N N N -17.467 -10.443 6.874 -3.566 -2.968 -1.218 H8B M8E 37
M8E "H5'" "H5'" H 0 1 N N N -15.493 -6.857 7.894 -1.579 -1.427 1.427 "H5'" M8E 38
M8E "H5'A" "H5'A" H 0 0 N N N -14.711 -8.522 7.942 -2.170 -2.971 0.768 "H5'A" M8E 39
M8E "H4'" "H4'" H 0 1 N N N -14.256 -8.518 5.710 -0.575 -2.693 -1.164 "H4'" M8E 40
M8E "H1'" "H1'" H 0 1 N N N -14.571 -5.657 3.739 2.049 -1.599 -1.218 "H1'" M8E 41
M8E H9 H9 H 0 1 N N N -19.153 -5.627 7.845 6.076 0.321 -2.589 H9 M8E 42
M8E HN7 HN7 H 0 1 N N N -21.206 -2.633 5.431 6.115 4.129 -0.081 HN7 M8E 43
M8E HN7A HN7A H 0 0 N N N -20.092 -1.991 4.425 4.746 4.061 0.889 HN7A M8E 44
M8E "H2'" "H2'" H 0 1 N N N -14.768 -4.798 6.674 1.723 -1.645 1.836 "H2'" M8E 45
M8E "HO2'" "HO2'" H 0 0 N N N -13.196 -3.662 6.276 3.098 -3.568 1.495 "HO2'" M8E 46
M8E "H3'" "H3'" H 0 1 N N N -13.046 -6.526 7.178 0.062 -3.292 1.622 "H3'" M8E 47
M8E "HO3'" "HO3'" H 0 0 N N N -12.959 -6.933 4.377 1.485 -4.839 0.484 "HO3'" M8E 48
M8E H5 H5 H 0 1 N N N -19.662 -8.338 7.261 -6.539 -0.326 0.505 H5 M8E 49
M8E H5A H5A H 0 1 N N N -20.020 -9.111 8.851 -5.641 1.052 1.186 H5A M8E 50
M8E H4 H4 H 0 1 N N N -21.864 -7.639 8.323 -7.045 1.006 -1.524 H4 M8E 51
M8E H4A H4A H 0 1 N N N -20.715 -6.276 7.953 -6.147 2.384 -0.844 H4A M8E 52
M8E H15 H15 H 0 1 N N N -14.166 -3.244 1.257 1.128 2.785 2.697 H15 M8E 53
M8E H15A H15A H 0 0 N N N -14.349 -2.578 3.027 -0.418 1.875 3.228 H15A M8E 54
M8E H14 H14 H 0 1 N N N -15.854 -4.377 1.337 0.095 0.101 1.681 H14 M8E 55
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M8E N1 O1 SING N N 1
M8E O1 C4 SING N N 2
M8E C6 C7 SING N N 3
M8E C6 C5 SING N N 4
M8E C7 N2 SING N N 5
M8E N2 C8 SING N N 6
M8E N2 "C5'" SING N N 7
M8E "C5'" "C4'" SING N N 8
M8E "C4'" "O4'" SING N N 9
M8E "C4'" "C3'" SING N N 10
M8E "O4'" "C1'" SING N N 11
M8E "C1'" N6 SING N N 12
M8E "C1'" "C2'" SING N N 13
M8E N6 C13 SING Y N 14
M8E N6 C12 SING Y N 15
M8E C13 N3 DOUB Y N 16
M8E C13 C11 SING Y N 17
M8E N3 C9 SING Y N 18
M8E C9 N4 DOUB Y N 19
M8E N4 C10 SING Y N 20
M8E C10 N7 SING N N 21
M8E C10 C11 DOUB Y N 22
M8E C11 N5 SING Y N 23
M8E N5 C12 DOUB Y N 24
M8E C12 C14 SING N N 25
M8E "C2'" "O2'" SING N N 26
M8E "C2'" "C3'" SING N N 27
M8E "C3'" "O3'" SING N N 28
M8E C5 C4 SING N N 29
M8E C15 C14 DOUB N N 30
M8E N1 HN1 SING N N 31
M8E N1 HN1A SING N N 32
M8E C6 H6 SING N N 33
M8E C6 H6A SING N N 34
M8E C7 H7 SING N N 35
M8E C7 H7A SING N N 36
M8E C8 H8 SING N N 37
M8E C8 H8A SING N N 38
M8E C8 H8B SING N N 39
M8E "C5'" "H5'" SING N N 40
M8E "C5'" "H5'A" SING N N 41
M8E "C4'" "H4'" SING N N 42
M8E "C1'" "H1'" SING N N 43
M8E C9 H9 SING N N 44
M8E N7 HN7 SING N N 45
M8E N7 HN7A SING N N 46
M8E "C2'" "H2'" SING N N 47
M8E "O2'" "HO2'" SING N N 48
M8E "C3'" "H3'" SING N N 49
M8E "O3'" "HO3'" SING N N 50
M8E C5 H5 SING N N 51
M8E C5 H5A SING N N 52
M8E C4 H4 SING N N 53
M8E C4 H4A SING N N 54
M8E C15 H15 SING N N 55
M8E C15 H15A SING N N 56
M8E C14 H14 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M8E SMILES ACDLabs 10.04 "n2c1c(ncnc1n(c2\C=C)C3OC(C(O)C3O)CN(CCCCON)C)N"
M8E SMILES_CANONICAL CACTVS 3.341 "CN(CCCCON)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(C=C)nc3c(N)ncnc23"
M8E SMILES CACTVS 3.341 "CN(CCCCON)C[CH]1O[CH]([CH](O)[CH]1O)n2c(C=C)nc3c(N)ncnc23"
M8E SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[N@@](CCCCON)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2c(nc3c2ncnc3N)C=C)O)O"
M8E SMILES "OpenEye OEToolkits" 1.5.0 "CN(CCCCON)CC1C(C(C(O1)n2c(nc3c2ncnc3N)C=C)O)O"
M8E InChI InChI 1.03 "InChI=1S/C17H27N7O4/c1-3-11-22-12-15(18)20-9-21-16(12)24(11)17-14(26)13(25)10(28-17)8-23(2)6-4-5-7-27-19/h3,9-10,13-14,17,25-26H,1,4-8,19H2,2H3,(H2,18,20,21)/t10-,13-,14-,17-/m1/s1"
M8E InChIKey InChI 1.03 XUKYGMIDWKBMIW-IWCJZZDYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M8E "SYSTEMATIC NAME" ACDLabs 10.04 "5'-{[4-(aminooxy)butyl](methyl)amino}-5'-deoxy-8-ethenyladenosine"
M8E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2-(6-amino-8-ethenyl-purin-9-yl)-5-[(4-aminooxybutyl-methyl-amino)methyl]oxolane-3,4-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M8E "Create component" 2008-07-31 RCSB
M8E "Modify aromatic_flag" 2011-06-04 RCSB
M8E "Modify descriptor" 2011-06-04 RCSB
#