data_M9Z # _chem_comp.id M9Z _chem_comp.name "~{N}-[6-[3-[4-(aminomethyl)-1,2,3-triazol-1-yl]propylamino]-2,4-bis(oxidanylidene)-1-(phenylmethyl)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 N8 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-10 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 524.595 _chem_comp.one_letter_code ? _chem_comp.three_letter_code M9Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6T37 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal M9Z CAO C1 C 0 1 Y N N 1.175 2.516 10.992 3.807 -3.055 0.584 CAO M9Z 1 M9Z CAP C2 C 0 1 Y N N 0.563 1.902 12.081 4.109 -3.868 1.661 CAP M9Z 2 M9Z CAQ C3 C 0 1 Y N N -0.190 0.763 11.876 3.306 -4.953 1.955 CAQ M9Z 3 M9Z CAR C4 C 0 1 Y N N -0.327 0.238 10.607 2.200 -5.227 1.171 CAR M9Z 4 M9Z CAS C5 C 0 1 Y N N 0.268 0.852 9.521 1.898 -4.415 0.094 CAS M9Z 5 M9Z CAN C6 C 0 1 Y N N 1.024 1.988 9.714 2.698 -3.325 -0.196 CAN M9Z 6 M9Z SAL S1 S 0 1 N N N 1.790 2.813 8.336 2.313 -2.290 -1.568 SAL M9Z 7 M9Z OAT O1 O 0 1 N N N 1.078 2.345 7.067 3.527 -1.653 -1.943 OAT M9Z 8 M9Z OAU O2 O 0 1 N N N 1.666 4.316 8.542 1.542 -3.080 -2.463 OAU M9Z 9 M9Z NAK N1 N 0 1 N N N 3.531 2.270 8.366 1.310 -1.095 -1.015 NAK M9Z 10 M9Z CAM C7 C 0 1 N N N 4.000 1.325 7.340 -0.125 -1.150 -1.306 CAM M9Z 11 M9Z CAC C8 C 0 1 N N N 4.415 2.490 9.371 1.837 -0.021 -0.261 CAC M9Z 12 M9Z CAD C9 C 0 1 N N N 4.620 1.471 10.323 3.211 0.035 0.037 CAD M9Z 13 M9Z OAH O3 O 0 1 N N N 4.000 0.412 10.346 3.960 -0.845 -0.354 OAH M9Z 14 M9Z NAE N2 N 0 1 N N N 5.561 1.668 11.300 3.694 1.066 0.757 NAE M9Z 15 M9Z CAF C10 C 0 1 N N N 6.302 2.837 11.354 2.876 2.041 1.192 CAF M9Z 16 M9Z OAG O4 O 0 1 N N N 7.126 2.972 12.245 3.334 2.963 1.839 OAG M9Z 17 M9Z NAA N3 N 0 1 N N N 6.123 3.813 10.451 1.558 2.013 0.921 NAA M9Z 18 M9Z CAI C11 C 0 1 N N N 7.009 5.009 10.567 0.691 3.089 1.409 CAI M9Z 19 M9Z CAV C12 C 0 1 Y N N 6.714 6.011 11.506 0.720 4.238 0.433 CAV M9Z 20 M9Z CAW C13 C 0 1 Y N N 7.425 7.205 11.372 1.723 5.185 0.510 CAW M9Z 21 M9Z CAX C14 C 0 1 Y N N 7.220 8.280 12.251 1.749 6.238 -0.385 CAX M9Z 22 M9Z CAY C15 C 0 1 Y N N 6.300 8.160 13.281 0.772 6.344 -1.357 CAY M9Z 23 M9Z CAZ C16 C 0 1 Y N N 5.581 6.972 13.411 -0.231 5.396 -1.434 CAZ M9Z 24 M9Z CBA C17 C 0 1 Y N N 5.798 5.888 12.549 -0.255 4.340 -0.542 CBA M9Z 25 M9Z CAB C18 C 0 1 N N N 5.203 3.650 9.436 1.020 0.982 0.185 CAB M9Z 26 M9Z NAJ N4 N 0 1 N N N 4.971 4.575 8.507 -0.327 0.957 -0.095 NAJ M9Z 27 M9Z CBB C19 C 0 1 N N N 4.536 5.961 8.816 -1.253 0.283 0.818 CBB M9Z 28 M9Z CBC C20 C 0 1 N N N 5.409 6.964 8.030 -2.659 0.291 0.216 CBC M9Z 29 M9Z CBK C21 C 0 1 N N N 4.752 8.332 7.882 -3.627 -0.412 1.170 CBK M9Z 30 M9Z NBD N5 N 0 1 Y N N 4.911 9.165 9.092 -4.974 -0.405 0.593 NBD M9Z 31 M9Z CBH C22 C 0 1 Y N N 5.700 10.214 9.313 -5.751 -1.491 0.379 CBH M9Z 32 M9Z NBE N6 N 0 1 Y N N 4.196 8.924 10.228 -5.623 0.638 0.209 NBE M9Z 33 M9Z NBF N7 N 0 1 Y N N 4.481 9.720 11.073 -6.776 0.299 -0.249 NBF M9Z 34 M9Z CBG C23 C 0 1 Y N N 5.412 10.542 10.571 -6.902 -1.030 -0.163 CBG M9Z 35 M9Z CBI C24 C 0 1 N N N 6.025 11.698 11.377 -8.093 -1.852 -0.585 CBI M9Z 36 M9Z NBJ N8 N 0 1 N N N 5.063 12.141 12.393 -9.076 -1.884 0.506 NBJ M9Z 37 M9Z H1 H1 H 0 1 N N N 1.769 3.406 11.140 4.435 -2.207 0.355 H1 M9Z 38 M9Z H2 H2 H 0 1 N N N 0.676 2.311 13.074 4.973 -3.654 2.273 H2 M9Z 39 M9Z H3 H3 H 0 1 N N N -0.674 0.281 12.712 3.542 -5.588 2.796 H3 M9Z 40 M9Z H4 H4 H 0 1 N N N -0.905 -0.662 10.461 1.573 -6.076 1.400 H4 M9Z 41 M9Z H5 H5 H 0 1 N N N 0.141 0.445 8.529 1.032 -4.626 -0.515 H5 M9Z 42 M9Z H6 H6 H 0 1 N N N 5.065 1.105 7.503 -0.650 -1.596 -0.462 H6 M9Z 43 M9Z H7 H7 H 0 1 N N N 3.419 0.394 7.406 -0.500 -0.141 -1.476 H7 M9Z 44 M9Z H8 H8 H 0 1 N N N 3.866 1.770 6.343 -0.292 -1.754 -2.198 H8 M9Z 45 M9Z H9 H9 H 0 1 N N N 5.715 0.956 11.985 4.641 1.106 0.963 H9 M9Z 46 M9Z H10 H10 H 0 1 N N N 8.016 4.637 10.805 -0.329 2.719 1.504 H10 M9Z 47 M9Z H11 H11 H 0 1 N N N 7.021 5.493 9.579 1.047 3.430 2.381 H11 M9Z 48 M9Z H12 H12 H 0 1 N N N 8.148 7.304 10.576 2.487 5.102 1.269 H12 M9Z 49 M9Z H13 H13 H 0 1 N N N 7.777 9.197 12.125 2.533 6.979 -0.325 H13 M9Z 50 M9Z H14 H14 H 0 1 N N N 6.142 8.974 13.973 0.791 7.167 -2.055 H14 M9Z 51 M9Z H15 H15 H 0 1 N N N 4.841 6.885 14.193 -0.995 5.479 -2.193 H15 M9Z 52 M9Z H16 H16 H 0 1 N N N 5.259 4.963 12.692 -1.037 3.598 -0.605 H16 M9Z 53 M9Z H17 H17 H 0 1 N N N 4.263 4.193 7.913 -0.663 1.386 -0.898 H17 M9Z 54 M9Z H18 H18 H 0 1 N N N 4.645 6.147 9.895 -0.929 -0.747 0.970 H18 M9Z 55 M9Z H19 H19 H 0 1 N N N 3.482 6.087 8.527 -1.264 0.805 1.775 H19 M9Z 56 M9Z H20 H20 H 0 1 N N N 5.597 6.555 7.027 -2.984 1.321 0.064 H20 M9Z 57 M9Z H21 H21 H 0 1 N N N 6.365 7.089 8.560 -2.648 -0.231 -0.741 H21 M9Z 58 M9Z H22 H22 H 0 1 N N N 5.211 8.855 7.030 -3.303 -1.442 1.322 H22 M9Z 59 M9Z H23 H23 H 0 1 N N N 3.678 8.190 7.689 -3.638 0.110 2.127 H23 M9Z 60 M9Z H24 H24 H 0 1 N N N 6.401 10.683 8.638 -5.502 -2.520 0.595 H24 M9Z 61 M9Z H25 H25 H 0 1 N N N 6.948 11.355 11.868 -8.546 -1.408 -1.470 H25 M9Z 62 M9Z H26 H26 H 0 1 N N N 6.258 12.534 10.702 -7.771 -2.868 -0.812 H26 M9Z 63 M9Z H27 H27 H 0 1 N N N 5.457 12.894 12.920 -9.343 -0.950 0.780 H27 M9Z 64 M9Z H28 H28 H 0 1 N N N 4.225 12.452 11.945 -9.885 -2.429 0.248 H28 M9Z 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal M9Z OAT SAL DOUB N N 1 M9Z CAM NAK SING N N 2 M9Z CBK CBC SING N N 3 M9Z CBK NBD SING N N 4 M9Z CBC CBB SING N N 5 M9Z SAL NAK SING N N 6 M9Z SAL OAU DOUB N N 7 M9Z SAL CAN SING N N 8 M9Z NAK CAC SING N N 9 M9Z NAJ CBB SING N N 10 M9Z NAJ CAB SING N N 11 M9Z NBD CBH SING Y N 12 M9Z NBD NBE SING Y N 13 M9Z CBH CBG DOUB Y N 14 M9Z CAC CAB DOUB N N 15 M9Z CAC CAD SING N N 16 M9Z CAB NAA SING N N 17 M9Z CAS CAN DOUB Y N 18 M9Z CAS CAR SING Y N 19 M9Z CAN CAO SING Y N 20 M9Z NBE NBF DOUB Y N 21 M9Z CAD OAH DOUB N N 22 M9Z CAD NAE SING N N 23 M9Z NAA CAI SING N N 24 M9Z NAA CAF SING N N 25 M9Z CAI CAV SING N N 26 M9Z CBG NBF SING Y N 27 M9Z CBG CBI SING N N 28 M9Z CAR CAQ DOUB Y N 29 M9Z CAO CAP DOUB Y N 30 M9Z NAE CAF SING N N 31 M9Z CAF OAG DOUB N N 32 M9Z CAW CAV DOUB Y N 33 M9Z CAW CAX SING Y N 34 M9Z CBI NBJ SING N N 35 M9Z CAV CBA SING Y N 36 M9Z CAQ CAP SING Y N 37 M9Z CAX CAY DOUB Y N 38 M9Z CBA CAZ DOUB Y N 39 M9Z CAY CAZ SING Y N 40 M9Z CAO H1 SING N N 41 M9Z CAP H2 SING N N 42 M9Z CAQ H3 SING N N 43 M9Z CAR H4 SING N N 44 M9Z CAS H5 SING N N 45 M9Z CAM H6 SING N N 46 M9Z CAM H7 SING N N 47 M9Z CAM H8 SING N N 48 M9Z NAE H9 SING N N 49 M9Z CAI H10 SING N N 50 M9Z CAI H11 SING N N 51 M9Z CAW H12 SING N N 52 M9Z CAX H13 SING N N 53 M9Z CAY H14 SING N N 54 M9Z CAZ H15 SING N N 55 M9Z CBA H16 SING N N 56 M9Z NAJ H17 SING N N 57 M9Z CBB H18 SING N N 58 M9Z CBB H19 SING N N 59 M9Z CBC H20 SING N N 60 M9Z CBC H21 SING N N 61 M9Z CBK H22 SING N N 62 M9Z CBK H23 SING N N 63 M9Z CBH H24 SING N N 64 M9Z CBI H25 SING N N 65 M9Z CBI H26 SING N N 66 M9Z NBJ H27 SING N N 67 M9Z NBJ H28 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor M9Z InChI InChI 1.03 "InChI=1S/C24H28N8O4S/c1-30(37(35,36)20-11-6-3-7-12-20)21-22(26-13-8-14-31-17-19(15-25)28-29-31)32(24(34)27-23(21)33)16-18-9-4-2-5-10-18/h2-7,9-12,17,26H,8,13-16,25H2,1H3,(H,27,33,34)" M9Z InChIKey InChI 1.03 NGZWWWWROKKCNA-UHFFFAOYSA-N M9Z SMILES_CANONICAL CACTVS 3.385 "CN(C1=C(NCCCn2cc(CN)nn2)N(Cc3ccccc3)C(=O)NC1=O)[S](=O)(=O)c4ccccc4" M9Z SMILES CACTVS 3.385 "CN(C1=C(NCCCn2cc(CN)nn2)N(Cc3ccccc3)C(=O)NC1=O)[S](=O)(=O)c4ccccc4" M9Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)NCCCn3cc(nn3)CN)S(=O)(=O)c4ccccc4" M9Z SMILES "OpenEye OEToolkits" 2.0.7 "CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)NCCCn3cc(nn3)CN)S(=O)(=O)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id M9Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[6-[3-[4-(aminomethyl)-1,2,3-triazol-1-yl]propylamino]-2,4-bis(oxidanylidene)-1-(phenylmethyl)pyrimidin-5-yl]-~{N}-methyl-benzenesulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site M9Z "Create component" 2019-10-10 PDBE M9Z "Initial release" 2020-08-19 RCSB ##