data_MGO # _chem_comp.id MGO _chem_comp.name "[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N4 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2007-08-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 537.227 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MGO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2V8W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MGO OAJ OAJ O 0 1 N N N 39.360 13.840 56.203 39.360 13.840 56.203 OAJ MGO 1 MGO PBE PBE P 0 1 N N N 39.809 12.621 57.209 39.809 12.621 57.209 PBE MGO 2 MGO OAD OAD O 0 1 N N N 41.013 13.333 58.094 41.013 13.333 58.094 OAD MGO 3 MGO OAI OAI O 0 1 N N N 40.204 11.381 56.451 40.204 11.381 56.451 OAI MGO 4 MGO OAS OAS O 0 1 N N N 38.550 12.313 58.241 38.550 12.313 58.241 OAS MGO 5 MGO PBG PBG P 0 1 N N S 37.334 13.331 58.492 37.334 13.331 58.492 PBG MGO 6 MGO OAL OAL O 0 1 N N N 36.709 12.706 59.842 36.709 12.706 59.842 OAL MGO 7 MGO OAF OAF O 0 1 N N N 37.742 14.749 58.586 37.742 14.749 58.586 OAF MGO 8 MGO OAT OAT O 0 1 N N N 36.328 13.159 57.302 36.328 13.159 57.302 OAT MGO 9 MGO PBF PBF P 0 1 N N S 35.220 12.025 57.225 35.220 12.025 57.225 PBF MGO 10 MGO OAK OAK O 0 1 N N N 34.478 12.421 55.821 34.478 12.421 55.821 OAK MGO 11 MGO OAE OAE O 0 1 N N N 34.308 12.067 58.400 34.308 12.067 58.400 OAE MGO 12 MGO "O5'" O5* O 0 1 N N N 35.955 10.598 57.058 35.955 10.598 57.058 "O5'" MGO 13 MGO "C5'" C5* C 0 1 N N N 36.412 9.839 58.174 36.412 9.839 58.174 "C5'" MGO 14 MGO "C4'" C4* C 0 1 N N R 36.057 8.371 58.092 36.057 8.371 58.092 "C4'" MGO 15 MGO "O4'" O4* O 0 1 N N N 34.635 8.287 58.311 34.635 8.287 58.311 "O4'" MGO 16 MGO "C3'" C3* C 0 1 N N S 36.225 7.767 56.695 36.225 7.767 56.695 "C3'" MGO 17 MGO "O3'" O3* O 0 1 N N N 37.545 7.345 56.512 37.545 7.345 56.512 "O3'" MGO 18 MGO "C2'" C2* C 0 1 N N R 35.315 6.568 56.806 35.315 6.568 56.806 "C2'" MGO 19 MGO "O2'" O2* O 0 1 N N N 35.803 5.658 57.775 35.803 5.658 57.775 "O2'" MGO 20 MGO "C1'" C1* C 0 1 N N R 34.093 7.234 57.417 34.093 7.234 57.417 "C1'" MGO 21 MGO NBC NBC N 0 1 Y N N 33.142 7.757 56.356 33.142 7.757 56.356 NBC MGO 22 MGO CAN CAN C 0 1 Y N N 32.921 9.049 56.002 32.921 9.049 56.002 CAN MGO 23 MGO NBD NBD N 1 1 Y N N 31.971 9.057 55.042 31.971 9.057 55.042 NBD MGO 24 MGO CAA CAA C 0 1 N N N 31.461 10.276 54.384 31.461 10.276 54.384 CAA MGO 25 MGO CAX CAX C 0 1 Y N N 31.581 7.795 54.768 31.581 7.795 54.768 CAX MGO 26 MGO CAW CAW C 0 1 Y N N 32.341 6.972 55.616 32.341 6.972 55.616 CAW MGO 27 MGO CAM CAM C 0 1 N N N 32.199 5.589 55.602 32.199 5.589 55.602 CAM MGO 28 MGO CAU CAU C 0 1 N N N 31.298 5.014 54.728 31.298 5.014 54.728 CAU MGO 29 MGO NAB NAB N 0 1 N N N 31.178 3.689 54.713 31.178 3.689 54.713 NAB MGO 30 MGO NAP NAP N 0 1 N N N 30.532 5.814 53.853 30.532 5.814 53.853 NAP MGO 31 MGO CAV CAV C 0 1 N N N 30.675 7.206 53.862 30.675 7.206 53.862 CAV MGO 32 MGO OAC OAC O 0 1 N N N 29.987 7.866 53.090 29.987 7.866 53.090 OAC MGO 33 MGO HAJ HAJ H 0 1 N N N 39.273 14.645 56.700 39.273 14.645 56.700 HAJ MGO 34 MGO HAD HAD H 0 1 N N N 41.774 13.469 57.542 41.774 13.469 57.542 HAD MGO 35 MGO HAL HAL H 0 1 N N N 36.586 11.771 59.731 36.586 11.771 59.731 HAL MGO 36 MGO HAK HAK H 0 1 N N N 33.542 12.498 55.967 33.542 12.498 55.967 HAK MGO 37 MGO H51 1H5* H 0 1 N N N 37.508 9.924 58.221 37.508 9.924 58.221 H51 MGO 38 MGO H52 2H5* H 0 1 N N N 35.916 10.244 59.068 35.916 10.244 59.068 H52 MGO 39 MGO H4 H4* H 0 1 N N N 36.708 7.846 58.807 36.708 7.846 58.807 H4 MGO 40 MGO H3 H3* H 0 1 N N N 36.000 8.450 55.863 36.000 8.450 55.863 H3 MGO 41 MGO H1 H1* H 0 1 N N N 33.472 6.528 57.988 33.472 6.529 57.988 H1 MGO 42 MGO HA HA H 0 1 N N N 37.721 7.249 55.583 37.722 7.249 55.583 HA MGO 43 MGO H2 H2* H 0 1 N N N 35.181 6.018 55.863 35.181 6.018 55.863 H2 MGO 44 MGO HB HB H 0 1 N N N 35.912 4.801 57.379 35.912 4.801 57.379 HB MGO 45 MGO HAN HAN H 0 1 N N N 33.416 9.916 56.414 33.416 9.916 56.414 HAN MGO 46 MGO HAA1 1HAA H 0 0 N N N 31.334 11.072 55.133 31.334 11.072 55.133 HAA1 MGO 47 MGO HAA2 2HAA H 0 0 N N N 32.177 10.605 53.617 32.177 10.605 53.617 HAA2 MGO 48 MGO HAA3 3HAA H 0 0 N N N 30.491 10.059 53.912 30.491 10.059 53.912 HAA3 MGO 49 MGO HAM HAM H 0 1 N N N 32.786 4.972 56.266 32.786 4.972 56.266 HAM MGO 50 MGO HAB1 1HAB H 0 0 N N N 31.148 3.367 53.767 31.148 3.367 53.767 HAB1 MGO 51 MGO HAB2 2HAB H 0 0 N N N 31.961 3.278 55.180 31.961 3.278 55.180 HAB2 MGO 52 MGO HAP HAP H 0 1 N N N 29.884 5.384 53.224 29.884 5.384 53.224 HAP MGO 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MGO OAJ PBE SING N N 1 MGO PBE OAD SING N N 2 MGO PBE OAI DOUB N N 3 MGO PBE OAS SING N N 4 MGO OAS PBG SING N N 5 MGO PBG OAL SING N N 6 MGO PBG OAF DOUB N N 7 MGO PBG OAT SING N N 8 MGO OAT PBF SING N N 9 MGO PBF OAK SING N N 10 MGO PBF OAE DOUB N N 11 MGO PBF "O5'" SING N N 12 MGO "O5'" "C5'" SING N N 13 MGO "C5'" "C4'" SING N N 14 MGO "C4'" "O4'" SING N N 15 MGO "C4'" "C3'" SING N N 16 MGO "O4'" "C1'" SING N N 17 MGO "C3'" "O3'" SING N N 18 MGO "C3'" "C2'" SING N N 19 MGO "C2'" "O2'" SING N N 20 MGO "C2'" "C1'" SING N N 21 MGO "C1'" NBC SING N N 22 MGO NBC CAN SING Y N 23 MGO NBC CAW SING Y N 24 MGO CAN NBD DOUB Y N 25 MGO NBD CAA SING N N 26 MGO NBD CAX SING Y N 27 MGO CAX CAW DOUB Y N 28 MGO CAX CAV SING N N 29 MGO CAW CAM SING N N 30 MGO CAM CAU DOUB N N 31 MGO CAU NAB SING N N 32 MGO CAU NAP SING N N 33 MGO NAP CAV SING N N 34 MGO CAV OAC DOUB N N 35 MGO OAJ HAJ SING N N 36 MGO OAD HAD SING N N 37 MGO OAL HAL SING N N 38 MGO OAK HAK SING N N 39 MGO "C5'" H51 SING N N 40 MGO "C5'" H52 SING N N 41 MGO "C4'" H4 SING N N 42 MGO "C3'" H3 SING N N 43 MGO "C1'" H1 SING N N 44 MGO "O3'" HA SING N N 45 MGO "C2'" H2 SING N N 46 MGO "O2'" HB SING N N 47 MGO CAN HAN SING N N 48 MGO CAA HAA1 SING N N 49 MGO CAA HAA2 SING N N 50 MGO CAA HAA3 SING N N 51 MGO CAM HAM SING N N 52 MGO NAB HAB1 SING N N 53 MGO NAB HAB2 SING N N 54 MGO NAP HAP SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MGO SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n1c[n+](c2c1C=C(N)NC2=O)C)C(O)C3O" MGO SMILES_CANONICAL CACTVS 3.341 "C[n+]1cn([C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O)c3C=C(N)NC(=O)c13" MGO SMILES CACTVS 3.341 "C[n+]1cn([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)c3C=C(N)NC(=O)c13" MGO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[n+]1cn(c2c1C(=O)NC(=C2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)O" MGO SMILES "OpenEye OEToolkits" 1.5.0 "C[n+]1cn(c2c1C(=O)NC(=C2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" MGO InChI InChI 1.03 "InChI=1S/C12H19N4O14P3/c1-15-4-16(5-2-7(13)14-11(19)8(5)15)12-10(18)9(17)6(28-12)3-27-32(23,24)30-33(25,26)29-31(20,21)22/h2,4,6,9-10,12,17-18H,3H2,1H3,(H6-,13,14,19,20,21,22,23,24,25,26)/p+1/t6-,9-,10-,12-/m1/s1" MGO InChIKey InChI 1.03 LPHBJZOLBGBNJF-XYHAGOFUSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MGO "SYSTEMATIC NAME" ACDLabs 10.04 "6-amino-1-{5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-3-methyl-4-oxo-4,5-dihydro-1H-imidazo[4,5-c]pyridin-3-ium" MGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-amino-3-methyl-4-oxo-5H-imidazo[4,5-c]pyridin-3-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MGO "Create component" 2007-08-16 RCSB MGO "Modify aromatic_flag" 2011-06-04 RCSB MGO "Modify descriptor" 2011-06-04 RCSB #