data_MCF # _chem_comp.id MCF _chem_comp.name "(8R)-3-(5-S-methyl-5-thio-beta-D-ribofuranosyl)-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-10-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 314.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MCF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EWC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MCF O8 O8 O 0 1 N N N -8.572 25.347 -11.968 -4.560 -1.991 -0.768 O8 MCF 1 MCF C8 C8 C 0 1 N N R -7.238 25.203 -12.504 -4.128 -1.383 0.450 C8 MCF 2 MCF C7 C7 C 0 1 N N N -7.026 23.989 -13.416 -4.883 -0.083 0.649 C7 MCF 3 MCF N6 N6 N 0 1 N N N -7.560 22.784 -12.782 -4.741 0.791 -0.499 N6 MCF 4 MCF C5 C5 C 0 1 N N N -7.002 22.163 -11.712 -3.616 1.471 -0.803 C5 MCF 5 MCF N4 N4 N 0 1 N N N -6.195 22.639 -10.831 -2.418 1.067 -0.637 N4 MCF 6 MCF C10 C10 C 0 1 Y N N -5.716 23.921 -10.705 -1.970 -0.089 -0.096 C10 MCF 7 MCF C9 C9 C 0 1 Y N N -6.237 25.097 -11.445 -2.643 -1.160 0.388 C9 MCF 8 MCF N1 N1 N 0 1 Y N N -5.513 26.105 -10.969 -1.738 -2.055 0.832 N1 MCF 9 MCF C2 C2 C 0 1 Y N N -4.664 25.636 -10.014 -0.535 -1.599 0.637 C2 MCF 10 MCF N3 N3 N 0 1 Y N N -4.780 24.316 -9.832 -0.622 -0.377 0.055 N3 MCF 11 MCF C1S C1S C 0 1 N N R -3.949 23.620 -8.819 0.499 0.479 -0.341 C1S MCF 12 MCF C2S C2S C 0 1 N N R -4.426 22.245 -8.402 0.822 1.506 0.774 C2S MCF 13 MCF O2S O2S O 0 1 N N N -5.288 22.413 -7.272 0.011 2.675 0.641 O2S MCF 14 MCF O4S O4S O 0 1 N N N -2.576 23.509 -9.224 1.714 -0.293 -0.450 O4S MCF 15 MCF C4S C4S C 0 1 N N S -2.130 22.190 -8.942 2.810 0.630 -0.331 C4S MCF 16 MCF C3S C3S C 0 1 N N S -3.132 21.582 -7.970 2.310 1.831 0.495 C3S MCF 17 MCF O3S O3S O 0 1 N N N -2.908 21.995 -6.606 2.425 3.039 -0.259 O3S MCF 18 MCF C5S C5S C 0 1 N N N -1.743 21.356 -10.155 3.982 -0.043 0.386 C5S MCF 19 MCF S5S S5S S 0 1 N N N -0.436 20.286 -9.622 4.643 -1.375 -0.653 S5S MCF 20 MCF C6S C6S C 0 1 N N N -1.044 18.665 -9.352 5.999 -2.040 0.351 C6S MCF 21 MCF HO8 HO8 H 0 1 N N N -8.531 25.379 -11.019 -5.510 -2.167 -0.805 HO8 MCF 22 MCF H8 H8 H 0 1 N N N -7.119 26.118 -13.103 -4.352 -2.053 1.281 H8 MCF 23 MCF H7 H7 H 0 1 N N N -7.546 24.157 -14.371 -5.939 -0.303 0.800 H7 MCF 24 MCF H7A H7A H 0 1 N N N -5.949 23.855 -13.593 -4.495 0.424 1.533 H7A MCF 25 MCF HN6 HN6 H 0 1 N N N -8.396 22.390 -13.164 -5.505 0.893 -1.088 HN6 MCF 26 MCF H5 H5 H 0 1 N N N -7.273 21.126 -11.582 -3.743 2.455 -1.229 H5 MCF 27 MCF H2 H2 H 0 1 N N N -3.974 26.260 -9.465 0.381 -2.109 0.896 H2 MCF 28 MCF H1S H1S H 0 1 N N N -4.052 24.277 -7.942 0.279 0.988 -1.280 H1S MCF 29 MCF H2S H2S H 0 1 N N N -4.971 21.678 -9.171 0.700 1.060 1.761 H2S MCF 30 MCF HO2S HO2S H 0 0 N N N -4.767 22.450 -6.478 0.176 3.348 1.316 HO2S MCF 31 MCF H4S H4S H 0 1 N N N -1.145 22.216 -8.452 3.122 0.965 -1.321 H4S MCF 32 MCF H3S H3S H 0 1 N N N -3.093 20.483 -7.992 2.865 1.909 1.429 H3S MCF 33 MCF HO3S HO3S H 0 0 N N N -2.859 21.229 -6.047 2.071 3.819 0.190 HO3S MCF 34 MCF H5S H5S H 0 1 N N N -2.603 20.769 -10.511 4.763 0.693 0.575 H5S MCF 35 MCF H5SA H5SA H 0 0 N N N -1.421 21.993 -10.992 3.637 -0.458 1.334 H5SA MCF 36 MCF H6S H6S H 0 1 N N N -1.171 18.155 -10.318 6.478 -2.861 -0.184 H6S MCF 37 MCF H6SA H6SA H 0 0 N N N -0.329 18.104 -8.733 6.731 -1.254 0.540 H6SA MCF 38 MCF H6SB H6SB H 0 0 N N N -2.014 18.719 -8.835 5.605 -2.405 1.299 H6SB MCF 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MCF C8 O8 SING N N 1 MCF O8 HO8 SING N N 2 MCF C7 C8 SING N N 3 MCF C8 C9 SING N N 4 MCF C8 H8 SING N N 5 MCF C7 N6 SING N N 6 MCF C7 H7 SING N N 7 MCF C7 H7A SING N N 8 MCF N6 C5 SING N N 9 MCF N6 HN6 SING N N 10 MCF C5 N4 DOUB N N 11 MCF C5 H5 SING N N 12 MCF N4 C10 SING N N 13 MCF C9 C10 DOUB Y N 14 MCF C10 N3 SING Y N 15 MCF C9 N1 SING Y N 16 MCF N1 C2 DOUB Y N 17 MCF C2 N3 SING Y N 18 MCF C2 H2 SING N N 19 MCF N3 C1S SING N N 20 MCF O4S C1S SING N N 21 MCF C1S C2S SING N N 22 MCF C1S H1S SING N N 23 MCF C2S C3S SING N N 24 MCF C2S O2S SING N N 25 MCF C2S H2S SING N N 26 MCF O2S HO2S SING N N 27 MCF O4S C4S SING N N 28 MCF C5S C4S SING N N 29 MCF C4S C3S SING N N 30 MCF C4S H4S SING N N 31 MCF C3S O3S SING N N 32 MCF C3S H3S SING N N 33 MCF O3S HO3S SING N N 34 MCF C5S S5S SING N N 35 MCF C5S H5S SING N N 36 MCF C5S H5SA SING N N 37 MCF S5S C6S SING N N 38 MCF C6S H6S SING N N 39 MCF C6S H6SA SING N N 40 MCF C6S H6SB SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MCF SMILES ACDLabs 10.04 "n2c1c(N=CNCC1O)n(c2)C3OC(C(O)C3O)CSC" MCF SMILES_CANONICAL CACTVS 3.341 "CSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3[C@H](O)CNC=Nc23" MCF SMILES CACTVS 3.341 "CSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3[CH](O)CNC=Nc23" MCF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2N=CNC[C@H]3O)O)O" MCF SMILES "OpenEye OEToolkits" 1.5.0 "CSCC1C(C(C(O1)n2cnc3c2N=CNCC3O)O)O" MCF InChI InChI 1.03 "InChI=1S/C12H18N4O4S/c1-21-3-7-9(18)10(19)12(20-7)16-5-15-8-6(17)2-13-4-14-11(8)16/h4-7,9-10,12,17-19H,2-3H2,1H3,(H,13,14)/t6-,7-,9-,10-,12-/m1/s1" MCF InChIKey InChI 1.03 QLPPCUVJNCMYFD-SANHVUMCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MCF "SYSTEMATIC NAME" ACDLabs 10.04 "(8R)-3-(5-S-methyl-5-thio-beta-D-ribofuranosyl)-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol" MCF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5S)-2-[(8R)-8-hydroxy-7,8-dihydro-6H-imidazo[5,4-d][1,3]diazepin-3-yl]-5-(methylsulfanylmethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MCF "Create component" 2008-10-17 RCSB MCF "Modify descriptor" 2011-06-04 RCSB #