data_MDZ # _chem_comp.id MDZ _chem_comp.name "N~6~-METHYL-6-OXO-L-LYSINE - 2-[(3-MERCAPTOBUTANOYL)OXY]-3-METHYLBUTANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H26 N2 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-20 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MDZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1W3V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MDZ O43 O43 O 0 1 N N N 4.584 36.552 4.896 1.364 3.063 -0.635 O43 MDZ 1 MDZ C31 C31 C 0 1 N N N 5.505 37.340 5.126 1.029 3.557 0.434 C31 MDZ 2 MDZ O42 O42 O 0 1 N N N 5.420 38.163 6.049 1.919 3.848 1.419 O42 MDZ 3 MDZ C30 C30 C 0 1 N N R 6.739 37.274 4.266 -0.399 3.886 0.831 C30 MDZ 4 MDZ O29 O29 O 0 1 N N N 7.612 38.355 4.678 -1.203 2.890 0.256 O29 MDZ 5 MDZ C13 C13 C 0 1 N N N 8.979 38.106 4.622 -2.505 2.828 0.791 C13 MDZ 6 MDZ O18 O18 O 0 1 N N N 9.385 36.985 4.420 -2.778 3.135 1.945 O18 MDZ 7 MDZ C12 C12 C 0 1 N N R 9.817 39.294 4.854 -3.490 2.279 -0.228 C12 MDZ 8 MDZ C16 C16 C 0 1 N N R 9.441 40.395 3.841 -4.190 3.409 -1.002 C16 MDZ 9 MDZ S17 S17 S 0 1 N N N 9.691 39.855 2.144 -5.024 4.553 0.161 S17 MDZ 10 MDZ C25 C25 C 0 1 N N N 10.266 41.651 4.101 -5.213 2.926 -2.031 C25 MDZ 11 MDZ N11 N11 N 0 1 N N N 11.207 38.867 4.767 -4.396 1.417 0.493 N11 MDZ 12 MDZ C10 C10 C 0 1 N N N 12.133 39.251 5.614 -4.097 0.088 0.754 C10 MDZ 13 MDZ O15 O15 O 0 1 N N N 11.815 39.731 6.687 -3.065 -0.482 0.411 O15 MDZ 14 MDZ C7 C7 C 0 1 N N N 13.548 39.028 5.191 -5.213 -0.596 1.524 C7 MDZ 15 MDZ C4 C4 C 0 1 N N N 14.040 37.742 5.834 -4.903 -2.063 1.821 C4 MDZ 16 MDZ C3 C3 C 0 1 N N N 15.502 37.521 5.460 -6.067 -2.736 2.560 C3 MDZ 17 MDZ C2 C2 C 0 1 N N S 16.079 36.283 6.121 -5.860 -4.229 2.851 C2 MDZ 18 MDZ N14 N14 N 0 1 N N N 16.074 36.452 7.577 -4.733 -4.447 3.757 N14 MDZ 19 MDZ C1 C1 C 0 1 N N N 17.473 36.150 5.592 -5.615 -5.030 1.587 C1 MDZ 20 MDZ O20 O20 O 0 1 N N N 17.670 35.871 4.398 -4.617 -5.687 1.329 O20 MDZ 21 MDZ O19 O19 O 0 1 N N N 18.424 36.257 6.393 -6.683 -4.939 0.753 O19 MDZ 22 MDZ C32 C32 C 0 1 N N N 6.446 37.191 2.847 -0.830 5.281 0.332 C32 MDZ 23 MDZ C37 C37 C 0 1 N N N 7.309 36.909 1.736 0.045 6.391 0.926 C37 MDZ 24 MDZ C33 C33 C 0 1 N N N 5.886 38.462 2.525 -0.774 5.374 -1.199 C33 MDZ 25 MDZ H42 H42 H 0 1 N N N 6.129 38.769 6.226 2.855 3.637 1.217 H42 MDZ 26 MDZ H30 H30 H 0 1 N N N 7.280 36.329 4.424 -0.517 3.799 1.917 H30 MDZ 27 MDZ H12 H12 H 0 1 N N N 9.656 39.734 5.849 -2.939 1.624 -0.915 H12 MDZ 28 MDZ H16 H16 H 0 1 N N N 8.372 40.615 3.976 -3.434 4.002 -1.529 H16 MDZ 29 MDZ H251 1H25 H 0 0 N N N 9.593 42.503 4.277 -6.029 2.357 -1.571 H251 MDZ 30 MDZ H252 2H25 H 0 0 N N N 10.901 41.496 4.986 -4.739 2.282 -2.779 H252 MDZ 31 MDZ H253 3H25 H 0 0 N N N 10.900 41.860 3.227 -5.654 3.770 -2.573 H253 MDZ 32 MDZ H11 H11 H 0 1 N N N 11.467 38.253 4.028 -5.281 1.804 0.806 H11 MDZ 33 MDZ H7C1 1H7C H 0 0 N N N 13.599 38.940 4.096 -6.133 -0.520 0.932 H7C1 MDZ 34 MDZ H7C2 2H7C H 0 0 N N N 14.176 39.874 5.506 -5.367 -0.049 2.461 H7C2 MDZ 35 MDZ H4C1 1H4C H 0 0 N N N 13.948 37.819 6.927 -3.988 -2.124 2.421 H4C1 MDZ 36 MDZ H4C2 2H4C H 0 0 N N N 13.435 36.896 5.477 -4.701 -2.588 0.880 H4C2 MDZ 37 MDZ H3C1 1H3C H 0 0 N N N 15.576 37.407 4.368 -6.240 -2.209 3.508 H3C1 MDZ 38 MDZ H3C2 2H3C H 0 0 N N N 16.077 38.391 5.810 -6.982 -2.608 1.967 H3C2 MDZ 39 MDZ H2 H2 H 0 1 N N N 15.491 35.379 5.902 -6.759 -4.635 3.330 H2 MDZ 40 MDZ H141 1H14 H 0 0 N N N 15.102 36.491 7.915 -3.832 -4.591 3.356 H141 MDZ 41 MDZ H142 2H14 H 0 0 N N N 16.559 35.656 8.017 -4.933 -4.646 4.712 H142 MDZ 42 MDZ H19 H19 H 0 1 N N N 19.308 36.172 6.057 -6.551 -5.460 -0.068 H19 MDZ 43 MDZ H32 H32 H 0 1 N N N 5.919 36.226 2.876 -1.866 5.473 0.642 H32 MDZ 44 MDZ H371 1H37 H 0 0 N N N 7.405 35.820 1.613 -0.067 6.448 2.013 H371 MDZ 45 MDZ H372 2H37 H 0 0 N N N 6.883 37.346 0.821 -0.240 7.369 0.522 H372 MDZ 46 MDZ H373 3H37 H 0 0 N N N 8.301 37.345 1.923 1.103 6.227 0.698 H373 MDZ 47 MDZ H331 1H33 H 0 0 N N N 4.788 38.395 2.542 -1.463 4.666 -1.669 H331 MDZ 48 MDZ H332 2H33 H 0 0 N N N 6.219 39.207 3.263 0.236 5.166 -1.571 H332 MDZ 49 MDZ H333 3H33 H 0 0 N N N 6.219 38.765 1.521 -1.058 6.376 -1.538 H333 MDZ 50 MDZ HS1 HS1 H 0 1 N N N 9.751 40.892 1.363 -5.739 5.185 -0.777 HS1 MDZ 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MDZ O43 C31 DOUB N N 1 MDZ C31 O42 SING N N 2 MDZ C31 C30 SING N N 3 MDZ O42 H42 SING N N 4 MDZ C30 O29 SING N N 5 MDZ C30 C32 SING N N 6 MDZ C30 H30 SING N N 7 MDZ O29 C13 SING N N 8 MDZ C13 O18 DOUB N N 9 MDZ C13 C12 SING N N 10 MDZ C12 C16 SING N N 11 MDZ C12 N11 SING N N 12 MDZ C12 H12 SING N N 13 MDZ C16 S17 SING N N 14 MDZ C16 C25 SING N N 15 MDZ C16 H16 SING N N 16 MDZ C25 H251 SING N N 17 MDZ C25 H252 SING N N 18 MDZ C25 H253 SING N N 19 MDZ N11 C10 SING N N 20 MDZ N11 H11 SING N N 21 MDZ C10 O15 DOUB N N 22 MDZ C10 C7 SING N N 23 MDZ C7 C4 SING N N 24 MDZ C7 H7C1 SING N N 25 MDZ C7 H7C2 SING N N 26 MDZ C4 C3 SING N N 27 MDZ C4 H4C1 SING N N 28 MDZ C4 H4C2 SING N N 29 MDZ C3 C2 SING N N 30 MDZ C3 H3C1 SING N N 31 MDZ C3 H3C2 SING N N 32 MDZ C2 N14 SING N N 33 MDZ C2 C1 SING N N 34 MDZ C2 H2 SING N N 35 MDZ N14 H141 SING N N 36 MDZ N14 H142 SING N N 37 MDZ C1 O20 DOUB N N 38 MDZ C1 O19 SING N N 39 MDZ O19 H19 SING N N 40 MDZ C32 C37 SING N N 41 MDZ C32 C33 SING N N 42 MDZ C32 H32 SING N N 43 MDZ C37 H371 SING N N 44 MDZ C37 H372 SING N N 45 MDZ C37 H373 SING N N 46 MDZ C33 H331 SING N N 47 MDZ C33 H332 SING N N 48 MDZ C33 H333 SING N N 49 MDZ HS1 S17 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MDZ SMILES ACDLabs 10.04 "O=C(OC(C(=O)O)C(C)C)C(NC(=O)CCCC(C(=O)O)N)C(S)C" MDZ SMILES_CANONICAL CACTVS 3.341 "CC(C)[C@@H](OC(=O)[C@@H](NC(=O)CCC[C@H](N)C(O)=O)[C@@H](C)S)C(O)=O" MDZ SMILES CACTVS 3.341 "CC(C)[CH](OC(=O)[CH](NC(=O)CCC[CH](N)C(O)=O)[CH](C)S)C(O)=O" MDZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)[C@H](C(=O)O)OC(=O)[C@H]([C@@H](C)S)NC(=O)CCC[C@@H](C(=O)O)N" MDZ SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)C(C(=O)O)OC(=O)C(C(C)S)NC(=O)CCCC(C(=O)O)N" MDZ InChI InChI 1.03 "InChI=1S/C15H26N2O7S/c1-7(2)12(14(21)22)24-15(23)11(8(3)25)17-10(18)6-4-5-9(16)13(19)20/h7-9,11-12,25H,4-6,16H2,1-3H3,(H,17,18)(H,19,20)(H,21,22)/t8-,9+,11+,12-/m1/s1" MDZ InChIKey InChI 1.03 SEWFXDOLNMAGTP-LLHIFLOGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MDZ "SYSTEMATIC NAME" ACDLabs 10.04 "N~6~-[(1R,2R)-1-({[(1R)-1-carboxy-2-methylpropyl]oxy}carbonyl)-2-sulfanylpropyl]-6-oxo-L-lysine" MDZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-6-[[(2R,3R)-1-[(2R)-1-hydroxy-3-methyl-1-oxo-butan-2-yl]oxy-1-oxo-3-sulfanyl-butan-2-yl]amino]-6-oxo-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MDZ "Create component" 2004-07-20 EBI MDZ "Modify descriptor" 2011-06-04 RCSB #