data_MA6 # _chem_comp.id MA6 _chem_comp.name "6N-DIMETHYLADENOSINE-5'-MONOPHOSHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H18 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 375.274 _chem_comp.one_letter_code A _chem_comp.three_letter_code MA6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1WTS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MA6 C2 C2 C 0 1 Y N N 15.501 11.355 2.515 -1.274 -1.222 4.559 C2 MA6 1 MA6 C4 C4 C 0 1 Y N N 16.583 12.568 1.043 -0.411 -0.331 2.624 C4 MA6 2 MA6 C5 C5 C 0 1 Y N N 17.496 13.017 1.984 0.610 0.277 3.372 C5 MA6 3 MA6 P P P 0 1 N N N 19.859 14.290 -4.633 1.291 -0.130 -5.098 P MA6 4 MA6 OP1 O1P O 0 1 N N N 20.887 15.031 -5.411 2.452 -1.135 -5.583 OP1 MA6 5 MA6 OP2 O2P O 0 1 N N N 19.177 13.155 -5.299 0.188 0.017 -6.262 OP2 MA6 6 MA6 OP3 O3P O 0 1 N Y N 20.608 13.756 -3.299 1.878 1.196 -4.803 OP3 MA6 7 MA6 "O5'" O5* O 0 1 N N N 18.777 15.347 -4.042 0.594 -0.716 -3.770 "O5'" MA6 8 MA6 "C5'" C5* C 0 1 N N N 17.365 15.156 -3.766 -0.420 0.215 -3.391 "C5'" MA6 9 MA6 "C4'" C4* C 0 1 N N R 16.765 13.752 -3.593 -1.125 -0.284 -2.129 "C4'" MA6 10 MA6 "O4'" O4* O 0 1 N N N 17.332 13.026 -2.462 -0.187 -0.385 -1.035 "O4'" MA6 11 MA6 "C1'" C1* C 0 1 N N R 16.334 12.900 -1.446 -0.994 -0.370 0.161 "C1'" MA6 12 MA6 N9 N9 N 0 1 Y N N 16.959 13.139 -0.147 -0.185 0.021 1.317 N9 MA6 13 MA6 N3 N3 N 0 1 Y N N 15.551 11.731 1.243 -1.325 -1.063 3.254 N3 MA6 14 MA6 N1 N1 N 0 1 Y N N 16.309 11.695 3.523 -0.330 -0.675 5.303 N1 MA6 15 MA6 C6 C6 C 0 1 Y N N 17.349 12.535 3.307 0.626 0.072 4.762 C6 MA6 16 MA6 N6 N6 N 0 1 N N N 18.143 12.828 4.361 1.611 0.641 5.550 N6 MA6 17 MA6 C9 C9 C 0 1 N N N 19.299 13.722 4.220 1.329 0.238 6.934 C9 MA6 18 MA6 C10 C10 C 0 1 N N N 17.966 12.248 5.704 2.877 -0.000 5.172 C10 MA6 19 MA6 N7 N7 N 0 1 Y N N 18.411 13.885 1.389 1.397 0.949 2.499 N7 MA6 20 MA6 C8 C8 C 0 1 Y N N 18.040 13.932 0.129 0.930 0.803 1.293 C8 MA6 21 MA6 "C2'" C2* C 0 1 N N R 15.212 13.860 -1.831 -2.090 0.683 -0.110 "C2'" MA6 22 MA6 "O2'" O2* O 0 1 N N N 14.001 13.534 -1.152 -3.340 0.271 0.444 "O2'" MA6 23 MA6 "C3'" C3* C 0 1 N N S 15.247 13.604 -3.353 -2.176 0.743 -1.654 "C3'" MA6 24 MA6 "O3'" O3* O 0 1 N N N 14.907 12.285 -3.860 -3.481 0.367 -2.098 "O3'" MA6 25 MA6 H2 H2 H 0 1 N N N 14.694 10.679 2.791 -2.032 -1.822 5.040 H2 MA6 26 MA6 HOP1 1HOP H 0 0 N N N 21.324 15.758 -4.984 2.842 -0.747 -6.379 HOP1 MA6 27 MA6 HOP2 2HOP H 0 0 N N N 18.520 12.681 -4.802 -0.168 -0.866 -6.423 HOP2 MA6 28 MA6 "H5'" 1H5* H 0 1 N N N 16.850 15.671 -4.579 -1.146 0.309 -4.199 "H5'" MA6 29 MA6 "H5''" 2H5* H 0 0 N N N 17.126 15.727 -2.876 0.032 1.186 -3.194 "H5''" MA6 30 MA6 "H4'" H4* H 0 1 N N N 16.932 13.251 -4.543 -1.596 -1.250 -2.315 "H4'" MA6 31 MA6 "H1'" H1* H 0 1 N N N 15.983 11.867 -1.475 -1.443 -1.350 0.327 "H1'" MA6 32 MA6 H91 1H9 H 0 1 N N N 19.717 13.636 3.229 2.083 0.664 7.597 H91 MA6 33 MA6 H92 2H9 H 0 1 N N N 20.080 13.477 4.921 0.343 0.600 7.225 H92 MA6 34 MA6 H93 3H9 H 0 1 N N N 18.994 14.746 4.383 1.354 -0.848 7.008 H93 MA6 35 MA6 H101 1H10 H 0 0 N N N 18.640 12.666 6.436 3.130 0.270 4.147 H101 MA6 36 MA6 H102 2H10 H 0 0 N N N 18.144 11.184 5.647 3.668 0.335 5.843 H102 MA6 37 MA6 H103 3H10 H 0 0 N N N 16.956 12.411 6.054 2.772 -1.082 5.247 H103 MA6 38 MA6 H8 H8 H 0 1 N N N 18.502 14.532 -0.645 1.363 1.237 0.404 H8 MA6 39 MA6 "H2'" H2* H 0 1 N N N 15.547 14.883 -1.630 -1.794 1.652 0.292 "H2'" MA6 40 MA6 "HO2'" *HO2 H 0 0 N N N 13.340 13.325 -1.822 -3.992 0.937 0.189 "HO2'" MA6 41 MA6 "H3'" H3* H 0 1 N N N 14.676 14.317 -3.951 -1.924 1.740 -2.013 "H3'" MA6 42 MA6 "HO3'" *HO3 H 0 0 N Y N 13.973 12.193 -3.712 -4.092 1.042 -1.773 "HO3'" MA6 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MA6 C2 N3 DOUB Y N 1 MA6 C2 N1 SING Y N 2 MA6 C2 H2 SING N N 3 MA6 C4 C5 DOUB Y N 4 MA6 C4 N9 SING Y N 5 MA6 C4 N3 SING Y N 6 MA6 C5 C6 SING Y N 7 MA6 C5 N7 SING Y N 8 MA6 P OP1 SING N N 9 MA6 P OP2 SING N N 10 MA6 P OP3 DOUB N N 11 MA6 P "O5'" SING N N 12 MA6 OP1 HOP1 SING N N 13 MA6 OP2 HOP2 SING N N 14 MA6 "O5'" "C5'" SING N N 15 MA6 "C5'" "C4'" SING N N 16 MA6 "C5'" "H5'" SING N N 17 MA6 "C5'" "H5''" SING N N 18 MA6 "C4'" "O4'" SING N N 19 MA6 "C4'" "C3'" SING N N 20 MA6 "C4'" "H4'" SING N N 21 MA6 "O4'" "C1'" SING N N 22 MA6 "C1'" N9 SING N N 23 MA6 "C1'" "C2'" SING N N 24 MA6 "C1'" "H1'" SING N N 25 MA6 N9 C8 SING Y N 26 MA6 N1 C6 DOUB Y N 27 MA6 C6 N6 SING N N 28 MA6 N6 C9 SING N N 29 MA6 N6 C10 SING N N 30 MA6 C9 H91 SING N N 31 MA6 C9 H92 SING N N 32 MA6 C9 H93 SING N N 33 MA6 C10 H101 SING N N 34 MA6 C10 H102 SING N N 35 MA6 C10 H103 SING N N 36 MA6 N7 C8 DOUB Y N 37 MA6 C8 H8 SING N N 38 MA6 "C2'" "O2'" SING N N 39 MA6 "C2'" "C3'" SING N N 40 MA6 "C2'" "H2'" SING N N 41 MA6 "O2'" "HO2'" SING N N 42 MA6 "C3'" "O3'" SING N N 43 MA6 "C3'" "H3'" SING N N 44 MA6 "O3'" "HO3'" SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MA6 SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1c2ncnc1N(C)C)C(O)C3O" MA6 SMILES_CANONICAL CACTVS 3.341 "CN(C)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" MA6 SMILES CACTVS 3.341 "CN(C)c1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" MA6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" MA6 SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O" MA6 InChI InChI 1.03 "InChI=1S/C12H18N5O7P/c1-16(2)10-7-11(14-4-13-10)17(5-15-7)12-9(19)8(18)6(24-12)3-23-25(20,21)22/h4-6,8-9,12,18-19H,3H2,1-2H3,(H2,20,21,22)/t6-,8-,9-,12-/m1/s1" MA6 InChIKey InChI 1.03 OWRDTHWSVNWFAZ-WOUKDFQISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MA6 "SYSTEMATIC NAME" ACDLabs 10.04 ;N,N-dimethyladenosine 5'-(dihydrogen phosphate) ; MA6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-dimethylaminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MA6 "Create component" 1999-07-08 RCSB MA6 "Modify descriptor" 2011-06-04 RCSB #