data_MAP
#
_chem_comp.id MAP
_chem_comp.name "MAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 Mg N6 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2023-09-23
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 529.493
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MAP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1QPG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MAP PG PG P 0 1 N N N 30.659 15.049 22.868 -6.670 1.392 -1.043 PG MAP 1
MAP O1G O1G O 0 1 N N N 29.468 15.145 23.764 -7.404 0.132 -1.301 O1G MAP 2
MAP O2G O2G O 0 1 N N N 30.356 15.539 21.485 -7.051 2.475 -2.172 O2G MAP 3
MAP O3G O3G O 0 1 N N N 31.154 13.639 22.837 -7.077 1.962 0.407 O3G MAP 4
MAP PB PB P 0 1 N N N 32.034 17.853 23.803 -4.574 -0.035 0.081 PB MAP 5
MAP O1B O1B O 0 1 N N N 30.771 18.327 23.149 -5.291 -1.306 -0.167 O1B MAP 6
MAP O2B O2B O 0 1 N N N 33.184 18.528 23.135 -4.962 0.522 1.541 O2B MAP 7
MAP N3B N3B N 0 1 N N N 32.105 16.108 23.444 -5.015 1.095 -1.086 N3B MAP 8
MAP PA PA P 0 1 N N S 30.996 17.593 26.454 -1.966 -1.229 0.828 PA MAP 9
MAP O1A O1A O 0 1 N N N 31.266 16.456 27.352 -2.549 -2.580 0.977 O1A MAP 10
MAP O2A O2A O 0 1 N N N 29.538 17.681 26.185 -1.705 -0.593 2.284 O2A MAP 11
MAP O3A O3A O 0 1 N N N 31.992 17.955 25.328 -2.986 -0.291 0.009 O3A MAP 12
MAP "O5'" "O5'" O 0 1 N N N 31.117 18.821 27.479 -0.572 -1.331 0.030 "O5'" MAP 13
MAP "C5'" "C5'" C 0 1 N N N 31.472 20.186 27.263 0.504 -2.174 0.447 "C5'" MAP 14
MAP "C4'" "C4'" C 0 1 N N R 30.762 20.916 28.404 1.672 -2.031 -0.531 "C4'" MAP 15
MAP "O4'" "O4'" O 0 1 N N N 31.399 20.459 29.603 2.220 -0.705 -0.447 "O4'" MAP 16
MAP "C3'" "C3'" C 0 1 N N S 30.914 22.424 28.454 2.796 -3.016 -0.152 "C3'" MAP 17
MAP "O3'" "O3'" O 0 1 N N N 30.048 23.083 29.445 3.051 -3.921 -1.227 "O3'" MAP 18
MAP "C2'" "C2'" C 0 1 N N R 32.337 22.453 29.010 4.026 -2.109 0.097 "C2'" MAP 19
MAP "O2'" "O2'" O 0 1 N N N 32.637 23.828 29.312 5.210 -2.696 -0.450 "O2'" MAP 20
MAP "C1'" "C1'" C 0 1 N N R 31.924 21.651 30.226 3.641 -0.821 -0.674 "C1'" MAP 21
MAP N9 N9 N 0 1 Y N N 33.079 21.407 31.151 4.348 0.339 -0.124 N9 MAP 22
MAP C8 C8 C 0 1 Y N N 34.442 21.482 30.937 3.904 1.155 0.874 C8 MAP 23
MAP N7 N7 N 0 1 Y N N 35.145 21.515 32.031 4.783 2.085 1.112 N7 MAP 24
MAP C5 C5 C 0 1 Y N N 34.184 21.448 33.030 5.843 1.925 0.284 C5 MAP 25
MAP C6 C6 C 0 1 Y N N 34.282 21.485 34.428 7.057 2.607 0.089 C6 MAP 26
MAP N6 N6 N 0 1 N N N 35.445 21.660 35.055 7.374 3.719 0.850 N6 MAP 27
MAP N1 N1 N 0 1 Y N N 33.145 21.366 35.133 7.892 2.159 -0.842 N1 MAP 28
MAP C2 C2 C 0 1 Y N N 31.985 21.280 34.469 7.598 1.099 -1.573 C2 MAP 29
MAP N3 N3 N 0 1 Y N N 31.763 21.268 33.164 6.474 0.430 -1.426 N3 MAP 30
MAP C4 C4 C 0 1 Y N N 32.932 21.351 32.504 5.580 0.800 -0.515 C4 MAP 31
MAP MG MG MG 0 0 N N N 28.734 17.403 24.165 -0.978 1.097 2.244 MG MAP 32
MAP HOG2 HOG2 H 0 0 N N N 29.450 15.822 21.440 -7.992 2.695 -2.205 HOG2 MAP 33
MAP HOG3 HOG3 H 0 0 N N N 30.607 13.098 23.394 -6.633 2.788 0.643 HOG3 MAP 34
MAP HOB2 HOB2 H 0 0 N N N 32.861 19.102 22.451 -4.528 1.355 1.772 HOB2 MAP 35
MAP HNB1 HNB1 H 0 0 N N N 32.428 15.678 24.287 -4.724 0.797 -2.005 HNB1 MAP 36
MAP "H5'1" "H5'1" H 0 0 N N N 32.562 20.325 27.324 0.828 -1.883 1.446 "H5'1" MAP 37
MAP "H5'2" "H5'2" H 0 0 N N N 31.111 20.537 26.285 0.168 -3.211 0.462 "H5'2" MAP 38
MAP "H4'" "H4'" H 0 1 N N N 29.694 20.651 28.402 1.331 -2.228 -1.547 "H4'" MAP 39
MAP "H3'" "H3'" H 0 1 N N N 30.851 22.882 27.456 2.534 -3.563 0.753 "H3'" MAP 40
MAP "HO3'" "HO3'" H 0 0 N N N 30.196 24.021 29.421 3.750 -4.564 -1.043 "HO3'" MAP 41
MAP "H2'" "H2'" H 0 1 N N N 33.071 21.943 28.369 4.151 -1.905 1.160 "H2'" MAP 42
MAP "HO2'" "HO2'" H 0 0 N N N 33.518 23.891 29.662 5.441 -3.550 -0.061 "HO2'" MAP 43
MAP "H1'" "H1'" H 0 1 N N N 31.127 22.186 30.763 3.853 -0.931 -1.737 "H1'" MAP 44
MAP H8 H8 H 0 1 N N N 34.883 21.511 29.952 2.962 1.046 1.391 H8 MAP 45
MAP HN61 HN61 H 0 0 N N N 35.292 21.679 36.043 6.756 4.036 1.527 HN61 MAP 46
MAP HN62 HN62 H 0 0 N N N 36.063 20.907 34.828 8.215 4.181 0.706 HN62 MAP 47
MAP H2 H2 H 0 1 N N N 31.103 21.210 35.088 8.305 0.769 -2.319 H2 MAP 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MAP PG O1G DOUB N N 1
MAP PG O2G SING N N 2
MAP PG O3G SING N N 3
MAP PG N3B SING N N 4
MAP O2G HOG2 SING N N 5
MAP O3G HOG3 SING N N 6
MAP PB O1B DOUB N N 7
MAP PB O2B SING N N 8
MAP PB N3B SING N N 9
MAP PB O3A SING N N 10
MAP O2B HOB2 SING N N 11
MAP N3B HNB1 SING N N 12
MAP PA O1A DOUB N N 13
MAP PA O2A SING N N 14
MAP PA O3A SING N N 15
MAP PA "O5'" SING N N 16
MAP O2A MG SING N N 17
MAP "O5'" "C5'" SING N N 18
MAP "C5'" "C4'" SING N N 19
MAP "C5'" "H5'1" SING N N 20
MAP "C5'" "H5'2" SING N N 21
MAP "C4'" "O4'" SING N N 22
MAP "C4'" "C3'" SING N N 23
MAP "C4'" "H4'" SING N N 24
MAP "O4'" "C1'" SING N N 25
MAP "C3'" "O3'" SING N N 26
MAP "C3'" "C2'" SING N N 27
MAP "C3'" "H3'" SING N N 28
MAP "O3'" "HO3'" SING N N 29
MAP "C2'" "O2'" SING N N 30
MAP "C2'" "C1'" SING N N 31
MAP "C2'" "H2'" SING N N 32
MAP "O2'" "HO2'" SING N N 33
MAP "C1'" N9 SING N N 34
MAP "C1'" "H1'" SING N N 35
MAP N9 C8 SING Y N 36
MAP N9 C4 SING Y N 37
MAP C8 N7 DOUB Y N 38
MAP C8 H8 SING N N 39
MAP N7 C5 SING Y N 40
MAP C5 C6 SING Y N 41
MAP C5 C4 DOUB Y N 42
MAP C6 N6 SING N N 43
MAP C6 N1 DOUB Y N 44
MAP N6 HN61 SING N N 45
MAP N6 HN62 SING N N 46
MAP N1 C2 SING Y N 47
MAP C2 N3 DOUB Y N 48
MAP C2 H2 SING N N 49
MAP N3 C4 SING Y N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MAP InChI InChI 1.06 "InChI=1S/C10H17N6O12P3.Mg.H/c11-8-5-9(13-2-12-8)16(3-14-5)10-7(18)6(17)4(27-10)1-26-31(24,25)28-30(22,23)15-29(19,20)21;;/h2-4,6-7,10,17-18H,1H2,(H,24,25)(H2,11,12,13)(H4,15,19,20,21,22,23);;/q;+1;/p-1/t4-,6-,7-,10-;;/m1../s1"
MAP InChIKey InChI 1.06 QTQJEIANUKJRTB-IDIVVRGQSA-M
MAP SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](=O)(O[Mg])O[P](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O"
MAP SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](=O)(O[Mg])O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O"
MAP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O[Mg])O[P@](=O)(NP(=O)(O)O)O)O)O)N"
MAP SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O[Mg])OP(=O)(NP(=O)(O)O)O)O)O)N"
#
_pdbx_chem_comp_identifier.comp_id MAP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[oxidanyl-(phosphonoamino)phosphoryl]oxy-phosphoryl]oxymagnesium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MAP "Create component" 1999-07-08 RCSB
MAP "Modify descriptor" 2023-09-23 RCSB
#