data_M8R # _chem_comp.id M8R _chem_comp.name "(2~{S})-2-(9~{H}-fluoren-9-ylmethoxycarbonylamino)-3-(4-oxidanylidene-5~{H}-pyrimidin-2-yl)propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H19 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-23 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.403 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M8R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HU2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M8R C10 C1 C 0 1 N N N N N N -7.352 -33.976 8.577 -3.563 -2.970 -0.252 C10 M8R 1 M8R C17 C2 C 0 1 N N N N N N -12.646 -32.476 8.443 1.514 -1.184 0.063 C17 M8R 2 M8R C20 C3 C 0 1 Y N N N N N -11.094 -33.628 11.144 1.732 1.727 -1.326 C20 M8R 3 M8R C21 C4 C 0 1 Y N N N N N -10.937 -33.779 12.521 1.976 3.087 -1.254 C21 M8R 4 M8R C22 C5 C 0 1 Y N N N N N -12.029 -34.201 13.318 3.157 3.552 -0.703 C22 M8R 5 M8R C24 C6 C 0 1 Y N N N N N -14.246 -34.237 9.119 3.994 -1.049 -0.134 C24 M8R 6 M8R C26 C7 C 0 1 Y N N N N N -13.425 -34.319 11.333 3.852 1.290 -0.282 C26 M8R 7 M8R C28 C8 C 0 1 Y N N N N N -16.489 -34.776 8.389 5.800 -2.322 0.786 C28 M8R 8 M8R C02 C9 C 0 1 N N N N N N -8.501 -29.226 5.384 -2.897 2.283 1.084 C02 M8R 9 M8R C04 C10 C 0 1 N N N N N N -8.951 -29.630 4.127 -3.898 3.367 0.724 C04 M8R 10 M8R C05 C11 C 0 1 N N N N N N -8.721 -30.949 3.763 -5.108 2.913 -0.070 C05 M8R 11 M8R C07 C12 C 0 1 N N N N N N -7.691 -31.345 5.781 -4.253 0.766 -0.018 C07 M8R 12 M8R C08 C13 C 0 1 N N N N N N -6.982 -32.319 6.718 -4.463 -0.667 -0.438 C08 M8R 13 M8R C09 C14 C 0 1 N N S N N N -8.003 -33.190 7.452 -3.295 -1.520 0.060 C09 M8R 14 M8R C14 C15 C 0 1 N N N N N N -10.390 -32.578 7.776 -0.868 -1.311 -0.017 C14 M8R 15 M8R C18 C16 C 0 1 N N N N N N -12.813 -33.842 9.120 2.684 -0.676 -0.782 C18 M8R 16 M8R C19 C17 C 0 1 Y N N N N N -12.333 -33.894 10.537 2.664 0.832 -0.843 C19 M8R 17 M8R C23 C18 C 0 1 Y N N N N N -13.267 -34.465 12.723 4.097 2.664 -0.224 C23 M8R 18 M8R C25 C19 C 0 1 Y N N N N N -14.603 -34.526 10.440 4.672 0.132 0.153 C25 M8R 19 M8R C27 C20 C 0 1 Y N N N N N -15.187 -34.366 8.095 4.557 -2.268 0.181 C27 M8R 20 M8R C29 C21 C 0 1 Y N N N N N -16.852 -35.059 9.718 6.481 -1.153 1.076 C29 M8R 21 M8R C30 C22 C 0 1 Y N N N N N -15.907 -34.941 10.734 5.926 0.071 0.763 C30 M8R 22 M8R N01 N1 N 0 1 N N N N N N -7.889 -30.098 6.170 -3.174 1.037 0.664 N01 M8R 23 M8R N06 N2 N 0 1 N N N N N N -8.100 -31.769 4.589 -5.187 1.650 -0.373 N06 M8R 24 M8R N13 N3 N 0 1 N N N N N N -8.992 -32.319 8.034 -2.061 -1.097 -0.607 N13 M8R 25 M8R O03 O1 O 0 1 N N N N N N -8.668 -28.106 5.750 -1.891 2.530 1.717 O03 M8R 26 M8R O11 O2 O 0 1 N N N N N N -7.284 -33.473 9.728 -4.647 -3.576 0.256 O11 M8R 27 M8R O12 O3 O 0 1 N N N N N N -6.904 -35.131 8.354 -2.804 -3.585 -0.963 O12 M8R 28 M8R O15 O4 O 0 1 N N N N N N -10.712 -33.260 6.862 -0.816 -1.855 1.068 O15 M8R 29 M8R O16 O5 O 0 1 N N N N N N -11.338 -32.012 8.624 0.266 -0.922 -0.631 O16 M8R 30 M8R H1 H1 H 0 1 N N N N N N -13.352 -31.760 8.888 1.621 -2.257 0.224 H1 M8R 31 M8R H2 H2 H 0 1 N N N N N N -12.853 -32.574 7.367 1.510 -0.670 1.025 H2 M8R 32 M8R H3 H3 H 0 1 N N N N N N -10.259 -33.305 10.540 0.809 1.366 -1.756 H3 M8R 33 M8R H4 H4 H 0 1 N N N N N N -9.981 -33.574 12.981 1.243 3.786 -1.628 H4 M8R 34 M8R H5 H5 H 0 1 N N N N N N -11.906 -34.319 14.384 3.344 4.614 -0.650 H5 M8R 35 M8R H6 H6 H 0 1 N N N N N N -17.216 -34.876 7.597 6.239 -3.277 1.033 H6 M8R 36 M8R H7 H7 H 0 1 N N N N N N -8.460 -28.990 3.379 -4.249 3.826 1.648 H7 M8R 37 M8R H8 H8 H 0 1 N N N N N N -10.038 -29.463 4.096 -3.379 4.130 0.143 H8 M8R 38 M8R H9 H9 H 0 1 N N N N N N -9.052 -31.306 2.799 -5.875 3.611 -0.373 H9 M8R 39 M8R H10 H10 H 0 1 N N N N N N -6.311 -32.963 6.131 -5.393 -1.039 -0.009 H10 M8R 40 M8R H11 H11 H 0 1 N N N N N N -6.394 -31.751 7.454 -4.516 -0.722 -1.525 H11 M8R 41 M8R H12 H12 H 0 1 N N N N N N -8.470 -33.886 6.739 -3.186 -1.394 1.138 H12 M8R 42 M8R H13 H13 H 0 1 N N N N N N -12.247 -34.581 8.535 2.629 -1.095 -1.787 H13 M8R 43 M8R H14 H14 H 0 1 N N N N N N -14.102 -34.781 13.331 5.016 3.031 0.209 H14 M8R 44 M8R H15 H15 H 0 1 N N N N N N -14.907 -34.148 7.075 4.027 -3.182 -0.045 H15 M8R 45 M8R H16 H16 H 0 1 N N N N N N -17.861 -35.367 9.950 7.451 -1.199 1.548 H16 M8R 46 M8R H17 H17 H 0 1 N N N N N N -16.181 -35.171 11.753 6.462 0.981 0.990 H17 M8R 47 M8R H18 H18 H 0 1 N N N N N N -8.716 -31.548 8.607 -2.103 -0.663 -1.473 H18 M8R 48 M8R H19 H19 H 0 1 N N N N N N -6.868 -34.089 10.319 -4.777 -4.507 0.028 H19 M8R 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M8R C05 C04 SING N N 1 M8R C05 N06 DOUB N N 2 M8R C04 C02 SING N N 3 M8R N06 C07 SING N N 4 M8R C02 O03 DOUB N N 5 M8R C02 N01 SING N N 6 M8R C07 N01 DOUB N N 7 M8R C07 C08 SING N N 8 M8R C08 C09 SING N N 9 M8R O15 C14 DOUB N N 10 M8R C09 N13 SING N N 11 M8R C09 C10 SING N N 12 M8R C14 N13 SING N N 13 M8R C14 O16 SING N N 14 M8R C27 C28 DOUB Y N 15 M8R C27 C24 SING Y N 16 M8R O12 C10 DOUB N N 17 M8R C28 C29 SING Y N 18 M8R C17 O16 SING N N 19 M8R C17 C18 SING N N 20 M8R C10 O11 SING N N 21 M8R C24 C18 SING N N 22 M8R C24 C25 DOUB Y N 23 M8R C18 C19 SING N N 24 M8R C29 C30 DOUB Y N 25 M8R C25 C30 SING Y N 26 M8R C25 C26 SING N N 27 M8R C19 C20 SING Y N 28 M8R C19 C26 DOUB Y N 29 M8R C20 C21 DOUB Y N 30 M8R C26 C23 SING Y N 31 M8R C21 C22 SING Y N 32 M8R C23 C22 DOUB Y N 33 M8R C17 H1 SING N N 34 M8R C17 H2 SING N N 35 M8R C20 H3 SING N N 36 M8R C21 H4 SING N N 37 M8R C22 H5 SING N N 38 M8R C28 H6 SING N N 39 M8R C04 H7 SING N N 40 M8R C04 H8 SING N N 41 M8R C05 H9 SING N N 42 M8R C08 H10 SING N N 43 M8R C08 H11 SING N N 44 M8R C09 H12 SING N N 45 M8R C18 H13 SING N N 46 M8R C23 H14 SING N N 47 M8R C27 H15 SING N N 48 M8R C29 H16 SING N N 49 M8R C30 H17 SING N N 50 M8R N13 H18 SING N N 51 M8R O11 H19 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M8R InChI InChI 1.06 "InChI=1S/C22H19N3O5/c26-20-9-10-23-19(25-20)11-18(21(27)28)24-22(29)30-12-17-15-7-3-1-5-13(15)14-6-2-4-8-16(14)17/h1-8,10,17-18H,9,11-12H2,(H,24,29)(H,27,28)/t18-/m0/s1" M8R InChIKey InChI 1.06 SRYLOGZQEQKDOT-SFHVURJKSA-N M8R SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H](CC1=NC(=O)CC=N1)NC(=O)OCC2c3ccccc3c4ccccc24" M8R SMILES CACTVS 3.385 "OC(=O)[CH](CC1=NC(=O)CC=N1)NC(=O)OCC2c3ccccc3c4ccccc24" M8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3ccccc3C2COC(=O)N[C@@H](CC4=NC(=O)CC=N4)C(=O)O" M8R SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3ccccc3C2COC(=O)NC(CC4=NC(=O)CC=N4)C(=O)O" # _pdbx_chem_comp_identifier.comp_id M8R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-(9~{H}-fluoren-9-ylmethoxycarbonylamino)-3-(4-oxidanylidene-5~{H}-pyrimidin-2-yl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M8R "Create component" 2022-12-23 PDBJ M8R "Initial release" 2024-01-17 RCSB #