data_MFO # _chem_comp.id MFO _chem_comp.name "[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(naphthalen-2-yl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C22 H23 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-04-06 _chem_comp.pdbx_modified_date 2019-05-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.427 _chem_comp.one_letter_code G _chem_comp.three_letter_code MFO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5G33 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MFO C6 C1 C 0 1 N N N 24.559 54.356 -28.776 0.394 -4.217 -0.064 C6 MFO 1 MFO C5 C2 C 0 1 Y N N 23.754 55.443 -29.363 0.655 -2.812 0.259 C5 MFO 2 MFO C4 C3 C 0 1 Y N N 22.979 56.302 -28.432 -0.253 -1.858 -0.182 C4 MFO 3 MFO C8 C4 C 0 1 Y N N 22.694 56.917 -30.440 1.379 -0.877 0.926 C8 MFO 4 MFO N4 N1 N 0 1 N N N 22.216 57.631 -31.501 2.167 0.102 1.520 N4 MFO 5 MFO C2 C5 C 0 1 N N N 23.825 55.025 -26.651 -1.543 -3.585 -1.168 C2 MFO 6 MFO C21 C6 C 0 1 Y N N 25.402 55.476 -34.447 6.541 -0.276 -0.538 C21 MFO 7 MFO C10 C7 C 0 1 N N N 19.901 58.267 -31.372 0.834 -0.184 3.584 C10 MFO 8 MFO C9 C8 C 0 1 N N N 21.358 58.631 -31.280 1.905 0.505 2.779 C9 MFO 9 MFO C12 C9 C 0 1 Y N N 22.614 57.252 -32.797 3.232 0.670 0.810 C12 MFO 10 MFO C20 C10 C 0 1 Y N N 25.801 55.076 -35.721 7.557 0.310 -1.228 C20 MFO 11 MFO N3 N2 N 0 1 N N N 23.058 56.042 -27.110 -1.349 -2.268 -0.896 N3 MFO 12 MFO C15 C11 C 0 1 Y N N 23.393 56.457 -35.352 5.325 1.835 -0.600 C15 MFO 13 MFO C14 C12 C 0 1 Y N N 22.197 57.145 -35.175 4.185 2.589 -0.272 C14 MFO 14 MFO C13 C13 C 0 1 Y N N 21.805 57.537 -33.897 3.166 2.012 0.418 C13 MFO 15 MFO N1 N3 N 0 1 N N N 24.544 54.211 -27.445 -0.707 -4.520 -0.768 N1 MFO 16 MFO C19 C14 C 0 1 Y N N 24.992 55.371 -36.815 7.483 1.647 -1.614 C19 MFO 17 MFO C18 C15 C 0 1 Y N N 23.792 56.059 -36.629 6.394 2.405 -1.312 C18 MFO 18 MFO N2 N4 N 0 1 N N N 23.858 54.823 -25.319 -2.651 -3.954 -1.884 N2 MFO 19 MFO C17 C16 C 0 1 Y N N 23.810 56.559 -32.982 4.331 -0.100 0.499 C17 MFO 20 MFO C16 C17 C 0 1 Y N N 24.202 56.165 -34.258 5.400 0.475 -0.207 C16 MFO 21 MFO P P1 P 0 1 N N N 23.995 60.717 -24.235 -6.232 1.201 0.267 P MFO 22 MFO OP1 O1 O 0 1 N Y N 24.019 62.141 -23.741 -6.870 2.197 -0.623 OP1 MFO 23 MFO "O5'" O2 O 0 1 N N N 22.888 60.505 -25.408 -4.639 1.432 0.276 "O5'" MFO 24 MFO "C5'" C18 C 0 1 N N N 21.872 59.491 -25.324 -3.848 1.451 -0.914 "C5'" MFO 25 MFO "C4'" C19 C 0 1 N N R 21.104 59.290 -26.636 -2.382 1.692 -0.548 "C4'" MFO 26 MFO "C3'" C20 C 0 1 N N S 20.311 57.993 -26.656 -1.521 1.803 -1.826 "C3'" MFO 27 MFO "O3'" O3 O 0 1 N N N 19.011 58.125 -26.081 -1.287 3.174 -2.155 "O3'" MFO 28 MFO "C2'" C21 C 0 1 N N N 20.217 57.621 -28.124 -0.196 1.104 -1.448 "C2'" MFO 29 MFO "C1'" C22 C 0 1 N N R 21.414 58.295 -28.756 -0.414 0.653 0.014 "C1'" MFO 30 MFO "O4'" O4 O 0 1 N N N 21.966 59.180 -27.771 -1.848 0.553 0.162 "O4'" MFO 31 MFO N9 N5 N 0 1 Y N N 22.341 57.211 -29.184 0.215 -0.650 0.245 N9 MFO 32 MFO N7 N6 N 0 1 Y N N 23.533 55.876 -30.619 1.636 -2.160 0.932 N7 MFO 33 MFO O6 O5 O 0 1 N N N 25.235 53.611 -29.522 1.164 -5.093 0.296 O6 MFO 34 MFO OP2 O6 O 0 1 N Y N 23.831 59.712 -23.123 -6.808 1.371 1.761 OP2 MFO 35 MFO O11 O7 O 0 1 N N N 21.736 59.761 -31.006 2.532 1.423 3.264 O11 MFO 36 MFO O1 O8 O 0 1 N Y N 25.377 60.437 -24.958 -6.556 -0.282 -0.268 O1 MFO 37 MFO H1 H1 H 0 1 N N N 26.028 55.251 -33.596 6.610 -1.315 -0.249 H1 MFO 38 MFO H2 H2 H 0 1 N N N 19.287 59.154 -31.159 0.321 -0.914 2.957 H2 MFO 39 MFO H3 H3 H 0 1 N N N 19.678 57.901 -32.385 1.288 -0.691 4.435 H3 MFO 40 MFO H4 H4 H 0 1 N N N 19.673 57.479 -30.639 0.116 0.554 3.941 H4 MFO 41 MFO H5 H5 H 0 1 N N N 26.730 54.542 -35.858 8.433 -0.269 -1.480 H5 MFO 42 MFO H6 H6 H 0 1 N N N 22.545 56.606 -26.463 -1.992 -1.613 -1.210 H6 MFO 43 MFO H7 H7 H 0 1 N N N 21.574 57.375 -36.027 4.119 3.626 -0.567 H7 MFO 44 MFO H8 H8 H 0 1 N N N 20.872 58.063 -33.757 2.293 2.597 0.667 H8 MFO 45 MFO H9 H9 H 0 1 N N N 25.293 55.068 -37.807 8.303 2.089 -2.161 H9 MFO 46 MFO H10 H10 H 0 1 N N N 23.167 56.285 -37.480 6.351 3.440 -1.618 H10 MFO 47 MFO H11 H11 H 0 1 N N N 24.409 54.080 -24.939 -3.279 -3.280 -2.187 H11 MFO 48 MFO H12 H12 H 0 1 N N N 23.331 55.416 -24.710 -2.807 -4.890 -2.088 H12 MFO 49 MFO H13 H13 H 0 1 N N N 24.434 56.327 -32.132 4.375 -1.135 0.805 H13 MFO 50 MFO H14 H14 H 0 1 N N N 21.155 59.779 -24.541 -3.942 0.495 -1.428 H14 MFO 51 MFO H15 H15 H 0 1 N N N 22.351 58.539 -25.051 -4.196 2.251 -1.568 H15 MFO 52 MFO H16 H16 H 0 1 N N N 20.410 60.133 -26.770 -2.285 2.595 0.054 H16 MFO 53 MFO H17 H17 H 0 1 N N N 20.883 57.217 -26.127 -2.003 1.288 -2.657 H17 MFO 54 MFO H18 H18 H 0 1 N N N 19.092 58.358 -25.164 -0.751 3.302 -2.949 H18 MFO 55 MFO H19 H19 H 0 1 N N N 19.281 57.997 -28.562 -0.022 0.242 -2.091 H19 MFO 56 MFO H20 H20 H 0 1 N N N 20.270 56.530 -28.254 0.637 1.803 -1.514 H20 MFO 57 MFO H21 H21 H 0 1 N N N 21.084 58.865 -29.637 -0.013 1.396 0.704 H21 MFO 58 MFO H22 H22 H 0 1 N N N 23.771 60.167 -22.291 -7.764 1.245 1.831 H22 MFO 59 MFO H23 H23 H 0 1 N N N 25.916 61.218 -24.924 -6.169 -0.988 0.269 H23 MFO 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MFO C19 C18 DOUB Y N 1 MFO C19 C20 SING Y N 2 MFO C18 C15 SING Y N 3 MFO C20 C21 DOUB Y N 4 MFO C15 C14 DOUB Y N 5 MFO C15 C16 SING Y N 6 MFO C14 C13 SING Y N 7 MFO C21 C16 SING Y N 8 MFO C16 C17 DOUB Y N 9 MFO C13 C12 DOUB Y N 10 MFO C17 C12 SING Y N 11 MFO C12 N4 SING N N 12 MFO N4 C9 SING N N 13 MFO N4 C8 SING N N 14 MFO C10 C9 SING N N 15 MFO C9 O11 DOUB N N 16 MFO N7 C8 DOUB Y N 17 MFO N7 C5 SING Y N 18 MFO C8 N9 SING Y N 19 MFO O6 C6 DOUB N N 20 MFO C5 C6 SING N N 21 MFO C5 C4 DOUB Y N 22 MFO N9 "C1'" SING N N 23 MFO N9 C4 SING Y N 24 MFO C6 N1 SING N N 25 MFO "C1'" "C2'" SING N N 26 MFO "C1'" "O4'" SING N N 27 MFO C4 N3 SING N N 28 MFO "C2'" "C3'" SING N N 29 MFO "O4'" "C4'" SING N N 30 MFO N1 C2 DOUB N N 31 MFO N3 C2 SING N N 32 MFO "C3'" "C4'" SING N N 33 MFO "C3'" "O3'" SING N N 34 MFO C2 N2 SING N N 35 MFO "C4'" "C5'" SING N N 36 MFO "O5'" "C5'" SING N N 37 MFO "O5'" P SING N N 38 MFO P OP1 DOUB N N 39 MFO P OP2 SING N N 40 MFO P O1 SING N N 41 MFO C21 H1 SING N N 42 MFO C10 H2 SING N N 43 MFO C10 H3 SING N N 44 MFO C10 H4 SING N N 45 MFO C20 H5 SING N N 46 MFO N3 H6 SING N N 47 MFO C14 H7 SING N N 48 MFO C13 H8 SING N N 49 MFO C19 H9 SING N N 50 MFO C18 H10 SING N N 51 MFO N2 H11 SING N N 52 MFO N2 H12 SING N N 53 MFO C17 H13 SING N N 54 MFO "C5'" H14 SING N N 55 MFO "C5'" H15 SING N N 56 MFO "C4'" H16 SING N N 57 MFO "C3'" H17 SING N N 58 MFO "O3'" H18 SING N N 59 MFO "C2'" H19 SING N N 60 MFO "C2'" H20 SING N N 61 MFO "C1'" H21 SING N N 62 MFO OP2 H22 SING N N 63 MFO O1 H23 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MFO InChI InChI 1.03 "InChI=1S/C22H23N6O8P/c1-11(29)27(14-7-6-12-4-2-3-5-13(12)8-14)22-24-18-19(25-21(23)26-20(18)31)28(22)17-9-15(30)16(36-17)10-35-37(32,33)34/h2-8,15-17,30H,9-10H2,1H3,(H2,32,33,34)(H3,23,25,26,31)/t15-,16+,17+/m0/s1" MFO InChIKey InChI 1.03 AEEKNUIQRYLODW-GVDBMIGSSA-N MFO SMILES_CANONICAL CACTVS 3.385 "CC(=O)N(c1ccc2ccccc2c1)c3nc4C(=O)N=C(N)Nc4n3[C@H]5C[C@H](O)[C@@H](CO[P](O)(O)=O)O5" MFO SMILES CACTVS 3.385 "CC(=O)N(c1ccc2ccccc2c1)c3nc4C(=O)N=C(N)Nc4n3[CH]5C[CH](O)[CH](CO[P](O)(O)=O)O5" MFO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(=O)N(c1ccc2ccccc2c1)c3nc4c(n3[C@H]5C[C@@H]([C@H](O5)COP(=O)(O)O)O)NC(=NC4=O)N" MFO SMILES "OpenEye OEToolkits" 2.0.5 "CC(=O)N(c1ccc2ccccc2c1)c3nc4c(n3C5CC(C(O5)COP(=O)(O)O)O)NC(=NC4=O)N" # _pdbx_chem_comp_identifier.comp_id MFO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.5 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(naphthalen-2-yl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MFO "Create component" 2016-04-06 EBI MFO "Other modification" 2016-04-21 EBI MFO "Other modification" 2016-04-22 EBI MFO "Initial release" 2016-06-01 RCSB MFO "Other modification" 2016-06-02 RCSB MFO "Modify one letter code" 2019-05-07 EBI ##