data_M8T # _chem_comp.id M8T _chem_comp.name "2'-fluoro-,3',3'-c-di-AMP" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 F2 N10 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-07 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 662.394 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M8T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6T1X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M8T N N1 N 0 1 Y N N 11.598 -13.598 174.078 -9.916 -0.657 -0.146 N M8T 1 M8T C C1 C 0 1 Y N N 10.914 -12.784 174.904 -9.114 -1.321 0.666 C M8T 2 M8T O O1 O 0 1 N N N 7.747 -10.525 167.372 0.740 2.238 -1.386 O M8T 3 M8T C1 C2 C 0 1 Y N N 9.308 -12.251 173.280 -7.310 0.000 0.135 C1 M8T 4 M8T C10 C3 C 0 1 Y N N 12.776 -10.956 165.261 9.116 1.305 0.646 C10 M8T 5 M8T C11 C4 C 0 1 Y N N 12.249 -9.328 166.866 7.308 -0.018 0.134 C11 M8T 6 M8T C12 C5 C 0 1 Y N N 13.106 -10.015 167.837 8.119 -0.773 -0.730 C12 M8T 7 M8T C13 C6 C 0 1 Y N N 13.793 -11.242 167.373 9.471 -0.411 -0.856 C13 M8T 8 M8T C14 C7 C 0 1 Y N N 12.210 -8.242 168.753 6.127 -1.626 -0.805 C14 M8T 9 M8T C15 C8 C 0 1 N N R 8.746 -7.796 167.894 2.678 0.634 0.041 C15 M8T 10 M8T C16 C9 C 0 1 N N R 9.504 -8.025 166.601 4.174 0.997 0.022 C16 M8T 11 M8T C17 C10 C 0 1 N N R 10.813 -7.298 166.871 4.868 -0.135 0.795 C17 M8T 12 M8T C18 C11 C 0 1 N N R 9.128 -6.353 168.207 2.603 -0.714 0.773 C18 M8T 13 M8T C19 C12 C 0 1 N N N 8.970 -5.988 169.672 1.759 -1.699 -0.038 C19 M8T 14 M8T C2 C13 C 0 1 Y N N 9.997 -13.118 172.320 -8.122 0.737 -0.743 C2 M8T 15 M8T C3 C14 C 0 1 Y N N 11.214 -13.813 172.800 -9.473 0.369 -0.865 C3 M8T 16 M8T C4 C15 C 0 1 Y N N 8.241 -12.210 171.382 -6.133 1.596 -0.828 C4 M8T 17 M8T C5 C16 C 0 1 N N R 7.792 -8.736 172.213 -2.678 -0.635 0.059 C5 M8T 18 M8T C6 C17 C 0 1 N N R 8.027 -9.490 173.509 -4.172 -1.005 0.047 C6 M8T 19 M8T C7 C18 C 0 1 N N R 7.293 -10.798 173.253 -4.871 0.137 0.799 C7 M8T 20 M8T C8 C19 C 0 1 N N R 6.351 -9.125 171.899 -2.609 0.723 0.772 C8 M8T 21 M8T C9 C20 C 0 1 N N N 5.988 -8.972 170.433 -1.766 1.699 -0.052 C9 M8T 22 M8T F6 F1 F 0 1 N N N 8.838 -7.451 165.559 4.385 2.223 0.662 F6 M8T 23 M8T F9 F2 F 0 1 N N N 7.470 -8.821 174.558 -4.378 -2.221 0.708 F9 M8T 24 M8T N1 N2 N 0 1 Y N N 9.805 -12.127 174.530 -7.843 -1.011 0.813 N1 M8T 25 M8T N2 N3 N 0 1 Y N N 8.256 -11.741 172.644 -6.062 0.565 0.060 N2 M8T 26 M8T N3 N4 N 0 1 Y N N 9.291 -13.050 171.175 -7.342 1.696 -1.298 N3 M8T 27 M8T N4 N5 N 0 1 Y N N 13.580 -11.638 166.098 9.918 0.625 -0.154 N4 M8T 28 M8T N5 N6 N 0 1 Y N N 12.126 -9.837 165.620 7.844 1.003 0.795 N5 M8T 29 M8T N6 N7 N 0 1 Y N N 11.746 -8.265 167.489 6.058 -0.579 0.066 N6 M8T 30 M8T N7 N8 N 0 1 Y N N 13.039 -9.297 168.974 7.337 -1.738 -1.271 N7 M8T 31 M8T N9 N9 N 0 1 N N N 14.606 -11.946 168.196 10.318 -1.118 -1.692 N9 M8T 32 M8T O1 O2 O 0 1 N N N 6.222 -10.483 172.353 -3.943 1.220 0.893 O1 M8T 33 M8T O10 O3 O 0 1 N N N 8.030 -7.350 172.363 -1.931 -1.615 0.783 O10 M8T 34 M8T O2 O4 O 0 1 N N N 6.823 -9.780 169.612 -0.644 2.130 0.722 O2 M8T 35 M8T O22 O5 O 0 1 N N N 10.516 -7.743 172.738 -0.748 -2.244 -1.479 O22 M8T 36 M8T O3 O6 O 0 1 N N N 5.413 -9.666 167.496 1.079 4.074 0.313 O3 M8T 37 M8T O4 O7 O 0 1 N N N 9.663 -5.407 172.614 -1.064 -3.947 0.357 O4 M8T 38 M8T O5 O8 O 0 1 N N N 10.491 -6.227 167.769 3.935 -1.212 0.905 O5 M8T 39 M8T O7 O9 O 0 1 N N N 7.361 -8.035 167.733 1.936 1.627 0.751 O7 M8T 40 M8T O8 O10 O 0 1 N N N 9.785 -6.814 170.495 0.646 -2.132 0.747 O8 M8T 41 M8T P P1 P 0 1 N N N 6.821 -9.527 168.024 0.777 2.511 0.068 P M8T 42 M8T P1 P2 P 0 1 N N N 9.524 -6.814 172.082 -0.780 -2.516 0.107 P1 M8T 43 M8T N10 N10 N 0 1 N N N 11.917 -14.635 171.987 -10.321 1.058 -1.715 111 M8T 44 M8T H H1 H 0 1 N N N 11.274 -12.654 175.914 -9.516 -2.148 1.233 H M8T 45 M8T H10 H2 H 0 1 N N N 12.648 -11.326 164.254 9.521 2.137 1.202 H10 M8T 46 M8T H14 H3 H 0 1 N N N 11.959 -7.491 169.488 5.299 -2.267 -1.069 H14 M8T 47 M8T H15 H4 H 0 1 N N N 9.161 -8.452 168.674 2.299 0.534 -0.976 H15 M8T 48 M8T H16 H5 H 0 1 N N N 9.688 -9.099 166.450 4.542 1.037 -1.003 H16 M8T 49 M8T H17 H6 H 0 1 N N N 11.228 -6.913 165.928 5.151 0.214 1.788 H17 M8T 50 M8T H18 H7 H 0 1 N N N 8.487 -5.687 167.611 2.161 -0.574 1.760 H18 M8T 51 M8T H191 H8 H 0 0 N N N 9.263 -4.937 169.814 1.397 -1.208 -0.942 H191 M8T 52 M8T H192 H9 H 0 0 N N N 7.917 -6.117 169.963 2.368 -2.560 -0.312 H192 M8T 53 M8T H4 H10 H 0 1 N N N 7.500 -11.955 170.639 -5.307 2.237 -1.101 H4 M8T 54 M8T H5 H11 H 0 1 N N N 8.448 -9.153 171.435 -2.301 -0.548 -0.960 H5 M8T 55 M8T H6 H12 H 0 1 N N N 9.101 -9.679 173.650 -4.539 -1.065 -0.978 H6 M8T 56 M8T H7 H13 H 0 1 N N N 6.908 -11.202 174.201 -5.155 -0.196 1.797 H7 M8T 57 M8T H8 H14 H 0 1 N N N 5.684 -8.479 172.489 -2.169 0.599 1.762 H8 M8T 58 M8T H91 H15 H 0 1 N N N 6.108 -7.918 170.141 -1.414 1.201 -0.955 H91 M8T 59 M8T H92 H16 H 0 1 N N N 4.940 -9.275 170.289 -2.372 2.562 -0.325 H92 M8T 60 M8T HN9 H17 H 0 1 N N N 14.973 -12.737 167.706 9.981 -1.872 -2.199 HN9 M8T 61 M8T H1 H18 H 0 1 N N N 15.359 -11.362 168.499 11.250 -0.858 -1.770 H1 M8T 62 M8T H2 H19 H 0 1 N N N 11.040 -7.257 173.364 -0.077 -2.755 -1.952 H2 M8T 63 M8T H3 H20 H 0 1 N N N 5.384 -10.362 166.850 0.420 4.667 -0.072 H3 M8T 64 M8T H111 H21 H 0 0 N N N 12.699 -15.009 172.486 -9.985 1.804 -2.234 H111 M8T 65 M8T H9 H22 H 0 1 N N N 11.329 -15.383 171.681 -11.251 0.793 -1.790 H9 M8T 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M8T C10 N5 DOUB Y N 1 M8T C10 N4 SING Y N 2 M8T F6 C16 SING N N 3 M8T N5 C11 SING Y N 4 M8T N4 C13 DOUB Y N 5 M8T C16 C17 SING N N 6 M8T C16 C15 SING N N 7 M8T C11 N6 SING Y N 8 M8T C11 C12 DOUB Y N 9 M8T C17 N6 SING N N 10 M8T C17 O5 SING N N 11 M8T O P DOUB N N 12 M8T C13 C12 SING Y N 13 M8T C13 N9 SING N N 14 M8T N6 C14 SING Y N 15 M8T O3 P SING N N 16 M8T O7 C15 SING N N 17 M8T O7 P SING N N 18 M8T O5 C18 SING N N 19 M8T C12 N7 SING Y N 20 M8T C15 C18 SING N N 21 M8T P O2 SING N N 22 M8T C18 C19 SING N N 23 M8T C14 N7 DOUB Y N 24 M8T O2 C9 SING N N 25 M8T C19 O8 SING N N 26 M8T C9 C8 SING N N 27 M8T O8 P1 SING N N 28 M8T N3 C4 DOUB Y N 29 M8T N3 C2 SING Y N 30 M8T C4 N2 SING Y N 31 M8T C8 C5 SING N N 32 M8T C8 O1 SING N N 33 M8T N10 C3 SING N N 34 M8T P1 O10 SING N N 35 M8T P1 O4 DOUB N N 36 M8T P1 O22 SING N N 37 M8T C5 O10 SING N N 38 M8T C5 C6 SING N N 39 M8T C2 C3 DOUB Y N 40 M8T C2 C1 SING Y N 41 M8T O1 C7 SING N N 42 M8T N2 C7 SING N N 43 M8T N2 C1 SING Y N 44 M8T C3 N SING Y N 45 M8T C7 C6 SING N N 46 M8T C1 N1 DOUB Y N 47 M8T C6 F9 SING N N 48 M8T N C DOUB Y N 49 M8T N1 C SING Y N 50 M8T C H SING N N 51 M8T C10 H10 SING N N 52 M8T C14 H14 SING N N 53 M8T C15 H15 SING N N 54 M8T C16 H16 SING N N 55 M8T C17 H17 SING N N 56 M8T C18 H18 SING N N 57 M8T C19 H191 SING N N 58 M8T C19 H192 SING N N 59 M8T C4 H4 SING N N 60 M8T C5 H5 SING N N 61 M8T C6 H6 SING N N 62 M8T C7 H7 SING N N 63 M8T C8 H8 SING N N 64 M8T C9 H91 SING N N 65 M8T C9 H92 SING N N 66 M8T N9 HN9 SING N N 67 M8T N9 H1 SING N N 68 M8T O22 H2 SING N N 69 M8T O3 H3 SING N N 70 M8T N10 H111 SING N N 71 M8T N10 H9 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M8T InChI InChI 1.03 "InChI=1S/C20H22F2N10O10P2/c21-9-13-7(39-19(9)31-5-29-11-15(23)25-3-27-17(11)31)1-37-43(33,34)42-14-8(2-38-44(35,36)41-13)40-20(10(14)22)32-6-30-12-16(24)26-4-28-18(12)32/h3-10,13-14,19-20H,1-2H2,(H,33,34)(H,35,36)(H2,23,25,27)(H2,24,26,28)/t7-,8-,9-,10-,13-,14-,19-,20-/m1/s1" M8T InChIKey InChI 1.03 LMPBRGUYJGJYOI-QPMBAPTHSA-N M8T SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67" M8T SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67" M8T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)O)O[C@H]([C@@H]5F)n6cnc7c6ncnc7N)O)F)N" M8T SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5F)n6cnc7c6ncnc7N)O)F)N" # _pdbx_chem_comp_identifier.comp_id M8T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M8T "Create component" 2019-10-07 PDBE M8T "Initial release" 2021-05-19 RCSB ##