[(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
DNA linking
ATOMN
C10 H17 N3 O7 P
DC
1
2009-05-21
2011-06-04
N
REL
322.232
ME6
N
Corina
N
3H8X
RCSB
O2
O
0
1
N
N
N
-8.930
9.508
-2.417
-3.272
-0.754
1.844
O2
ME6
1
C2
C
0
1
N
N
N
-8.302
8.516
-1.984
-3.260
-0.138
0.792
C2
ME6
2
N3
N
1
1
N
N
N
-9.020
7.416
-1.742
-4.297
0.636
0.474
N3
ME6
3
C20
C
0
1
N
N
N
-10.467
7.450
-2.007
-5.434
0.737
1.391
C20
ME6
4
C4
C
0
1
N
N
N
-8.433
6.295
-1.283
-4.310
1.317
-0.665
C4
ME6
5
N4
N
0
1
N
N
N
-9.167
5.174
-1.051
-5.385
2.113
-0.983
N4
ME6
6
C5
C
0
1
N
N
N
-7.061
6.271
-1.040
-3.214
1.219
-1.548
C5
ME6
7
C6
C
0
1
N
N
N
-6.305
7.411
-1.275
-2.168
0.429
-1.210
C6
ME6
8
N1
N
0
1
N
N
N
-6.888
8.525
-1.766
-2.198
-0.247
-0.027
N1
ME6
9
C1'
C
0
1
N
N
R
-5.993
9.700
-1.945
-1.070
-1.101
0.353
C1*
ME6
10
O4'
O
0
1
N
N
N
-6.319
10.788
-2.828
0.170
-0.365
0.265
O4*
ME6
11
C2'
C
0
1
N
N
N
-4.531
9.358
-2.213
-0.913
-2.264
-0.652
C2*
ME6
12
C3'
C
0
1
N
N
S
-4.029
10.778
-2.275
0.615
-2.446
-0.780
C3*
ME6
13
O3'
O
0
1
N
N
N
-4.180
11.325
-0.978
1.002
-3.753
-0.351
O3*
ME6
14
C4'
C
0
1
N
N
R
-5.066
11.392
-3.175
1.202
-1.370
0.164
C4*
ME6
15
C5'
C
0
1
N
N
N
-4.767
10.784
-4.517
2.474
-0.768
-0.436
C5*
ME6
16
O5'
O
0
1
N
N
N
-6.032
10.289
-4.852
3.022
0.191
0.471
O5*
ME6
17
P
P
0
1
N
N
N
-6.143
8.904
-5.616
4.366
1.022
0.163
P
ME6
18
O3P
O
0
1
N
Y
N
-5.452
7.861
-4.762
4.120
1.991
-1.099
O1P
ME6
19
O2P
O
0
1
N
N
N
-5.681
9.101
-7.047
4.757
1.906
1.450
O2P
ME6
20
H20
H
0
1
N
N
N
-11.015
7.458
-1.053
-5.266
1.557
2.089
H20
ME6
21
H20A
H
0
0
N
N
N
-10.714
8.356
-2.579
-6.345
0.924
0.822
H20A
ME6
22
H20B
H
0
0
N
N
N
-10.754
6.560
-2.587
-5.538
-0.196
1.946
H20B
ME6
23
HN4
H
0
1
N
N
N
-8.577
4.440
-0.715
-6.137
2.178
-0.373
HN4
ME6
24
H5
H
0
1
N
N
N
-6.589
5.372
-0.672
-3.210
1.767
-2.478
H5
ME6
25
H6
H
0
1
N
N
N
-5.246
7.407
-1.064
-1.318
0.337
-1.870
H6
ME6
26
H1'
H
0
1
N
N
N
-6.190
10.089
-0.935
-1.211
-1.488
1.362
H1*
ME6
27
H2'
H
0
1
N
N
N
-4.062
8.751
-1.425
-1.375
-3.171
-0.261
H2*
ME6
28
H2'A
H
0
0
N
N
N
-4.326
8.725
-3.089
-1.351
-1.999
-1.614
H2*A
ME6
29
H3'
H
0
1
N
N
N
-2.989
10.914
-2.606
0.936
-2.272
-1.808
H3*
ME6
30
HO3'
H
0
0
N
Y
N
-4.214
10.622
-0.339
0.613
-4.469
-0.872
HO3*
ME6
31
H4'
H
0
1
N
N
N
-5.079
12.491
-3.128
1.411
-1.800
1.144
H4*
ME6
32
H5'
H
0
1
N
N
N
-4.394
11.521
-5.243
3.203
-1.559
-0.612
H5*
ME6
33
H5'A
H
0
0
N
N
N
-3.967
10.029
-4.510
2.234
-0.279
-1.380
H5*A
ME6
34
HO3P
H
0
0
N
Y
N
-5.307
7.075
-5.276
3.410
2.634
-0.969
HO1P
ME6
35
HO2P
H
0
0
N
N
N
-6.437
9.142
-7.621
5.559
2.435
1.335
HO2P
ME6
36
O1P
O
0
1
N
N
N
-6.695
7.229
-6.104
5.468
0.083
-0.144
O7
ME6
37
H17
H
0
1
N
N
N
-10.153
5.095
-1.195
-5.392
2.610
-1.816
H17
ME6
38
doub
N
N
1
sing
N
N
2
sing
N
N
3
doub
N
N
4
sing
N
N
5
sing
N
N
6
sing
N
N
7
sing
N
N
8
sing
N
N
9
sing
N
N
10
sing
N
N
11
sing
N
N
12
doub
N
N
13
sing
N
N
14
sing
N
N
15
sing
N
N
16
sing
N
N
17
sing
N
N
18
sing
N
N
19
sing
N
N
20
sing
N
N
21
sing
N
N
22
sing
N
N
23
sing
N
N
24
sing
N
N
25
sing
N
N
26
sing
N
N
27
sing
N
N
28
sing
N
N
29
sing
N
N
30
sing
N
N
31
sing
N
N
32
sing
N
N
33
sing
N
N
34
doub
N
N
35
sing
N
N
36
sing
N
N
37
sing
N
N
38
sing
N
N
39
C[N+]1=C(N)C=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C1=O
C[N+]1=C(N)C=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C1=O
C[N+]1=C(C=CN(C1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)N
C[N+]1=C(C=CN(C1=O)C2CC(C(O2)COP(=O)(O)O)O)N
InChI=1S/C10H16N3O7P/c1-12-8(11)2-3-13(10(12)15)9-4-6(14)7(20-9)5-19-21(16,17)18/h2-3,6-7,9,11,14H,4-5H2,1H3,(H2,16,17,18)/p+1/t6-,7+,9+/m0/s1
SXDBYGVVLMSJDZ-LKEWCRSYSA-O
[(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
RCSB
RCSB