data_MEL # _chem_comp.id MEL _chem_comp.name "[((1R)-2-{(2S)-2-[({4-[AMINO(IMINO)METHYL]BENZYL}AMINO)CARBONYL]AZETIDINYL}-1-CYCLOHEXYL-2-OXOETHYL)AMINO]ACETIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "MELAGATRAN (ASTRA-ZENECA)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-10-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.513 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MEL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1K1P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MEL C1 C1 C 0 1 N N N 40.262 24.976 55.833 1.117 0.089 -4.568 C1 MEL 1 MEL C2 C2 C 0 1 N N N 39.084 25.912 55.382 2.281 0.894 -3.987 C2 MEL 2 MEL C3 C3 C 0 1 N N N 37.731 25.353 55.925 3.512 0.727 -4.880 C3 MEL 3 MEL C4 C4 C 0 1 N N N 37.778 25.294 57.464 3.898 -0.751 -4.947 C4 MEL 4 MEL C5 C5 C 0 1 N N N 38.962 24.407 57.916 2.734 -1.556 -5.527 C5 MEL 5 MEL C6 C6 C 0 1 N N N 40.305 24.961 57.384 1.503 -1.389 -4.634 C6 MEL 6 MEL N7 N7 N 0 1 N N N 42.758 25.096 56.050 -1.267 -0.398 -4.304 N7 MEL 7 MEL C8 C8 C 0 1 N N R 41.612 25.292 55.112 -0.113 0.255 -3.674 C8 MEL 8 MEL C9 C9 C 0 1 N N N 41.749 24.467 53.841 0.151 -0.375 -2.332 C9 MEL 9 MEL O0 O0 O 0 1 N N N 42.338 23.411 53.862 -0.045 -1.561 -2.170 O0 MEL 10 MEL N11 N11 N 0 1 N N N 41.059 24.876 52.778 0.605 0.377 -1.311 N11 MEL 11 MEL C12 C12 C 0 1 N N S 41.367 24.357 51.397 0.889 0.127 0.115 C12 MEL 12 MEL C13 C13 C 0 1 N N N 42.826 23.870 51.185 -0.286 0.381 1.022 C13 MEL 13 MEL O14 O14 O 0 1 N N N 43.743 24.685 51.390 -1.352 0.720 0.552 O14 MEL 14 MEL N15 N15 N 0 1 N N N 43.053 22.632 50.729 -0.154 0.231 2.355 N15 MEL 15 MEL C16 C16 C 0 1 N N N 44.426 22.159 50.474 -1.298 0.478 3.236 C16 MEL 16 MEL C17 C17 C 0 1 Y N N 44.795 21.040 51.428 -0.889 0.242 4.667 C17 MEL 17 MEL C18 C18 C 0 1 Y N N 45.083 21.360 52.765 -0.379 1.286 5.419 C18 MEL 18 MEL C19 C19 C 0 1 Y N N 45.433 20.336 53.671 -0.003 1.076 6.730 C19 MEL 19 MEL C20 C20 C 0 1 Y N N 45.505 18.990 53.247 -0.139 -0.190 7.297 C20 MEL 20 MEL C21 C21 C 0 1 Y N N 45.237 18.675 51.907 -0.648 -1.239 6.532 C21 MEL 21 MEL C22 C22 C 0 1 Y N N 44.883 19.692 51.011 -1.026 -1.016 5.224 C22 MEL 22 MEL C23 C23 C 0 1 N N N 45.874 17.902 54.214 0.262 -0.422 8.703 C23 MEL 23 MEL N24 N24 N 0 1 N N N 46.657 18.178 55.214 0.742 0.557 9.414 N24 MEL 24 MEL N25 N25 N 0 1 N N N 45.405 16.684 54.025 0.127 -1.675 9.261 N25 MEL 25 MEL C26 C26 C 0 1 N N N 41.045 25.745 50.820 1.869 1.311 0.023 C26 MEL 26 MEL C27 C27 C 0 1 N N N 41.271 26.258 52.274 1.022 1.789 -1.170 C27 MEL 27 MEL C28 C28 C 0 1 N N N 44.094 25.528 55.573 -1.850 0.577 -5.235 C28 MEL 28 MEL C29 C29 C 0 1 N N N 45.212 25.106 56.478 -3.116 0.013 -5.827 C29 MEL 29 MEL O30 O30 O 0 1 N N N 45.027 25.142 57.702 -3.824 0.735 -6.710 O30 MEL 30 MEL O31 O31 O 0 1 N N N 46.305 24.740 55.975 -3.494 -1.088 -5.506 O31 MEL 31 MEL H11 1H1 H 0 1 N N N 40.074 23.929 55.500 0.890 0.451 -5.571 H11 MEL 32 MEL H21 1H2 H 0 1 N N N 39.064 26.060 54.277 2.007 1.948 -3.940 H21 MEL 33 MEL H22 2H2 H 0 1 N N N 39.251 26.973 55.683 2.508 0.532 -2.984 H22 MEL 34 MEL H31 1H3 H 0 1 N N N 37.472 24.367 55.474 3.285 1.089 -5.883 H31 MEL 35 MEL H32 2H3 H 0 1 N N N 36.856 25.935 55.553 4.342 1.301 -4.467 H32 MEL 36 MEL H41 1H4 H 0 1 N N N 36.810 24.956 57.901 4.775 -0.869 -5.583 H41 MEL 37 MEL H42 2H4 H 0 1 N N N 37.816 26.310 57.922 4.125 -1.112 -3.944 H42 MEL 38 MEL H51 1H5 H 0 1 N N N 38.812 23.341 57.624 2.506 -1.194 -6.530 H51 MEL 39 MEL H52 2H5 H 0 1 N N N 38.980 24.278 59.023 3.008 -2.610 -5.575 H52 MEL 40 MEL H61 1H6 H 0 1 N N N 40.553 25.960 57.813 1.730 -1.751 -3.631 H61 MEL 41 MEL H62 2H6 H 0 1 N N N 41.184 24.400 57.780 0.673 -1.963 -5.048 H62 MEL 42 MEL H71 1H7 H 0 1 N N N 42.799 24.119 56.340 -0.902 -1.152 -4.866 H71 MEL 43 MEL H81 1H8 H 0 1 N N N 41.620 26.363 54.802 -0.325 1.316 -3.542 H81 MEL 44 MEL H121 1H12 H 0 0 N N N 40.855 23.448 51.003 1.374 -0.829 0.305 H121 MEL 45 MEL H151 1H15 H 0 0 N N N 42.214 22.072 50.582 0.697 -0.039 2.730 H151 MEL 46 MEL H161 1H16 H 0 0 N N N 45.164 22.994 50.512 -2.111 -0.198 2.974 H161 MEL 47 MEL H162 2H16 H 0 0 N N N 44.568 21.858 49.410 -1.631 1.509 3.119 H162 MEL 48 MEL H181 1H18 H 0 0 N N N 45.035 22.409 53.102 -0.275 2.266 4.979 H181 MEL 49 MEL H191 1H19 H 0 0 N N N 45.653 20.590 54.722 0.394 1.891 7.316 H191 MEL 50 MEL H211 1H21 H 0 0 N N N 45.304 17.631 51.559 -0.755 -2.223 6.966 H211 MEL 51 MEL H221 1H22 H 0 0 N N N 44.670 19.427 49.962 -1.424 -1.827 4.632 H221 MEL 52 MEL H241 1H24 H 0 0 N N N 47.152 17.754 54.429 0.837 1.439 9.021 H241 MEL 53 MEL H251 1H25 H 0 0 N N N 45.652 16.381 53.083 0.390 -1.827 10.182 H251 MEL 54 MEL H252 2H25 H 0 0 N N N 45.656 15.945 54.682 -0.234 -2.404 8.733 H252 MEL 55 MEL H261 1H26 H 0 0 N N N 40.104 25.950 50.259 1.831 1.980 0.883 H261 MEL 56 MEL H262 2H26 H 0 0 N N N 41.599 26.168 49.949 2.884 1.021 -0.247 H262 MEL 57 MEL H271 1H27 H 0 0 N N N 42.201 26.815 52.535 0.210 2.461 -0.892 H271 MEL 58 MEL H272 2H27 H 0 0 N N N 40.661 27.102 52.673 1.614 2.159 -2.008 H272 MEL 59 MEL H281 1H28 H 0 0 N N N 44.117 26.630 55.403 -2.078 1.498 -4.699 H281 MEL 60 MEL H282 2H28 H 0 0 N N N 44.275 25.177 54.530 -1.139 0.788 -6.033 H282 MEL 61 MEL H301 1H30 H 0 0 N N N 45.736 24.875 58.276 -4.636 0.373 -7.089 H301 MEL 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MEL C1 C2 SING N N 1 MEL C1 C6 SING N N 2 MEL C1 C8 SING N N 3 MEL C1 H11 SING N N 4 MEL C2 C3 SING N N 5 MEL C2 H21 SING N N 6 MEL C2 H22 SING N N 7 MEL C3 C4 SING N N 8 MEL C3 H31 SING N N 9 MEL C3 H32 SING N N 10 MEL C4 C5 SING N N 11 MEL C4 H41 SING N N 12 MEL C4 H42 SING N N 13 MEL C5 C6 SING N N 14 MEL C5 H51 SING N N 15 MEL C5 H52 SING N N 16 MEL C6 H61 SING N N 17 MEL C6 H62 SING N N 18 MEL N7 C8 SING N N 19 MEL N7 C28 SING N N 20 MEL N7 H71 SING N N 21 MEL C8 C9 SING N N 22 MEL C8 H81 SING N N 23 MEL C9 O0 DOUB N N 24 MEL C9 N11 SING N N 25 MEL N11 C12 SING N N 26 MEL N11 C27 SING N N 27 MEL C12 C13 SING N N 28 MEL C12 C26 SING N N 29 MEL C12 H121 SING N N 30 MEL C13 O14 DOUB N N 31 MEL C13 N15 SING N N 32 MEL N15 C16 SING N N 33 MEL N15 H151 SING N N 34 MEL C16 C17 SING N N 35 MEL C16 H161 SING N N 36 MEL C16 H162 SING N N 37 MEL C17 C18 DOUB Y N 38 MEL C17 C22 SING Y N 39 MEL C18 C19 SING Y N 40 MEL C18 H181 SING N N 41 MEL C19 C20 DOUB Y N 42 MEL C19 H191 SING N N 43 MEL C20 C21 SING Y N 44 MEL C20 C23 SING N N 45 MEL C21 C22 DOUB Y N 46 MEL C21 H211 SING N N 47 MEL C22 H221 SING N N 48 MEL C23 N24 DOUB N N 49 MEL C23 N25 SING N N 50 MEL N24 H241 SING N N 51 MEL N25 H251 SING N N 52 MEL N25 H252 SING N N 53 MEL C26 C27 SING N N 54 MEL C26 H261 SING N N 55 MEL C26 H262 SING N N 56 MEL C27 H271 SING N N 57 MEL C27 H272 SING N N 58 MEL C28 C29 SING N N 59 MEL C28 H281 SING N N 60 MEL C28 H282 SING N N 61 MEL C29 O30 SING N N 62 MEL C29 O31 DOUB N N 63 MEL O30 H301 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MEL SMILES ACDLabs 10.04 "O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)C(NCC(=O)O)C2CCCCC2)CC3" MEL SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(CNC(=O)[C@@H]2CCN2C(=O)[C@H](NCC(O)=O)C3CCCCC3)cc1" MEL SMILES CACTVS 3.341 "NC(=N)c1ccc(CNC(=O)[CH]2CCN2C(=O)[CH](NCC(O)=O)C3CCCCC3)cc1" MEL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CNC(=O)[C@@H]2CCN2C(=O)[C@@H](C3CCCCC3)NCC(=O)O)C(=N)N" MEL SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CNC(=O)C2CCN2C(=O)C(C3CCCCC3)NCC(=O)O)C(=N)N" MEL InChI InChI 1.03 "InChI=1S/C22H31N5O4/c23-20(24)16-8-6-14(7-9-16)12-26-21(30)17-10-11-27(17)22(31)19(25-13-18(28)29)15-4-2-1-3-5-15/h6-9,15,17,19,25H,1-5,10-13H2,(H3,23,24)(H,26,30)(H,28,29)/t17-,19+/m0/s1" MEL InChIKey InChI 1.03 DKWNMCUOEDMMIN-PKOBYXMFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MEL "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(1R)-2-{(2S)-2-[(4-carbamimidoylbenzyl)carbamoyl]azetidin-1-yl}-1-cyclohexyl-2-oxoethyl]glycine" MEL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[(1R)-2-[(2S)-2-[(4-carbamimidoylphenyl)methylcarbamoyl]azetidin-1-yl]-1-cyclohexyl-2-oxo-ethyl]amino]ethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MEL "Create component" 2001-10-23 RCSB MEL "Modify descriptor" 2011-06-04 RCSB MEL "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MEL _pdbx_chem_comp_synonyms.name "MELAGATRAN (ASTRA-ZENECA)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##