data_MER
#
_chem_comp.id MER
_chem_comp.name
;(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d
ihydro-1H-pyrrole-2-carboxylic acid
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H27 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Meropenem, bound form"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-02-17
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 385.478
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MER
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3Q82
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MER C1 C1 C 0 1 N N N N N N -3.736 -6.411 30.778 4.269 -0.424 1.227 C1 MER 1
MER C2 C2 C 0 1 N N N N N N -6.269 -9.290 32.289 0.932 0.227 0.367 C2 MER 2
MER C3 C3 C 0 1 N N S N N N -3.517 -7.359 31.925 4.158 -1.021 -0.152 C3 MER 3
MER C4 C4 C 0 1 N N S N N N -4.014 -8.795 31.608 2.896 -0.492 -0.837 C4 MER 4
MER C5 C5 C 0 1 N N N N N N -6.297 -8.651 31.125 1.651 1.306 0.004 C5 MER 5
MER O6 O6 O 0 1 N N N N N N -4.285 -5.366 31.011 4.432 -1.141 2.185 O6 MER 6
MER C7 C7 C 0 1 N N R N N N -2.101 -7.047 32.473 5.387 -0.632 -0.976 C7 MER 7
MER O8 O8 O 0 1 N N N N N N -1.237 -6.508 31.481 5.282 -1.198 -2.284 O8 MER 8
MER C9 C9 C 0 1 N N N N N N -1.387 -8.142 33.247 6.649 -1.161 -0.292 C9 MER 9
MER N10 N10 N 0 1 N N N N N N -5.121 -8.536 30.687 2.816 0.969 -0.704 N10 MER 10
MER C11 C11 C 0 1 N N N N N N -7.447 -8.077 30.395 1.273 2.636 0.304 C11 MER 11
MER O12 O12 O 0 1 N N N N N N -8.182 -7.178 30.912 2.101 3.658 -0.002 O12 MER 12
MER O13 O13 O 0 1 N N N N N N -7.646 -8.510 29.239 0.202 2.859 0.838 O13 MER 13
MER S14 S14 S 0 1 N N N N N N -7.594 -9.752 33.227 -0.586 0.259 1.260 S14 MER 14
MER C15 C15 C 0 1 N N S N N N -7.980 -11.480 33.311 -1.689 -0.484 0.033 C15 MER 15
MER C16 C16 C 0 1 N N N N N N -7.596 -12.205 32.020 -3.136 -0.580 0.582 C16 MER 16
MER C17 C17 C 0 1 N N S N N N -7.297 -13.638 32.484 -3.969 -0.564 -0.724 C17 MER 17
MER C18 C18 C 0 1 N N R N N N -4.849 -9.527 32.693 1.638 -1.017 -0.122 C18 MER 18
MER N19 N19 N 0 1 N N N N N N -6.804 -13.477 33.841 -3.254 0.374 -1.616 N19 MER 19
MER C20 C20 C 0 1 N N N N N N -4.738 -9.074 34.152 2.022 -1.913 1.058 C20 MER 20
MER C21 C21 C 0 1 N N N N N N -7.226 -12.216 34.433 -1.843 0.440 -1.193 C21 MER 21
MER C22 C22 C 0 1 N N N N N N -6.387 -14.379 31.533 -5.365 -0.067 -0.451 C22 MER 22
MER N23 N23 N 0 1 N N N N N N -6.870 -15.493 30.936 -6.286 -0.900 0.073 N23 MER 23
MER O24 O24 O 0 1 N N N N N N -5.262 -13.936 31.333 -5.660 1.082 -0.702 O24 MER 24
MER C25 C25 C 0 1 N N N N N N -6.084 -16.284 29.997 -5.930 -2.288 0.377 C25 MER 25
MER C26 C26 C 0 1 N N N N N N -8.211 -16.036 31.155 -7.643 -0.417 0.339 C26 MER 26
MER H1 H1 H 0 1 N N N N N N -3.411 -6.660 29.779 4.208 0.647 1.359 H1 MER 27
MER H3 H3 H 0 1 N N N N N N -4.197 -7.005 32.714 4.102 -2.106 -0.074 H3 MER 28
MER H4 H4 H 0 1 N N N N N N -3.222 -9.431 31.186 2.885 -0.781 -1.887 H4 MER 29
MER H7 H7 H 0 1 N N N N N N -2.259 -6.241 33.205 5.443 0.454 -1.054 H7 MER 30
MER HO8 HO8 H 0 1 N N N N N N -0.385 -6.334 31.863 5.227 -2.164 -2.292 HO8 MER 31
MER H9 H9 H 0 1 N N N N N N -0.400 -7.779 33.571 6.592 -2.246 -0.214 H9 MER 32
MER H9A H9A H 0 1 N N N N N N -1.984 -8.417 34.129 7.524 -0.883 -0.879 H9A MER 33
MER H9B H9B H 0 1 N N N N N N -1.259 -9.024 32.602 6.729 -0.729 0.706 H9B MER 34
MER HN10 HN10 H 0 0 N N N N N N -5.018 -7.598 30.355 3.464 1.601 -1.052 HN10 MER 35
MER HO12 HO12 H 0 0 N N N N N N -8.856 -6.924 30.292 1.757 4.528 0.240 HO12 MER 36
MER H15 H15 H 0 1 N N N N N N -9.064 -11.561 33.477 -1.322 -1.466 -0.268 H15 MER 37
MER H16 H16 H 0 1 N N N N N N -8.427 -12.191 31.300 -3.286 -1.511 1.129 H16 MER 38
MER H16A H16A H 0 0 N N N N N N -6.707 -11.747 31.562 -3.375 0.281 1.207 H16A MER 39
MER H17 H17 H 0 1 N N N N N N -8.254 -14.179 32.522 -3.999 -1.560 -1.166 H17 MER 40
MER H18 H18 H 0 1 N N N N N N -4.629 -10.603 32.637 1.006 -1.561 -0.824 H18 MER 41
MER HN19 HN19 H 0 0 N N N N N N -7.152 -14.228 34.401 -3.330 0.085 -2.579 HN19 MER 42
MER H20 H20 H 0 1 N N N N N N -3.708 -9.226 34.506 1.134 -2.424 1.430 H20 MER 43
MER H20A H20A H 0 0 N N N N N N -4.997 -8.008 34.225 2.755 -2.650 0.731 H20A MER 44
MER H20B H20B H 0 0 N N N N N N -5.429 -9.663 34.772 2.450 -1.302 1.853 H20B MER 45
MER H21 H21 H 0 1 N N N N N N -6.353 -11.632 34.760 -1.585 1.463 -0.921 H21 MER 46
MER H21A H21A H 0 0 N N N N N N -7.890 -12.395 35.292 -1.197 0.095 -2.001 H21A MER 47
MER H25 H25 H 0 1 N N N N N N -6.683 -17.137 29.644 -5.557 -2.352 1.399 H25 MER 48
MER H25A H25A H 0 0 N N N N N N -5.798 -15.657 29.139 -6.812 -2.921 0.272 H25A MER 49
MER H25B H25B H 0 0 N N N N N N -5.178 -16.655 30.499 -5.157 -2.625 -0.314 H25B MER 50
MER H26 H26 H 0 1 N N N N N N -8.343 -16.944 30.548 -8.265 -0.577 -0.541 H26 MER 51
MER H26A H26A H 0 0 N N N N N N -8.336 -16.285 32.219 -8.064 -0.961 1.185 H26A MER 52
MER H26B H26B H 0 0 N N N N N N -8.962 -15.287 30.863 -7.611 0.647 0.572 H26B MER 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MER C1 O6 DOUB N N 1
MER C1 C3 SING N N 2
MER C1 H1 SING N N 3
MER C5 C2 DOUB N N 4
MER C2 C18 SING N N 5
MER C2 S14 SING N N 6
MER C4 C3 SING N N 7
MER C3 C7 SING N N 8
MER C3 H3 SING N N 9
MER N10 C4 SING N N 10
MER C4 C18 SING N N 11
MER C4 H4 SING N N 12
MER C11 C5 SING N N 13
MER N10 C5 SING N N 14
MER O8 C7 SING N N 15
MER C7 C9 SING N N 16
MER C7 H7 SING N N 17
MER O8 HO8 SING N N 18
MER C9 H9 SING N N 19
MER C9 H9A SING N N 20
MER C9 H9B SING N N 21
MER N10 HN10 SING N N 22
MER O13 C11 DOUB N N 23
MER C11 O12 SING N N 24
MER O12 HO12 SING N N 25
MER S14 C15 SING N N 26
MER C16 C15 SING N N 27
MER C15 C21 SING N N 28
MER C15 H15 SING N N 29
MER C16 C17 SING N N 30
MER C16 H16 SING N N 31
MER C16 H16A SING N N 32
MER C22 C17 SING N N 33
MER C17 N19 SING N N 34
MER C17 H17 SING N N 35
MER C18 C20 SING N N 36
MER C18 H18 SING N N 37
MER N19 C21 SING N N 38
MER N19 HN19 SING N N 39
MER C20 H20 SING N N 40
MER C20 H20A SING N N 41
MER C20 H20B SING N N 42
MER C21 H21 SING N N 43
MER C21 H21A SING N N 44
MER N23 C22 SING N N 45
MER O24 C22 DOUB N N 46
MER C25 N23 SING N N 47
MER N23 C26 SING N N 48
MER C25 H25 SING N N 49
MER C25 H25A SING N N 50
MER C25 H25B SING N N 51
MER C26 H26 SING N N 52
MER C26 H26A SING N N 53
MER C26 H26B SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MER SMILES ACDLabs 12.01 "O=C(O)C2=C(SC1CC(C(=O)N(C)C)NC1)C(C(N2)C(C=O)C(O)C)C"
MER InChI InChI 1.03 "InChI=1S/C17H27N3O5S/c1-8-13(11(7-21)9(2)22)19-14(17(24)25)15(8)26-10-5-12(18-6-10)16(23)20(3)4/h7-13,18-19,22H,5-6H2,1-4H3,(H,24,25)/t8-,9-,10+,11-,12+,13-/m1/s1"
MER InChIKey InChI 1.03 DYQHXZPAIVAJRU-HTXLXMOSSA-N
MER SMILES_CANONICAL CACTVS 3.370 "C[C@@H](O)[C@@H](C=O)[C@@H]1NC(=C(S[C@@H]2CN[C@@H](C2)C(=O)N(C)C)[C@@H]1C)C(O)=O"
MER SMILES CACTVS 3.370 "C[CH](O)[CH](C=O)[CH]1NC(=C(S[CH]2CN[CH](C2)C(=O)N(C)C)[CH]1C)C(O)=O"
MER SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@@H](NC(=C1S[C@H]2C[C@H](NC2)C(=O)N(C)C)C(=O)O)[C@H](C=O)[C@@H](C)O"
MER SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(NC(=C1SC2CC(NC2)C(=O)N(C)C)C(=O)O)C(C=O)C(C)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MER "SYSTEMATIC NAME" ACDLabs 12.01 "(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid"
MER "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R)-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-3-methyl-2-[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2,3-dihydro-1H-pyrrole-5-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MER "Create component" 2001-02-17 EBI
MER "Modify descriptor" 2011-06-04 RCSB
MER "Other modification" 2012-05-04 RCSB
MER "Modify synonyms" 2020-06-05 PDBE
MER "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id MER
_pdbx_chem_comp_synonyms.name "Meropenem, bound form"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id MER
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#