data_MDR # _chem_comp.id MDR _chem_comp.name "9-(2-DEOXY-BETA-D-RIBOFURANOSYL)-6-METHYLPURINE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H14 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-04-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 250.254 _chem_comp.one_letter_code N _chem_comp.three_letter_code MDR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1OVG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MDR "C6'" "C6'" C 0 1 N N N 85.614 65.785 15.158 1.331 0.813 4.855 "C6'" MDR 1 MDR C6 C6 C 0 1 Y N N 86.491 65.303 16.278 0.375 0.193 3.869 C6 MDR 2 MDR N1 N1 N 0 1 Y N N 86.486 63.994 16.768 -0.706 -0.443 4.286 N1 MDR 3 MDR C2 C2 C 0 1 Y N N 87.315 63.632 17.788 -1.552 -0.990 3.433 C2 MDR 4 MDR N3 N3 N 0 1 Y N N 88.189 64.476 18.398 -1.372 -0.937 2.129 N3 MDR 5 MDR C4 C4 C 0 1 Y N N 88.172 65.791 17.883 -0.315 -0.319 1.621 C4 MDR 6 MDR C5 C5 C 0 1 Y N N 87.359 66.255 16.847 0.610 0.283 2.497 C5 MDR 7 MDR N7 N7 N 0 1 Y N N 87.584 67.602 16.581 1.582 0.833 1.729 N7 MDR 8 MDR C8 C8 C 0 1 Y N N 88.505 67.904 17.442 1.316 0.618 0.473 C8 MDR 9 MDR N9 N9 N 0 1 Y N N 88.929 66.920 18.258 0.157 -0.087 0.354 N9 MDR 10 MDR "C1'" "C1'" C 0 1 N N R 89.974 67.152 19.268 -0.469 -0.520 -0.897 "C1'" MDR 11 MDR "C2'" "C2'" C 0 1 N N N 90.103 66.259 20.506 -1.437 0.566 -1.401 "C2'" MDR 12 MDR "C3'" "C3'" C 0 1 N N S 91.053 65.184 20.117 -0.901 0.929 -2.808 "C3'" MDR 13 MDR "O3'" "O3'" O 0 1 N N N 91.602 64.613 21.302 -1.976 1.106 -3.733 "O3'" MDR 14 MDR "C4'" "C4'" C 0 1 N N R 92.037 65.961 19.269 -0.062 -0.323 -3.168 "C4'" MDR 15 MDR "C5'" "C5'" C 0 1 N N N 92.752 65.042 18.250 1.015 0.028 -4.196 "C5'" MDR 16 MDR "O5'" "O5'" O 0 1 N N N 93.787 65.722 17.510 1.773 -1.142 -4.509 "O5'" MDR 17 MDR "O4'" "O4'" O 0 1 N N N 91.294 67.027 18.616 0.535 -0.704 -1.908 "O4'" MDR 18 MDR "H6'1" "1H6'" H 0 0 N N N 85.618 66.829 14.767 2.093 0.084 5.131 "H6'1" MDR 19 MDR "H6'2" "2H6'" H 0 0 N N N 85.793 65.109 14.288 1.807 1.683 4.402 "H6'2" MDR 20 MDR "H6'3" "3H6'" H 0 0 N N N 84.562 65.545 15.440 0.784 1.121 5.747 "H6'3" MDR 21 MDR H2 H2 H 0 1 N N N 87.276 62.588 18.142 -2.422 -1.501 3.818 H2 MDR 22 MDR H8 H8 H 0 1 N N N 88.902 68.932 17.478 1.925 0.951 -0.353 H8 MDR 23 MDR "H1'" "H1'" H 0 1 N N N 89.651 68.147 19.653 -1.010 -1.453 -0.737 "H1'" MDR 24 MDR "H2'1" "1H2'" H 0 0 N N N 90.400 66.809 21.428 -2.451 0.172 -1.469 "H2'1" MDR 25 MDR "H2'2" "2H2'" H 0 0 N N N 89.127 65.879 20.890 -1.408 1.437 -0.746 "H2'2" MDR 26 MDR "H3'" "H3'" H 0 1 N N N 90.639 64.310 19.560 -0.274 1.819 -2.768 "H3'" MDR 27 MDR H1 H1 H 0 1 N N N 92.209 63.925 21.053 -2.511 1.841 -3.402 H1 MDR 28 MDR "H4'" "H4'" H 0 1 N N N 92.845 66.394 19.902 -0.703 -1.120 -3.543 "H4'" MDR 29 MDR "H5'1" "1H5'" H 0 0 N N N 93.153 64.129 18.749 0.543 0.408 -5.101 "H5'1" MDR 30 MDR "H5'2" "2H5'" H 0 0 N N N 92.017 64.564 17.560 1.676 0.789 -3.783 "H5'2" MDR 31 MDR "H5'" "H5'" H 0 1 N N N 94.226 65.157 16.884 2.440 -0.877 -5.158 "H5'" MDR 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MDR "C6'" C6 SING N N 1 MDR "C6'" "H6'1" SING N N 2 MDR "C6'" "H6'2" SING N N 3 MDR "C6'" "H6'3" SING N N 4 MDR C6 N1 DOUB Y N 5 MDR C6 C5 SING Y N 6 MDR N1 C2 SING Y N 7 MDR C2 N3 DOUB Y N 8 MDR C2 H2 SING N N 9 MDR N3 C4 SING Y N 10 MDR C4 C5 DOUB Y N 11 MDR C4 N9 SING Y N 12 MDR C5 N7 SING Y N 13 MDR N7 C8 DOUB Y N 14 MDR C8 N9 SING Y N 15 MDR C8 H8 SING N N 16 MDR N9 "C1'" SING N N 17 MDR "C1'" "C2'" SING N N 18 MDR "C1'" "O4'" SING N N 19 MDR "C1'" "H1'" SING N N 20 MDR "C2'" "C3'" SING N N 21 MDR "C2'" "H2'1" SING N N 22 MDR "C2'" "H2'2" SING N N 23 MDR "C3'" "O3'" SING N N 24 MDR "C3'" "C4'" SING N N 25 MDR "C3'" "H3'" SING N N 26 MDR "O3'" H1 SING N N 27 MDR "C4'" "C5'" SING N N 28 MDR "C4'" "O4'" SING N N 29 MDR "C4'" "H4'" SING N N 30 MDR "C5'" "O5'" SING N N 31 MDR "C5'" "H5'1" SING N N 32 MDR "C5'" "H5'2" SING N N 33 MDR "O5'" "H5'" SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MDR SMILES ACDLabs 10.04 "n2c1c(ncnc1n(c2)C3OC(C(O)C3)CO)C" MDR SMILES_CANONICAL CACTVS 3.341 "Cc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO)O3" MDR SMILES CACTVS 3.341 "Cc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3" MDR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c2c(ncn1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO)O" MDR SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c2c(ncn1)n(cn2)C3CC(C(O3)CO)O" MDR InChI InChI 1.03 "InChI=1S/C11H14N4O3/c1-6-10-11(13-4-12-6)15(5-14-10)9-2-7(17)8(3-16)18-9/h4-5,7-9,16-17H,2-3H2,1H3/t7-,8+,9+/m0/s1" MDR InChIKey InChI 1.03 SJXRKKYXNZWKDB-DJLDLDEBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MDR "SYSTEMATIC NAME" ACDLabs 10.04 "9-(2-deoxy-beta-D-erythro-pentofuranosyl)-6-methyl-9H-purine" MDR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,5R)-2-(hydroxymethyl)-5-(6-methylpurin-9-yl)oxolan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MDR "Create component" 2003-04-04 RCSB MDR "Modify descriptor" 2011-06-04 RCSB #