data_MBM
#
_chem_comp.id MBM
_chem_comp.name "N-{N'-(2-methyl-1-benzofuran-5-yl)-N-[(3S)-2-oxo-1-(2-oxo-2-pyrrolidin-1-ylethyl)azepan-3-yl]carbamimidoyl}pyridine-3-carboxamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H32 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-10-22
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 516.591
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MBM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3K9X
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MBM C C C 0 1 Y N N -3.489 8.534 24.872 -7.609 -0.535 0.671 C MBM 1
MBM N N N 0 1 N N N 3.078 6.013 25.582 -0.671 -2.581 1.179 N MBM 2
MBM O O O 0 1 N N N 0.818 6.335 24.042 -2.976 -0.235 -1.020 O MBM 3
MBM C1 C1 C 0 1 Y N N -2.922 7.980 23.723 -7.095 0.155 -0.412 C1 MBM 4
MBM N1 N1 N 0 1 Y N N -2.870 8.535 26.081 -6.829 -1.264 1.447 N1 MBM 5
MBM O1 O1 O 0 1 Y N N 8.307 4.778 26.649 4.249 -4.293 -0.526 O1 MBM 6
MBM C2 C2 C 0 1 Y N N -1.640 7.441 23.827 -5.740 0.079 -0.682 C2 MBM 7
MBM N2 N2 N 0 1 N N N 1.184 7.442 26.040 -2.724 -1.574 0.734 N2 MBM 8
MBM O2 O2 O 0 1 N N N 3.992 12.678 28.346 1.900 3.297 -1.215 O2 MBM 9
MBM C3 C3 C 0 1 N N N 2.367 6.889 26.366 -1.381 -1.738 0.469 C3 MBM 10
MBM N3 N3 N 0 1 N N N 2.951 7.492 27.481 -0.787 -1.016 -0.536 N3 MBM 11
MBM O3 O3 O 0 1 N N N 4.511 8.920 28.734 1.635 0.765 1.110 O3 MBM 12
MBM C4 C4 C 0 1 N N N 0.417 6.975 25.012 -3.485 -0.820 -0.083 C4 MBM 13
MBM N4 N4 N 0 1 N N N 5.405 13.220 29.982 1.701 5.005 0.187 N4 MBM 14
MBM C5 C5 C 0 1 Y N N -1.615 8.006 26.160 -5.535 -1.368 1.231 C5 MBM 15
MBM N5 N5 N 0 1 N N N 2.960 10.504 29.418 0.101 1.699 -0.171 N5 MBM 16
MBM C6 C6 C 0 1 Y N N -0.968 7.474 25.049 -4.938 -0.702 0.159 C6 MBM 17
MBM C7 C7 C 0 1 Y N N 8.851 4.885 25.375 5.044 -3.801 0.440 C7 MBM 18
MBM C8 C8 C 0 1 Y N N 7.895 5.209 24.434 4.313 -3.141 1.348 C8 MBM 19
MBM C9 C9 C 0 1 N N N 10.308 4.697 25.264 6.541 -3.967 0.493 C9 MBM 20
MBM C10 C10 C 0 1 Y N N 4.389 5.651 25.904 0.530 -3.038 0.700 C10 MBM 21
MBM C11 C11 C 0 1 Y N N 5.330 5.696 24.832 1.704 -2.765 1.394 C11 MBM 22
MBM C12 C12 C 0 1 Y N N 6.638 5.373 25.175 2.918 -3.234 0.898 C12 MBM 23
MBM C13 C13 C 0 1 Y N N 4.724 5.375 27.248 0.576 -3.780 -0.486 C13 MBM 24
MBM C14 C14 C 0 1 Y N N 6.059 5.065 27.592 1.775 -4.242 -0.976 C14 MBM 25
MBM C15 C15 C 0 1 Y N N 6.959 5.069 26.543 2.957 -3.977 -0.294 C15 MBM 26
MBM C16 C16 C 0 1 N N N 5.844 14.419 29.267 2.717 5.872 -0.427 C16 MBM 27
MBM C17 C17 C 0 1 N N N 4.008 11.181 30.232 0.293 2.994 0.487 C17 MBM 28
MBM C18 C18 C 0 1 N N N 4.394 12.446 29.473 1.355 3.775 -0.242 C18 MBM 29
MBM C19 C19 C 0 1 N N N 6.193 12.931 31.204 1.128 5.700 1.354 C19 MBM 30
MBM C20 C20 C 0 1 N N N 7.086 14.879 30.023 2.789 7.162 0.417 C20 MBM 31
MBM C21 C21 C 0 1 N N N 7.070 14.205 31.369 2.220 6.709 1.790 C21 MBM 32
MBM C22 C22 C 0 1 N N N 1.245 7.925 29.207 1.222 -0.610 -1.876 C22 MBM 33
MBM C23 C23 C 0 1 N N N 3.333 9.329 28.798 0.825 0.647 0.215 C23 MBM 34
MBM C24 C24 C 0 1 N N S 2.200 8.568 28.172 0.640 -0.695 -0.463 C24 MBM 35
MBM C25 C25 C 0 1 N N N 1.550 10.946 29.564 -0.893 1.565 -1.248 C25 MBM 36
MBM C26 C26 C 0 1 N N N 0.110 8.847 29.717 0.194 -0.037 -2.845 C26 MBM 37
MBM C27 C27 C 0 1 N N N 0.699 10.038 30.498 -0.155 1.416 -2.579 C27 MBM 38
MBM H H H 0 1 N N N -4.468 8.984 24.796 -8.665 -0.473 0.887 H MBM 39
MBM H1 H1 H 0 1 N N N -3.458 7.969 22.785 -7.744 0.748 -1.039 H1 MBM 40
MBM H2 H2 H 0 1 N N N -1.168 6.998 22.962 -5.312 0.607 -1.521 H2 MBM 41
MBM HN2 HN2 H 0 1 N N N 0.855 8.223 26.570 -3.122 -2.003 1.508 HN2 MBM 42
MBM HN3 HN3 H 0 1 N N N 3.853 7.206 27.806 -1.312 -0.720 -1.296 HN3 MBM 43
MBM H5 H5 H 0 1 N N N -1.108 8.000 27.114 -4.930 -1.974 1.889 H5 MBM 44
MBM H8 H8 H 0 1 N N N 8.041 5.319 23.370 4.676 -2.641 2.234 H8 MBM 45
MBM H9 H9 H 0 1 N N N 10.729 4.495 26.260 6.873 -4.545 -0.370 H9 MBM 46
MBM H9A H9A H 0 1 N N N 10.518 3.847 24.598 7.016 -2.986 0.478 H9A MBM 47
MBM H9B H9B H 0 1 N N N 10.765 5.609 24.851 6.816 -4.490 1.409 H9B MBM 48
MBM H11 H11 H 0 1 N N N 5.046 5.962 23.825 1.675 -2.193 2.310 H11 MBM 49
MBM H13 H13 H 0 1 N N N 3.961 5.401 28.012 -0.338 -3.990 -1.022 H13 MBM 50
MBM H14 H14 H 0 1 N N N 6.356 4.840 28.606 1.799 -4.814 -1.892 H14 MBM 51
MBM H16 H16 H 0 1 N N N 6.079 14.192 28.217 3.685 5.371 -0.421 H16 MBM 52
MBM H16A H16A H 0 0 N N N 5.064 15.194 29.275 2.429 6.114 -1.450 H16A MBM 53
MBM H17 H17 H 0 1 N N N 3.618 11.434 31.229 -0.644 3.551 0.470 H17 MBM 54
MBM H17A H17A H 0 0 N N N 4.882 10.525 30.357 0.603 2.835 1.520 H17A MBM 55
MBM H19 H19 H 0 1 N N N 5.543 12.770 32.077 0.217 6.227 1.071 H19 MBM 56
MBM H19A H19A H 0 0 N N N 6.809 12.027 31.085 0.925 4.991 2.156 H19A MBM 57
MBM H20 H20 H 0 1 N N N 7.993 14.597 29.469 3.821 7.497 0.523 H20 MBM 58
MBM H20A H20A H 0 0 N N N 7.072 15.972 30.146 2.171 7.946 -0.023 H20A MBM 59
MBM H21 H21 H 0 1 N N N 6.643 14.873 32.131 1.783 7.550 2.327 H21 MBM 60
MBM H21A H21A H 0 0 N N N 8.090 13.935 31.679 2.986 6.219 2.391 H21A MBM 61
MBM H22 H22 H 0 1 N N N 0.776 7.052 28.730 2.103 0.032 -1.863 H22 MBM 62
MBM H22A H22A H 0 0 N N N 1.849 7.627 30.077 1.510 -1.608 -2.206 H22A MBM 63
MBM H24 H24 H 0 1 N N N 1.553 9.205 27.550 1.161 -1.467 0.105 H24 MBM 64
MBM H25 H25 H 0 1 N N N 1.554 11.961 29.987 -1.508 0.683 -1.070 H25 MBM 65
MBM H25A H25A H 0 0 N N N 1.086 10.939 28.567 -1.523 2.454 -1.276 H25A MBM 66
MBM H26 H26 H 0 1 N N N -0.462 9.226 28.857 0.587 -0.121 -3.859 H26 MBM 67
MBM H26A H26A H 0 0 N N N -0.553 8.272 30.380 -0.717 -0.631 -2.778 H26A MBM 68
MBM H27 H27 H 0 1 N N N 1.339 9.655 31.306 -0.791 1.785 -3.385 H27 MBM 69
MBM H27A H27A H 0 0 N N N -0.125 10.631 30.922 0.762 2.006 -2.549 H27A MBM 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MBM C C1 DOUB Y N 1
MBM C N1 SING Y N 2
MBM N C3 DOUB N N 3
MBM N C10 SING N N 4
MBM O C4 DOUB N N 5
MBM C1 C2 SING Y N 6
MBM N1 C5 DOUB Y N 7
MBM O1 C7 SING Y N 8
MBM O1 C15 SING Y N 9
MBM C2 C6 DOUB Y N 10
MBM N2 C3 SING N N 11
MBM N2 C4 SING N N 12
MBM O2 C18 DOUB N N 13
MBM C3 N3 SING N N 14
MBM N3 C24 SING N N 15
MBM O3 C23 DOUB N N 16
MBM C4 C6 SING N N 17
MBM N4 C16 SING N N 18
MBM N4 C18 SING N N 19
MBM N4 C19 SING N N 20
MBM C5 C6 SING Y N 21
MBM N5 C17 SING N N 22
MBM N5 C23 SING N N 23
MBM N5 C25 SING N N 24
MBM C7 C8 DOUB Y N 25
MBM C7 C9 SING N N 26
MBM C8 C12 SING Y N 27
MBM C10 C11 DOUB Y N 28
MBM C10 C13 SING Y N 29
MBM C11 C12 SING Y N 30
MBM C12 C15 DOUB Y N 31
MBM C13 C14 DOUB Y N 32
MBM C14 C15 SING Y N 33
MBM C16 C20 SING N N 34
MBM C17 C18 SING N N 35
MBM C19 C21 SING N N 36
MBM C20 C21 SING N N 37
MBM C22 C24 SING N N 38
MBM C22 C26 SING N N 39
MBM C23 C24 SING N N 40
MBM C25 C27 SING N N 41
MBM C26 C27 SING N N 42
MBM C H SING N N 43
MBM C1 H1 SING N N 44
MBM C2 H2 SING N N 45
MBM N2 HN2 SING N N 46
MBM N3 HN3 SING N N 47
MBM C5 H5 SING N N 48
MBM C8 H8 SING N N 49
MBM C9 H9 SING N N 50
MBM C9 H9A SING N N 51
MBM C9 H9B SING N N 52
MBM C11 H11 SING N N 53
MBM C13 H13 SING N N 54
MBM C14 H14 SING N N 55
MBM C16 H16 SING N N 56
MBM C16 H16A SING N N 57
MBM C17 H17 SING N N 58
MBM C17 H17A SING N N 59
MBM C19 H19 SING N N 60
MBM C19 H19A SING N N 61
MBM C20 H20 SING N N 62
MBM C20 H20A SING N N 63
MBM C21 H21 SING N N 64
MBM C21 H21A SING N N 65
MBM C22 H22 SING N N 66
MBM C22 H22A SING N N 67
MBM C24 H24 SING N N 68
MBM C25 H25 SING N N 69
MBM C25 H25A SING N N 70
MBM C26 H26 SING N N 71
MBM C26 H26A SING N N 72
MBM C27 H27 SING N N 73
MBM C27 H27A SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MBM SMILES ACDLabs 11.02 "O=C2N(CC(=O)N1CCCC1)CCCCC2N/C(=N\c4cc3c(oc(c3)C)cc4)NC(=O)c5cccnc5"
MBM SMILES_CANONICAL CACTVS 3.352 "Cc1oc2ccc(cc2c1)N=C(N[C@H]3CCCCN(CC(=O)N4CCCC4)C3=O)NC(=O)c5cccnc5"
MBM SMILES CACTVS 3.352 "Cc1oc2ccc(cc2c1)N=C(N[CH]3CCCCN(CC(=O)N4CCCC4)C3=O)NC(=O)c5cccnc5"
MBM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1cc2cc(ccc2o1)/N=C(\N[C@H]3CCCCN(C3=O)CC(=O)N4CCCC4)/NC(=O)c5cccnc5"
MBM SMILES "OpenEye OEToolkits" 1.7.0 "Cc1cc2cc(ccc2o1)N=C(NC3CCCCN(C3=O)CC(=O)N4CCCC4)NC(=O)c5cccnc5"
MBM InChI InChI 1.03
"InChI=1S/C28H32N6O4/c1-19-15-21-16-22(9-10-24(21)38-19)30-28(32-26(36)20-7-6-11-29-17-20)31-23-8-2-3-14-34(27(23)37)18-25(35)33-12-4-5-13-33/h6-7,9-11,15-17,23H,2-5,8,12-14,18H2,1H3,(H2,30,31,32,36)/t23-/m0/s1"
MBM InChIKey InChI 1.03 GNYXHJVKEWBHAI-QHCPKHFHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MBM "SYSTEMATIC NAME" ACDLabs 11.02 "N-[N'-(2-methyl-1-benzofuran-5-yl)-N-{(3S)-2-oxo-1-[2-oxo-2-(pyrrolidin-1-yl)ethyl]azepan-3-yl}carbamimidoyl]pyridine-3-carboxamide"
MBM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[(E)-N'-(2-methyl-1-benzofuran-5-yl)-N-[(3S)-2-oxo-1-(2-oxo-2-pyrrolidin-1-yl-ethyl)azepan-3-yl]carbamimidoyl]pyridine-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MBM "Create component" 2009-10-22 RCSB
MBM "Modify aromatic_flag" 2011-06-04 RCSB
MBM "Modify descriptor" 2011-06-04 RCSB
#