data_ME3 # _chem_comp.id ME3 _chem_comp.name RUTHENIUM-PYRIDOCARBAZOLE-3 _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H18 N3 O6 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-08-18 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 569.508 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ME3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2BZJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ME3 O5 O5 O 0 1 N N N -21.632 -34.244 -6.512 -21.632 -34.244 -6.512 O5 ME3 1 ME3 C24 C24 C 0 1 N N N -22.673 -34.587 -5.938 -22.673 -34.587 -5.938 C24 ME3 2 ME3 O4 O4 O 0 1 N N N -23.306 -35.741 -6.250 -23.306 -35.741 -6.250 O4 ME3 3 ME3 C25 C25 C 0 1 N N N -22.424 -36.694 -6.841 -22.424 -36.694 -6.841 C25 ME3 4 ME3 C26 C26 C 0 1 N N N -23.157 -38.029 -7.041 -23.157 -38.029 -7.041 C26 ME3 5 ME3 C6 C6 C 0 1 N N N -23.193 -33.734 -4.856 -23.193 -33.734 -4.856 C6 ME3 6 ME3 C7 C7 C 0 1 N N N -22.387 -32.677 -4.465 -22.387 -32.677 -4.465 C7 ME3 7 ME3 C8 C8 C 0 1 N N N -23.028 -31.965 -3.435 -23.028 -31.965 -3.435 C8 ME3 8 ME3 C9 C9 C 0 1 N N N -24.281 -32.592 -3.220 -24.281 -32.592 -3.220 C9 ME3 9 ME3 C5 C5 C 0 1 N N N -24.405 -33.720 -4.070 -24.405 -33.720 -4.070 C5 ME3 10 ME3 RU1 RU1 RU 0 0 N N N -22.598 -34.007 -2.749 -22.598 -34.007 -2.749 RU1 ME3 11 ME3 C4 C4 C 0 1 N N N -20.789 -34.373 -2.766 -20.789 -34.373 -2.766 C4 ME3 12 ME3 O3 O3 O 0 1 N N N -19.694 -34.522 -2.911 -19.694 -34.522 -2.911 O3 ME3 13 ME3 N1 N1 N 0 1 Y N N -22.537 -33.649 -0.668 -22.537 -33.649 -0.668 N1 ME3 14 ME3 C10 C10 C 0 1 Y N N -22.898 -34.729 -0.003 -22.898 -34.729 -0.003 C10 ME3 15 ME3 C3 C3 C 0 1 Y N N -23.264 -35.920 -0.680 -23.264 -35.920 -0.680 C3 ME3 16 ME3 N3 N3 N 0 1 Y N N -23.193 -35.915 -2.063 -23.193 -35.915 -2.063 N3 ME3 17 ME3 C22 C22 C 0 1 Y N N -23.649 -37.033 0.092 -23.649 -37.033 0.092 C22 ME3 18 ME3 C23 C23 C 0 1 Y N N -24.004 -38.211 -0.649 -24.004 -38.211 -0.649 C23 ME3 19 ME3 C1 C1 C 0 1 Y N N -23.935 -38.204 -2.035 -23.935 -38.204 -2.035 C1 ME3 20 ME3 C2 C2 C 0 1 Y N N -23.533 -37.048 -2.734 -23.533 -37.048 -2.734 C2 ME3 21 ME3 C21 C21 C 0 1 Y N N -23.653 -36.841 1.535 -23.653 -36.841 1.535 C21 ME3 22 ME3 C20 C20 C 0 1 N N N -24.019 -37.781 2.584 -24.019 -37.781 2.584 C20 ME3 23 ME3 O2 O2 O 0 1 N N N -24.395 -38.914 2.456 -24.395 -38.914 2.456 O2 ME3 24 ME3 N2 N2 N 0 1 N N N -23.879 -37.127 3.808 -23.879 -37.127 3.808 N2 ME3 25 ME3 C19 C19 C 0 1 N N N -23.446 -35.816 3.649 -23.446 -35.816 3.649 C19 ME3 26 ME3 O1 O1 O 0 1 N N N -23.241 -34.994 4.527 -23.241 -34.994 4.527 O1 ME3 27 ME3 C18 C18 C 0 1 Y N N -23.308 -35.648 2.168 -23.308 -35.648 2.168 C18 ME3 28 ME3 C17 C17 C 0 1 Y N N -22.901 -34.544 1.407 -22.901 -34.544 1.407 C17 ME3 29 ME3 C16 C16 C 0 1 Y N N -22.479 -33.208 1.567 -22.479 -33.208 1.567 C16 ME3 30 ME3 C11 C11 C 0 1 Y N N -22.252 -32.687 0.255 -22.252 -32.687 0.255 C11 ME3 31 ME3 C12 C12 C 0 1 Y N N -21.835 -31.378 0.061 -21.835 -31.378 0.061 C12 ME3 32 ME3 C13 C13 C 0 1 Y N N -21.608 -30.599 1.195 -21.608 -30.599 1.195 C13 ME3 33 ME3 C14 C14 C 0 1 Y N N -21.831 -31.123 2.481 -21.831 -31.123 2.481 C14 ME3 34 ME3 O6 O6 O 0 1 N N N -21.617 -30.336 3.578 -21.617 -30.336 3.578 O6 ME3 35 ME3 C15 C15 C 0 1 Y N N -22.262 -32.412 2.676 -22.262 -32.412 2.676 C15 ME3 36 ME3 H251 H251 H 0 0 N N N -22.079 -36.317 -7.815 -22.080 -36.317 -7.815 H251 ME3 37 ME3 H252 H252 H 0 0 N N N -21.558 -36.848 -6.181 -21.558 -36.848 -6.181 H252 ME3 38 ME3 H261 H261 H 0 0 N N N -22.472 -38.759 -7.497 -22.472 -38.759 -7.497 H261 ME3 39 ME3 H262 H262 H 0 0 N N N -23.501 -38.408 -6.067 -23.501 -38.408 -6.067 H262 ME3 40 ME3 H263 H263 H 0 0 N N N -24.023 -37.876 -7.702 -24.023 -37.876 -7.702 H263 ME3 41 ME3 H7 H7 H 0 1 N N N -21.331 -32.549 -4.747 -21.331 -32.549 -4.747 H7 ME3 42 ME3 H8C1 H8C1 H 0 0 N N N -22.569 -31.203 -2.788 -22.569 -31.203 -2.788 H8C1 ME3 43 ME3 H9C1 H9C1 H 0 0 N N N -24.905 -32.424 -2.330 -24.905 -32.424 -2.330 H9C1 ME3 44 ME3 H5C1 H5C1 H 0 0 N N N -25.126 -34.545 -3.973 -25.126 -34.545 -3.973 H5C1 ME3 45 ME3 H4C1 H4C1 H 0 0 N N N -20.808 -34.882 -1.814 -20.808 -34.882 -1.814 H4C1 ME3 46 ME3 H23 H23 H 0 1 N N N -24.324 -39.101 -0.128 -24.324 -39.101 -0.128 H23 ME3 47 ME3 HA HA H 0 1 N N N -24.193 -39.097 -2.586 -24.193 -39.097 -2.586 HA ME3 48 ME3 H2 H2 H 0 1 N N N -23.495 -37.062 -3.813 -23.495 -37.062 -3.813 H2 ME3 49 ME3 HB HB H 0 1 N N N -24.068 -37.551 4.694 -24.068 -37.551 4.694 HB ME3 50 ME3 H12 H12 H 0 1 N N N -21.692 -30.977 -0.932 -21.691 -30.977 -0.932 H12 ME3 51 ME3 H13 H13 H 0 1 N N N -21.258 -29.583 1.085 -21.257 -29.583 1.085 H13 ME3 52 ME3 H6 H6 H 0 1 N N N -21.810 -30.831 4.366 -21.810 -30.831 4.366 H6 ME3 53 ME3 H15 H15 H 0 1 N N N -22.428 -32.795 3.672 -22.427 -32.795 3.672 H15 ME3 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ME3 O5 C24 DOUB N N 1 ME3 C24 O4 SING N N 2 ME3 C24 C6 SING N N 3 ME3 O4 C25 SING N N 4 ME3 C25 C26 SING N N 5 ME3 C25 H251 SING N N 6 ME3 C25 H252 SING N N 7 ME3 C26 H261 SING N N 8 ME3 C26 H262 SING N N 9 ME3 C26 H263 SING N N 10 ME3 C6 C7 SING N N 11 ME3 C6 C5 SING N N 12 ME3 C6 RU1 SING N N 13 ME3 C7 C8 SING N N 14 ME3 C7 RU1 SING N N 15 ME3 C7 H7 SING N N 16 ME3 C8 C9 SING N N 17 ME3 C8 RU1 SING N N 18 ME3 C8 H8C1 SING N N 19 ME3 C9 C5 SING N N 20 ME3 C9 RU1 SING N N 21 ME3 C9 H9C1 SING N N 22 ME3 C5 RU1 SING N N 23 ME3 C5 H5C1 SING N N 24 ME3 RU1 C4 SING N N 25 ME3 RU1 N1 SING N N 26 ME3 RU1 N3 SING N N 27 ME3 C4 O3 TRIP N N 28 ME3 C4 H4C1 SING N N 29 ME3 N1 C10 SING Y N 30 ME3 N1 C11 SING Y N 31 ME3 C10 C3 SING Y N 32 ME3 C10 C17 DOUB Y N 33 ME3 C3 N3 SING Y N 34 ME3 C3 C22 DOUB Y N 35 ME3 N3 C2 DOUB Y N 36 ME3 C22 C23 SING Y N 37 ME3 C22 C21 SING Y N 38 ME3 C23 C1 DOUB Y N 39 ME3 C23 H23 SING N N 40 ME3 C1 C2 SING Y N 41 ME3 C1 HA SING N N 42 ME3 C2 H2 SING N N 43 ME3 C21 C20 SING N N 44 ME3 C21 C18 DOUB Y N 45 ME3 C20 O2 DOUB N N 46 ME3 C20 N2 SING N N 47 ME3 N2 C19 SING N N 48 ME3 N2 HB SING N N 49 ME3 C19 O1 DOUB N N 50 ME3 C19 C18 SING N N 51 ME3 C18 C17 SING Y N 52 ME3 C17 C16 SING Y N 53 ME3 C16 C11 SING Y N 54 ME3 C16 C15 DOUB Y N 55 ME3 C11 C12 DOUB Y N 56 ME3 C12 C13 SING Y N 57 ME3 C12 H12 SING N N 58 ME3 C13 C14 DOUB Y N 59 ME3 C13 H13 SING N N 60 ME3 C14 O6 SING N N 61 ME3 C14 C15 SING Y N 62 ME3 O6 H6 SING N N 63 ME3 C15 H15 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ME3 InChI InChI 1.06 "InChI=1S/C17H9N3O3.C8H9O2.CHO.Ru/c21-7-3-4-10-9(6-7)11-13-12(16(22)20-17(13)23)8-2-1-5-18-14(8)15(11)19-10;1-2-10-8(9)7-5-3-4-6-7;1-2;/h1-6H,(H3,18,19,20,21,22,23);3-6H,2H2,1H3;1H;/q;;;+1/p-1" ME3 InChIKey InChI 1.06 PFOCZSJQLYFAHF-UHFFFAOYSA-M ME3 SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)C1CCCC1.Oc2ccc3n([Ru])c4c5ncccc5c6C(=O)NC(=O)c6c4c3c2.C#[O]" ME3 SMILES CACTVS 3.385 "CCOC(=O)C1CCCC1.Oc2ccc3n([Ru])c4c5ncccc5c6C(=O)NC(=O)c6c4c3c2.C#[O]" ME3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C12C3[Ru]1456(C3C4C52)(n7c8ccc(cc8c9c7c1c(c2c9C(=O)NC2=O)C=CC=[N]61)O)[CH]#O" ME3 SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C12C3[Ru]1456(C3C4C52)(n7c8ccc(cc8c9c7c1c(c2c9C(=O)NC2=O)C=CC=[N]61)O)[CH]#O" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ME3 "Create component" 2005-08-18 EBI ME3 "Modify descriptor" 2023-09-23 RCSB #