data_MA3 # _chem_comp.id MA3 _chem_comp.name "methyl 4-thio-alpha-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE; methyl 4-thio-alpha-D-glucoside; methyl 4-thio-D-glucoside; methyl 4-thio-glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 210.248 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MA3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JFH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 MA3 O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE PDB ? 2 MA3 "methyl 4-thio-alpha-D-glucoside" PDB ? 3 MA3 "methyl 4-thio-D-glucoside" PDB ? 4 MA3 "methyl 4-thio-glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MA3 C1 C1 C 0 1 N N S -2.560 43.097 18.885 1.503 0.411 0.796 C1 MA3 1 MA3 C2 C2 C 0 1 N N R -3.019 41.678 18.508 0.336 0.644 1.759 C2 MA3 2 MA3 C3 C3 C 0 1 N N R -4.538 41.607 18.343 -0.898 -0.094 1.236 C3 MA3 3 MA3 C4 C4 C 0 1 N N S -5.245 42.152 19.586 -1.152 0.340 -0.211 C4 MA3 4 MA3 C5 C5 C 0 1 N N R -4.704 43.557 19.875 0.126 0.130 -1.026 C5 MA3 5 MA3 C6 C6 C 0 1 N N N -5.277 44.209 21.120 -0.127 0.531 -2.480 C6 MA3 6 MA3 C7 C7 C 0 1 N N N -2.554 45.392 18.099 2.855 -1.143 -0.213 C7 MA3 7 MA3 O1 O1 O 0 1 N N N -2.846 43.998 17.815 1.760 -0.990 0.691 O1 MA3 8 MA3 O2 O2 O 0 1 N N N -2.392 41.253 17.306 0.678 0.146 3.054 O2 MA3 9 MA3 O3 O3 O 0 1 N N N -4.934 40.260 18.123 -2.033 0.233 2.040 O3 MA3 10 MA3 S4 S4 S 0 1 N N N -7.059 42.161 19.318 -2.493 -0.654 -0.920 S4 MA3 11 MA3 O5 O5 O 0 1 N N N -3.275 43.509 20.041 1.177 0.931 -0.490 O5 MA3 12 MA3 O6 O6 O 0 1 N N N -4.918 43.496 22.290 1.062 0.329 -3.245 O6 MA3 13 MA3 H1 H1 H 0 1 N N N -1.462 43.098 19.082 2.392 0.914 1.176 H1 MA3 14 MA3 H2 H2 H 0 1 N N N -2.721 40.999 19.341 0.124 1.711 1.823 H2 MA3 15 MA3 H3 H3 H 0 1 N N N -4.827 42.231 17.466 -0.724 -1.169 1.270 H3 MA3 16 MA3 H4 H4 H 0 1 N N N -5.044 41.502 20.470 -1.429 1.394 -0.232 H4 MA3 17 MA3 H5 H5 H 0 1 N N N -5.012 44.169 18.995 0.413 -0.920 -0.984 H5 MA3 18 MA3 H61 H61 H 0 1 N N N -4.984 45.282 21.190 -0.931 -0.080 -2.891 H61 MA3 19 MA3 H62 H62 H 0 1 N N N -6.382 44.336 21.042 -0.413 1.582 -2.523 H62 MA3 20 MA3 H71 H71 H 0 1 N N N -2.777 46.095 17.263 3.088 -2.202 -0.325 H71 MA3 21 MA3 H72 H72 H 0 1 N N N -3.079 45.715 19.027 2.586 -0.725 -1.183 H72 MA3 22 MA3 H73 H73 H 0 1 N N N -1.494 45.505 18.427 3.726 -0.619 0.179 H73 MA3 23 MA3 HO2 HO2 H 0 1 N Y N -2.675 40.376 17.073 1.459 0.636 3.345 HO2 MA3 24 MA3 HO3 HO3 H 0 1 N Y N -5.877 40.215 18.020 -1.831 -0.057 2.940 HO3 MA3 25 MA3 HS4 HS4 H 0 1 N N N -7.497 42.499 20.089 -3.492 -0.331 -0.079 HS4 MA3 26 MA3 HO6 HO6 H 0 1 N Y N -5.276 43.904 23.069 0.859 0.592 -4.153 HO6 MA3 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MA3 C1 C2 SING N N 1 MA3 C1 O1 SING N N 2 MA3 C1 O5 SING N N 3 MA3 C1 H1 SING N N 4 MA3 C2 C3 SING N N 5 MA3 C2 O2 SING N N 6 MA3 C2 H2 SING N N 7 MA3 C3 C4 SING N N 8 MA3 C3 O3 SING N N 9 MA3 C3 H3 SING N N 10 MA3 C4 C5 SING N N 11 MA3 C4 S4 SING N N 12 MA3 C4 H4 SING N N 13 MA3 C5 C6 SING N N 14 MA3 C5 O5 SING N N 15 MA3 C5 H5 SING N N 16 MA3 C6 O6 SING N N 17 MA3 C6 H61 SING N N 18 MA3 C6 H62 SING N N 19 MA3 C7 O1 SING N N 20 MA3 C7 H71 SING N N 21 MA3 C7 H72 SING N N 22 MA3 C7 H73 SING N N 23 MA3 O2 HO2 SING N N 24 MA3 O3 HO3 SING N N 25 MA3 S4 HS4 SING N N 26 MA3 O6 HO6 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MA3 SMILES ACDLabs 10.04 "OC1C(O)C(S)C(OC1OC)CO" MA3 SMILES_CANONICAL CACTVS 3.341 "CO[C@H]1O[C@H](CO)[C@@H](S)[C@H](O)[C@H]1O" MA3 SMILES CACTVS 3.341 "CO[CH]1O[CH](CO)[CH](S)[CH](O)[CH]1O" MA3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)S)O)O" MA3 SMILES "OpenEye OEToolkits" 1.5.0 "COC1C(C(C(C(O1)CO)S)O)O" MA3 InChI InChI 1.03 "InChI=1S/C7H14O5S/c1-11-7-5(10)4(9)6(13)3(2-8)12-7/h3-10,13H,2H2,1H3/t3-,4-,5-,6-,7+/m1/s1" MA3 InChIKey InChI 1.03 PFROTWRHYMLGHR-GKHCUFPYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MA3 "SYSTEMATIC NAME" ACDLabs 10.04 "methyl 4-thio-alpha-D-glucopyranoside" MA3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-2-methoxy-5-sulfanyl-oxane-3,4-diol" MA3 "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 O1-methyl-4-deoxy-4-thio-a-D-glucose # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support MA3 "CARBOHYDRATE ISOMER" D PDB ? MA3 "CARBOHYDRATE RING" pyranose PDB ? MA3 "CARBOHYDRATE ANOMER" alpha PDB ? MA3 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MA3 "Create component" 1999-07-08 EBI MA3 "Modify descriptor" 2011-06-04 RCSB MA3 "Other modification" 2020-07-03 RCSB MA3 "Modify name" 2020-07-17 RCSB MA3 "Modify synonyms" 2020-07-17 RCSB MA3 "Modify linking type" 2020-07-17 RCSB MA3 "Modify leaving atom flag" 2020-07-17 RCSB ##