data_MGM
#
_chem_comp.id MGM
_chem_comp.name "2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H37 N O7 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "3-AZAGERANYLGERANYL DIPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-11-20
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 453.447
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MGM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1N4Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MGM C20 C20 C 0 1 N N N 34.937 83.813 65.253 -2.682 1.595 -10.824 C20 MGM 1
MGM C19 C19 C 0 1 N N N 35.392 85.013 67.420 -2.331 2.227 -8.316 C19 MGM 2
MGM C18 C18 C 0 1 N N N 35.510 85.024 65.918 -1.915 1.445 -9.535 C18 MGM 3
MGM C17 C17 C 0 1 N N N 36.063 86.007 65.209 -0.886 0.636 -9.476 C17 MGM 4
MGM C16 C16 C 0 1 N N N 36.687 87.256 65.754 -0.238 0.339 -8.148 C16 MGM 5
MGM C14 C14 C 0 1 N N N 35.403 88.333 62.776 2.061 -1.565 -6.553 C14 MGM 6
MGM C13 C13 C 0 1 N N N 35.928 88.923 64.073 0.560 -1.471 -6.654 C13 MGM 7
MGM C15 C15 C 0 1 N N N 37.130 88.173 64.641 -0.088 -1.174 -7.981 C15 MGM 8
MGM C12 C12 C 0 1 N N N 35.372 90.010 64.690 -0.179 -1.647 -5.588 C12 MGM 9
MGM C11 C11 C 0 1 N N N 34.165 90.770 64.180 0.468 -1.777 -4.234 C11 MGM 10
MGM C9 C9 C 0 1 N N N 33.771 91.952 65.069 -0.193 -0.803 -3.257 C9 MGM 11
MGM C8 C8 C 0 1 N N N 32.548 92.705 64.597 0.454 -0.932 -1.902 C8 MGM 12
MGM C10 C10 C 0 1 N N N 31.459 92.753 65.647 -0.089 -1.915 -0.897 C10 MGM 13
MGM C7 C7 C 0 1 N N N 32.435 93.272 63.358 1.490 -0.190 -1.598 C7 MGM 14
MGM C6 C6 C 0 1 N N N 31.213 94.025 62.850 2.259 -0.454 -0.329 C6 MGM 15
MGM C5 C5 C 0 1 N N N 30.307 93.127 61.984 2.137 0.754 0.601 C5 MGM 16
MGM N3 N3 N 0 1 N N N 29.159 93.799 61.356 2.886 0.497 1.838 N3 MGM 17
MGM C4 C4 C 0 1 N N N 27.871 93.317 61.867 4.305 0.429 1.465 C4 MGM 18
MGM C2 C2 C 0 1 N N N 29.332 94.837 60.311 2.728 1.689 2.682 C2 MGM 19
MGM C1 C1 C 0 1 N N N 28.274 95.634 59.545 1.367 1.645 3.378 C1 MGM 20
MGM O1 O1 O 0 1 N N N 26.940 95.237 59.834 1.319 0.522 4.260 O1 MGM 21
MGM PA PA P 0 1 N N S 26.003 96.221 60.699 -0.132 0.537 4.955 PA MGM 22
MGM O1A O1A O 0 1 N N N 25.878 97.581 60.070 -0.323 1.912 5.770 O1A MGM 23
MGM O3A O3A O 0 1 N N N 26.631 96.265 62.189 -0.255 -0.708 5.968 O3A MGM 24
MGM O2A O2A O 0 1 N N N 24.631 95.495 60.840 -1.178 0.431 3.914 O2A MGM 25
MGM PB PB P 0 1 N N N 26.192 97.006 63.529 -1.723 -0.631 6.624 PB MGM 26
MGM O1B O1B O 0 1 N N N 24.939 97.804 63.362 -1.916 -1.854 7.653 O1B MGM 27
MGM O2B O2B O 0 1 N N N 27.398 97.879 63.936 -1.888 0.763 7.411 O2B MGM 28
MGM O3B O3B O 0 1 N N N 26.034 95.876 64.567 -2.745 -0.719 5.557 O3B MGM 29
MGM H201 1H20 H 0 0 N N N 35.024 83.821 64.141 -3.497 2.305 -10.681 H201 MGM 30
MGM H202 2H20 H 0 0 N N N 35.388 82.884 65.674 -2.014 1.960 -11.604 H202 MGM 31
MGM H203 3H20 H 0 0 N N N 33.876 83.662 65.561 -3.090 0.628 -11.118 H203 MGM 32
MGM H191 1H19 H 0 0 N N N 35.819 85.915 67.915 -1.618 2.049 -7.510 H191 MGM 33
MGM H192 2H19 H 0 0 N N N 34.331 84.862 67.728 -2.352 3.290 -8.555 H192 MGM 34
MGM H193 3H19 H 0 0 N N N 35.843 84.084 67.841 -3.323 1.906 -8.000 H193 MGM 35
MGM H17 H17 H 0 1 N N N 36.002 85.778 64.131 -0.503 0.182 -10.377 H17 MGM 36
MGM H161 1H16 H 0 0 N N N 36.007 87.776 66.468 -0.858 0.733 -7.344 H161 MGM 37
MGM H162 2H16 H 0 0 N N N 37.524 87.025 66.453 0.745 0.808 -8.111 H162 MGM 38
MGM H141 1H14 H 0 0 N N N 34.525 88.880 62.361 2.338 -1.890 -5.550 H141 MGM 39
MGM H142 2H14 H 0 0 N N N 36.217 88.260 62.017 2.430 -2.285 -7.284 H142 MGM 40
MGM H143 3H14 H 0 0 N N N 35.169 87.250 62.901 2.501 -0.587 -6.752 H143 MGM 41
MGM H151 1H15 H 0 0 N N N 37.939 88.866 64.968 0.533 -1.568 -8.786 H151 MGM 42
MGM H152 2H15 H 0 0 N N N 37.694 87.627 63.849 -1.071 -1.642 -8.018 H152 MGM 43
MGM H12 H12 H 0 1 N N N 35.907 90.278 65.616 -1.254 -1.700 -5.680 H12 MGM 44
MGM H111 1H11 H 0 0 N N N 34.322 91.102 63.127 1.530 -1.544 -4.315 H111 MGM 45
MGM H112 2H11 H 0 0 N N N 33.299 90.083 64.029 0.346 -2.797 -3.868 H112 MGM 46
MGM HC91 1HC9 H 0 0 N N N 33.639 91.618 66.124 -1.255 -1.035 -3.175 HC91 MGM 47
MGM HC92 2HC9 H 0 0 N N N 34.632 92.648 65.195 -0.071 0.216 -3.622 HC92 MGM 48
MGM H101 1H10 H 0 0 N N N 30.557 93.308 65.298 0.429 -1.788 0.052 H101 MGM 49
MGM H102 2H10 H 0 0 N N N 31.190 91.728 65.994 -1.155 -1.737 -0.756 H102 MGM 50
MGM H103 3H10 H 0 0 N N N 31.843 93.172 66.606 0.063 -2.930 -1.263 H103 MGM 51
MGM HC7 HC7 H 0 1 N N N 33.347 93.119 62.756 1.793 0.609 -2.257 HC7 MGM 52
MGM HC61 1HC6 H 0 0 N N N 30.643 94.487 63.689 3.308 -0.623 -0.568 HC61 MGM 53
MGM HC62 2HC6 H 0 0 N N N 31.505 94.952 62.305 1.852 -1.336 0.165 HC62 MGM 54
MGM HC51 1HC5 H 0 0 N N N 30.915 92.607 61.207 1.087 0.923 0.840 HC51 MGM 55
MGM HC52 2HC5 H 0 0 N N N 29.956 92.251 62.579 2.543 1.636 0.106 HC52 MGM 56
MGM HC41 1HC4 H 0 0 N N N 27.000 93.826 61.391 4.495 -0.500 0.928 HC41 MGM 57
MGM HC42 2HC4 H 0 0 N N N 27.790 92.209 61.766 4.554 1.275 0.825 HC42 MGM 58
MGM HC43 3HC4 H 0 0 N N N 27.824 93.401 62.977 4.919 0.461 2.365 HC43 MGM 59
MGM HC21 1HC2 H 0 0 N N N 30.001 95.602 60.767 3.519 1.711 3.431 HC21 MGM 60
MGM HC22 2HC2 H 0 0 N N N 29.964 94.359 59.526 2.790 2.584 2.062 HC22 MGM 61
MGM HC11 1HC1 H 0 0 N N N 28.404 96.728 59.716 1.220 2.562 3.949 HC11 MGM 62
MGM HC12 2HC1 H 0 0 N N N 28.468 95.592 58.447 0.579 1.553 2.630 HC12 MGM 63
MGM H1AO OH1A H 0 0 N N N 25.325 98.161 60.580 0.376 1.941 6.437 H1AO MGM 64
MGM H1BO OH1B H 0 0 N N N 24.677 98.245 64.161 -2.806 -1.771 8.022 H1BO MGM 65
MGM H2BO OH2B H 0 0 N N N 27.136 98.320 64.735 -1.205 0.780 8.095 H2BO MGM 66
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MGM C20 C18 SING N N 1
MGM C20 H201 SING N N 2
MGM C20 H202 SING N N 3
MGM C20 H203 SING N N 4
MGM C19 C18 SING N N 5
MGM C19 H191 SING N N 6
MGM C19 H192 SING N N 7
MGM C19 H193 SING N N 8
MGM C18 C17 DOUB N N 9
MGM C17 C16 SING N N 10
MGM C17 H17 SING N N 11
MGM C16 C15 SING N N 12
MGM C16 H161 SING N N 13
MGM C16 H162 SING N N 14
MGM C14 C13 SING N N 15
MGM C14 H141 SING N N 16
MGM C14 H142 SING N N 17
MGM C14 H143 SING N N 18
MGM C13 C15 SING N N 19
MGM C13 C12 DOUB N E 20
MGM C15 H151 SING N N 21
MGM C15 H152 SING N N 22
MGM C12 C11 SING N N 23
MGM C12 H12 SING N N 24
MGM C11 C9 SING N N 25
MGM C11 H111 SING N N 26
MGM C11 H112 SING N N 27
MGM C9 C8 SING N N 28
MGM C9 HC91 SING N N 29
MGM C9 HC92 SING N N 30
MGM C8 C10 SING N N 31
MGM C8 C7 DOUB N E 32
MGM C10 H101 SING N N 33
MGM C10 H102 SING N N 34
MGM C10 H103 SING N N 35
MGM C7 C6 SING N N 36
MGM C7 HC7 SING N N 37
MGM C6 C5 SING N N 38
MGM C6 HC61 SING N N 39
MGM C6 HC62 SING N N 40
MGM C5 N3 SING N N 41
MGM C5 HC51 SING N N 42
MGM C5 HC52 SING N N 43
MGM N3 C4 SING N N 44
MGM N3 C2 SING N N 45
MGM C4 HC41 SING N N 46
MGM C4 HC42 SING N N 47
MGM C4 HC43 SING N N 48
MGM C2 C1 SING N N 49
MGM C2 HC21 SING N N 50
MGM C2 HC22 SING N N 51
MGM C1 O1 SING N N 52
MGM C1 HC11 SING N N 53
MGM C1 HC12 SING N N 54
MGM O1 PA SING N N 55
MGM PA O1A SING N N 56
MGM PA O3A SING N N 57
MGM PA O2A DOUB N N 58
MGM O1A H1AO SING N N 59
MGM O3A PB SING N N 60
MGM PB O1B SING N N 61
MGM PB O2B SING N N 62
MGM PB O3B DOUB N N 63
MGM O1B H1BO SING N N 64
MGM O2B H2BO SING N N 65
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MGM SMILES ACDLabs 10.04 "O=P(OP(=O)(OCCN(C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)C)O)(O)O"
MGM SMILES_CANONICAL CACTVS 3.341 "CN(CCO[P@@](O)(=O)O[P](O)(O)=O)CC/C=C(C)/CC\C=C(/C)CCC=C(C)C"
MGM SMILES CACTVS 3.341 "CN(CCO[P](O)(=O)O[P](O)(O)=O)CCC=C(C)CCC=C(C)CCC=C(C)C"
MGM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=CCC/C(=C/CC/C(=C/CCN(C)CCO[P@](=O)(O)OP(=O)(O)O)/C)/C)C"
MGM SMILES "OpenEye OEToolkits" 1.5.0 "CC(=CCCC(=CCCC(=CCCN(C)CCOP(=O)(O)OP(=O)(O)O)C)C)C"
MGM InChI InChI 1.03 "InChI=1S/C19H37NO7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13H,6-8,10,12,14-16H2,1-5H3,(H,24,25)(H2,21,22,23)/b18-11+,19-13+"
MGM InChIKey InChI 1.03 OEMBPHBKZPOPBN-NWLVNBMCSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MGM "SYSTEMATIC NAME" ACDLabs 10.04 "2-{methyl[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trien-1-yl]amino}ethyl trihydrogen diphosphate"
MGM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[methyl-[(3E,7E)-4,8,12-trimethyltrideca-3,7,11-trienyl]amino]ethyl phosphono hydrogen phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MGM "Create component" 2002-11-20 RCSB
MGM "Modify descriptor" 2011-06-04 RCSB
MGM "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id MGM
_pdbx_chem_comp_synonyms.name "3-AZAGERANYLGERANYL DIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##