data_MGV # _chem_comp.id MGV _chem_comp.name "P-FLUORO-7-BENZYL GUANINE MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C17 H20 F N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2007-08-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.342 _chem_comp.one_letter_code G _chem_comp.three_letter_code MGV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2V8Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MGV CAK CAK C 0 1 Y N N 17.083 5.823 19.062 2.181 -3.136 -0.829 CAK MGV 1 MGV CAI CAI C 0 1 Y N N 16.811 6.289 20.340 2.549 -4.193 -0.018 CAI MGV 2 MGV CAU CAU C 0 1 Y N N 17.850 6.790 21.115 3.802 -4.210 0.571 CAU MGV 3 MGV FAH FAH F 0 1 N N N 17.598 7.240 22.350 4.162 -5.243 1.364 FAH MGV 4 MGV CAJ CAJ C 0 1 Y N N 19.155 6.811 20.658 4.685 -3.167 0.347 CAJ MGV 5 MGV CAL CAL C 0 1 Y N N 19.451 6.335 19.398 4.315 -2.112 -0.465 CAL MGV 6 MGV CAV CAV C 0 1 Y N N 18.400 5.856 18.624 3.064 -2.096 -1.053 CAV MGV 7 MGV CAO CAO C 0 1 N N N 18.722 5.370 17.272 2.662 -0.944 -1.938 CAO MGV 8 MGV N7 N7 N 1 1 Y N N 18.682 3.912 17.150 2.025 0.095 -1.126 N7 MGV 9 MGV C8 C8 C 0 1 Y N N 17.578 3.228 16.849 0.743 0.229 -0.946 C8 MGV 10 MGV C5 C5 C 0 1 Y N N 19.739 3.114 17.204 2.678 1.066 -0.441 C5 MGV 11 MGV C6 C6 C 0 1 N N N 21.106 3.286 17.460 4.041 1.404 -0.270 C6 MGV 12 MGV O6 O6 O 0 1 N N N 21.640 4.375 17.690 4.918 0.751 -0.808 O6 MGV 13 MGV N1 N1 N 0 1 N N N 21.904 2.153 17.454 4.345 2.468 0.505 N1 MGV 14 MGV C2 C2 C 0 1 N N N 21.353 0.902 17.189 3.355 3.191 1.102 C2 MGV 15 MGV N2 N2 N 0 1 N N N 22.157 -0.155 17.191 3.695 4.267 1.883 N2 MGV 16 MGV N3 N3 N 0 1 N N N 20.050 0.759 16.945 2.086 2.887 0.950 N3 MGV 17 MGV C4 C4 C 0 1 Y N N 19.244 1.837 16.958 1.708 1.847 0.198 C4 MGV 18 MGV N9 N9 N 0 1 Y N N 17.929 1.943 16.738 0.499 1.300 -0.136 N9 MGV 19 MGV "C1'" "C1'" C 0 1 N N R 17.018 0.758 16.457 -0.817 1.774 0.300 "C1'" MGV 20 MGV "O4'" "O4'" O 0 1 N N N 15.743 1.197 16.023 -1.783 0.702 0.241 "O4'" MGV 21 MGV "C2'" "C2'" C 0 1 N N R 16.779 -0.002 17.766 -1.353 2.844 -0.677 "C2'" MGV 22 MGV "O2'" "O2'" O 0 1 N N N 16.455 -1.355 17.505 -1.112 4.156 -0.166 "O2'" MGV 23 MGV "C3'" "C3'" C 0 1 N N S 15.560 0.731 18.314 -2.870 2.560 -0.748 "C3'" MGV 24 MGV "O3'" "O3'" O 0 1 N N N 14.912 -0.039 19.362 -3.613 3.689 -0.282 "O3'" MGV 25 MGV "C4'" "C4'" C 0 1 N N R 14.742 0.841 17.027 -3.071 1.354 0.196 "C4'" MGV 26 MGV "C5'" "C5'" C 0 1 N N N 13.719 2.008 16.922 -4.128 0.404 -0.372 "C5'" MGV 27 MGV "O5'" "O5'" O 0 1 N N N 14.316 3.252 17.295 -4.329 -0.682 0.535 "O5'" MGV 28 MGV P P P 0 1 N N N 13.746 4.711 16.741 -5.375 -1.874 0.257 P MGV 29 MGV OP3 OP3 O 0 1 N Y N 13.114 5.446 18.008 -5.244 -2.983 1.417 OP3 MGV 30 MGV OP2 OP2 O 0 1 N N N 15.089 5.493 16.359 -6.872 -1.283 0.246 OP2 MGV 31 MGV OP1 OP1 O 0 1 N N N 12.763 4.533 15.648 -5.079 -2.494 -1.054 OP1 MGV 32 MGV HAK HAK H 0 1 N N N 16.295 5.446 18.427 1.206 -3.125 -1.293 HAK MGV 33 MGV HAI HAI H 0 1 N N N 15.803 6.263 20.728 1.859 -5.005 0.156 HAI MGV 34 MGV HAJ HAJ H 0 1 N N N 19.942 7.200 21.287 5.663 -3.179 0.806 HAJ MGV 35 MGV HAL HAL H 0 1 N N N 20.465 6.334 19.025 5.004 -1.298 -0.640 HAL MGV 36 MGV HAO1 HAO1 H 0 0 N N N 17.986 5.793 16.572 3.547 -0.534 -2.424 HAO1 MGV 37 MGV HAO2 HAO2 H 0 0 N N N 19.751 5.687 17.049 1.961 -1.295 -2.695 HAO2 MGV 38 MGV H8 H8 H 0 1 N N N 16.586 3.636 16.719 -0.014 -0.412 -1.373 H8 MGV 39 MGV H1 H1 H 0 1 N N N 22.883 2.234 17.641 5.273 2.719 0.637 H1 MGV 40 MGV H2N1 H2N1 H 0 0 N N N 21.627 -0.978 16.987 4.628 4.503 2.004 H2N1 MGV 41 MGV H2N2 H2N2 H 0 0 N N N 23.141 -0.131 17.369 3.001 4.791 2.315 H2N2 MGV 42 MGV "H1'" "H1'" H 0 1 N N N 17.498 0.135 15.688 -0.758 2.177 1.311 "H1'" MGV 43 MGV "H2'" "H2'" H 0 1 N N N 17.647 -0.023 18.441 -0.895 2.727 -1.660 "H2'" MGV 44 MGV "H4'" "H4'" H 0 1 N N N 14.171 -0.095 16.938 -3.360 1.693 1.190 "H4'" MGV 45 MGV HA HA H 0 1 N N N 16.382 -1.488 16.567 -1.429 4.866 -0.740 HA MGV 46 MGV "H3'" "H3'" H 0 1 N N N 15.746 1.696 18.807 -3.164 2.305 -1.766 "H3'" MGV 47 MGV "HO3'" "HO3'" H 0 0 N Y N 14.771 -0.929 19.061 -3.476 4.492 -0.803 "HO3'" MGV 48 MGV "H5'1" H51 H 0 0 N N N 13.365 2.080 15.883 -5.066 0.943 -0.507 "H5'1" MGV 49 MGV "H5'2" H52 H 0 0 N N N 12.882 1.802 17.606 -3.790 0.017 -1.333 "H5'2" MGV 50 MGV HOP3 HOP3 H 0 0 N N N 12.988 4.817 18.709 -5.846 -3.733 1.314 HOP3 MGV 51 MGV HOP2 HOP2 H 0 0 N N N 15.110 5.648 15.422 -7.135 -0.861 1.075 HOP2 MGV 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MGV CAK CAI SING Y N 1 MGV CAK CAV DOUB Y N 2 MGV CAI CAU DOUB Y N 3 MGV CAU FAH SING N N 4 MGV CAU CAJ SING Y N 5 MGV CAJ CAL DOUB Y N 6 MGV CAL CAV SING Y N 7 MGV CAV CAO SING N N 8 MGV CAO N7 SING N N 9 MGV N7 C8 DOUB Y N 10 MGV N7 C5 SING Y N 11 MGV C8 N9 SING Y N 12 MGV C5 C6 SING N N 13 MGV C5 C4 DOUB Y N 14 MGV C6 O6 DOUB N N 15 MGV C6 N1 SING N N 16 MGV N1 C2 SING N N 17 MGV C2 N2 SING N N 18 MGV C2 N3 DOUB N N 19 MGV N3 C4 SING N N 20 MGV C4 N9 SING Y N 21 MGV N9 "C1'" SING N N 22 MGV "C1'" "O4'" SING N N 23 MGV "C1'" "C2'" SING N N 24 MGV "O4'" "C4'" SING N N 25 MGV "C2'" "O2'" SING N N 26 MGV "C2'" "C3'" SING N N 27 MGV "C3'" "O3'" SING N N 28 MGV "C3'" "C4'" SING N N 29 MGV "C4'" "C5'" SING N N 30 MGV "C5'" "O5'" SING N N 31 MGV "O5'" P SING N N 32 MGV P OP3 SING N N 33 MGV P OP2 SING N N 34 MGV P OP1 DOUB N N 35 MGV CAK HAK SING N N 36 MGV CAI HAI SING N N 37 MGV CAJ HAJ SING N N 38 MGV CAL HAL SING N N 39 MGV CAO HAO1 SING N N 40 MGV CAO HAO2 SING N N 41 MGV C8 H8 SING N N 42 MGV N1 H1 SING N N 43 MGV N2 H2N1 SING N N 44 MGV N2 H2N2 SING N N 45 MGV "C1'" "H1'" SING N N 46 MGV "C2'" "H2'" SING N N 47 MGV "C4'" "H4'" SING N N 48 MGV "O2'" HA SING N N 49 MGV "C3'" "H3'" SING N N 50 MGV "O3'" "HO3'" SING N N 51 MGV "C5'" "H5'1" SING N N 52 MGV "C5'" "H5'2" SING N N 53 MGV OP3 HOP3 SING N N 54 MGV OP2 HOP2 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MGV SMILES ACDLabs 10.04 "Fc1ccc(cc1)C[n+]3c2c(N=C(N)NC2=O)n(c3)C4OC(C(O)C4O)COP(=O)(O)O" MGV SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(c[n+](Cc3ccc(F)cc3)c2C(=O)N1)[C@@H]4O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]4O" MGV SMILES CACTVS 3.341 "NC1=Nc2n(c[n+](Cc3ccc(F)cc3)c2C(=O)N1)[CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O" MGV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C[n+]2cn(c3c2C(=O)NC(=N3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)F" MGV SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C[n+]2cn(c3c2C(=O)NC(=N3)N)C4C(C(C(O4)COP(=O)(O)O)O)O)F" MGV InChI InChI 1.03 "InChI=1S/C17H19FN5O8P/c18-9-3-1-8(2-4-9)5-22-7-23(14-11(22)15(26)21-17(19)20-14)16-13(25)12(24)10(31-16)6-30-32(27,28)29/h1-4,7,10,12-13,16,24-25H,5-6H2,(H4-,19,20,21,26,27,28,29)/p+1/t10-,12-,13-,16-/m1/s1" MGV InChIKey InChI 1.03 VLABRVWLURSKLS-XNIJJKJLSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MGV "SYSTEMATIC NAME" ACDLabs 10.04 ;7-(4-fluorobenzyl)guanosine 5'-(dihydrogen phosphate) ; MGV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-[2-amino-7-[(4-fluorophenyl)methyl]-6-oxo-1H-purin-7-ium-9-yl]-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MGV "Create component" 2007-08-16 RCSB MGV "Modify aromatic_flag" 2011-06-04 RCSB MGV "Modify descriptor" 2011-06-04 RCSB #