data_MHG # _chem_comp.id MHG _chem_comp.name "2-methyl, 7-(3-methyl-pentane), guanosine-5'-monophosphate" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C17 H30 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-25 _chem_comp.pdbx_modified_date 2019-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 463.423 _chem_comp.one_letter_code G _chem_comp.three_letter_code MHG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MHG "C1'" C1 C 0 1 N N R 260.936 322.084 261.832 0.554 0.903 -1.661 "C1'" MHG 1 MHG C2 C2 C 0 1 N N N 256.532 322.259 261.615 -0.506 1.355 2.621 C2 MHG 2 MHG "C2'" C3 C 0 1 N N R 262.392 322.100 261.420 1.154 2.317 -1.495 "C2'" MHG 3 MHG C21 C4 C 0 1 N N N 256.162 320.189 262.825 1.826 1.787 3.265 C21 MHG 4 MHG "C3'" C5 C 0 1 N N S 262.986 321.330 262.583 2.671 2.065 -1.342 "C3'" MHG 5 MHG C4 C6 C 0 1 N N N 258.716 322.877 261.165 -0.956 0.972 0.381 C4 MHG 6 MHG "C4'" C7 C 0 1 N N R 262.217 321.918 263.761 2.808 0.529 -1.433 "C4'" MHG 7 MHG C5 C8 C 0 1 N N N 258.228 323.927 260.282 -2.302 0.816 0.669 C5 MHG 8 MHG "C5'" C9 C 0 1 N N N 262.885 323.083 264.436 3.889 0.033 -0.471 "C5'" MHG 9 MHG C6 C10 C 0 1 N N N 256.777 324.076 260.138 -2.729 0.931 2.000 C6 MHG 10 MHG C8 C11 C 0 1 N N N 260.588 324.036 260.276 -2.033 0.533 -1.610 C8 MHG 11 MHG N1 N1 N 0 1 N N N 256.025 323.219 260.830 -1.816 1.206 2.955 N1 MHG 12 MHG N2 N2 N 0 1 N N N 255.689 321.436 262.257 0.410 1.628 3.605 N2 MHG 13 MHG N3 N3 N 0 1 N N N 257.844 322.080 261.792 -0.096 1.239 1.378 N3 MHG 14 MHG N7 N4 N 0 1 N N N 259.310 324.568 259.831 -3.016 0.544 -0.518 N7 MHG 15 MHG N9 N5 N 0 1 N N N 260.029 322.989 261.121 -0.738 0.811 -0.978 N9 MHG 16 MHG "O2'" O1 O 0 1 N N N 262.589 321.499 260.160 0.893 3.111 -2.654 "O2'" MHG 17 MHG "O3'" O2 O 0 1 N N N 262.625 319.957 262.450 3.393 2.697 -2.401 "O3'" MHG 18 MHG "O4'" O3 O 0 1 N N N 260.948 322.360 263.211 1.514 0.020 -1.042 "O4'" MHG 19 MHG "O5'" O4 O 0 1 N N N 264.298 323.003 264.333 4.081 -1.371 -0.655 "O5'" MHG 20 MHG O6 O5 O 0 1 N N N 256.272 324.957 259.423 -3.909 0.800 2.288 O6 MHG 21 MHG OP1 O6 O 0 1 N N N 264.455 324.704 262.499 6.489 -1.618 0.062 OP1 MHG 22 MHG OP2 O7 O 0 1 N N N 266.574 323.765 263.661 4.713 -2.240 1.745 OP2 MHG 23 MHG P P1 P 0 1 N N N 265.144 324.206 263.736 5.147 -2.228 0.195 P MHG 24 MHG C71 C12 C 0 1 N N N 259.540 325.685 258.910 -4.458 0.316 -0.637 C71 MHG 25 MHG C72 C13 C 0 1 N N N 258.862 326.998 259.268 -4.754 -1.177 -0.478 C72 MHG 26 MHG C73 C14 C 0 1 N N S 259.497 328.141 258.487 -6.260 -1.415 -0.603 C73 MHG 27 MHG C74 C15 C 0 1 N N N 260.670 328.690 259.289 -6.569 -2.886 -0.321 C74 MHG 28 MHG C75 C16 C 0 1 N N N 258.479 329.227 258.168 -6.717 -1.061 -2.020 C75 MHG 29 MHG C76 C17 C 0 1 N N N 261.483 329.678 258.486 -8.084 -3.099 -0.323 C76 MHG 30 MHG H1 H1 H 0 1 N N N 260.569 321.058 261.685 0.442 0.660 -2.718 H1 MHG 31 MHG H2 H2 H 0 1 N N N 262.768 323.134 261.430 0.754 2.799 -0.603 H2 MHG 32 MHG H3 H3 H 0 1 N N N 255.324 319.663 263.305 2.196 0.868 2.809 H3 MHG 33 MHG H4 H4 H 0 1 N N N 256.582 319.559 262.027 1.941 2.613 2.562 H4 MHG 34 MHG H5 H5 H 0 1 N N N 256.940 320.399 263.574 2.396 1.998 4.170 H5 MHG 35 MHG H6 H6 H 0 1 N N N 264.070 321.493 262.677 3.021 2.423 -0.374 H6 MHG 36 MHG H7 H7 H 0 1 N N N 262.044 321.124 264.503 3.043 0.230 -2.455 H7 MHG 37 MHG H8 H8 H 0 1 N N N 262.544 324.015 263.961 4.823 0.557 -0.673 H8 MHG 38 MHG H9 H9 H 0 1 N N N 262.604 323.089 265.499 3.579 0.226 0.555 H9 MHG 39 MHG H10 H10 H 0 1 N N N 261.194 323.637 259.449 -2.015 -0.445 -2.090 H10 MHG 40 MHG H11 H11 H 0 1 N N N 255.031 323.297 260.759 -2.094 1.296 3.880 H11 MHG 41 MHG H12 H12 H 0 1 N N N 254.725 321.685 262.345 0.120 1.716 4.527 H12 MHG 42 MHG H13 H13 H 0 1 N N N 263.512 321.528 259.936 1.248 4.009 -2.604 H13 MHG 43 MHG H14 H14 H 0 1 N N N 262.991 319.461 263.173 3.292 3.658 -2.427 H14 MHG 44 MHG H16 H16 H 0 1 N N N 266.890 323.864 262.771 3.842 -2.627 1.907 H16 MHG 45 MHG H17 H17 H 0 1 N N N 259.180 325.381 257.916 -4.980 0.874 0.140 H17 MHG 46 MHG H18 H18 H 0 1 N N N 260.624 325.867 258.867 -4.799 0.651 -1.617 H18 MHG 47 MHG H19 H19 H 0 1 N N N 258.977 327.185 260.346 -4.232 -1.735 -1.255 H19 MHG 48 MHG H20 H20 H 0 1 N N N 257.793 326.936 259.018 -4.413 -1.512 0.501 H20 MHG 49 MHG H21 H21 H 0 1 N N N 259.884 327.739 257.539 -6.788 -0.788 0.116 H21 MHG 50 MHG H22 H22 H 0 1 N N N 261.319 327.854 259.588 -6.114 -3.508 -1.092 H22 MHG 51 MHG H23 H23 H 0 1 N N N 260.283 329.194 260.187 -6.165 -3.162 0.653 H23 MHG 52 MHG H24 H24 H 0 1 N N N 258.969 330.035 257.605 -6.497 -0.012 -2.221 H24 MHG 53 MHG H25 H25 H 0 1 N N N 257.665 328.800 257.564 -6.189 -1.687 -2.739 H25 MHG 54 MHG H26 H26 H 0 1 N N N 258.067 329.630 259.105 -7.790 -1.230 -2.109 H26 MHG 55 MHG H27 H27 H 0 1 N N N 262.318 330.050 259.098 -8.539 -2.478 0.449 H27 MHG 56 MHG H28 H28 H 0 1 N N N 261.880 329.182 257.588 -8.488 -2.823 -1.297 H28 MHG 57 MHG H29 H29 H 0 1 N N N 260.843 330.521 258.187 -8.304 -4.148 -0.122 H29 MHG 58 MHG OP3 OP3 O 0 1 N N N 265.034 325.348 264.851 5.187 -3.738 -0.363 OP3 MHG 59 MHG H15 H15 H 0 1 N N N 264.561 326.092 264.497 5.810 -4.313 0.104 H15 MHG 60 MHG H30 H30 H 0 1 N N N 261.180 324.770 260.843 -2.270 1.306 -2.340 H30 MHG 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MHG C75 C73 SING N N 1 MHG C76 C74 SING N N 2 MHG C73 C72 SING N N 3 MHG C73 C74 SING N N 4 MHG C71 C72 SING N N 5 MHG C71 N7 SING N N 6 MHG O6 C6 DOUB N N 7 MHG N7 C8 SING N N 8 MHG N7 C5 SING N N 9 MHG C6 C5 SING N N 10 MHG C6 N1 SING N N 11 MHG "O2'" "C2'" SING N N 12 MHG C8 N9 SING N N 13 MHG C5 C4 DOUB N N 14 MHG N1 C2 SING N N 15 MHG N9 C4 SING N N 16 MHG N9 "C1'" SING N N 17 MHG C4 N3 SING N N 18 MHG "C2'" "C1'" SING N N 19 MHG "C2'" "C3'" SING N N 20 MHG C2 N3 DOUB N N 21 MHG C2 N2 SING N N 22 MHG "C1'" "O4'" SING N N 23 MHG N2 C21 SING N N 24 MHG "O3'" "C3'" SING N N 25 MHG OP1 P DOUB N N 26 MHG "C3'" "C4'" SING N N 27 MHG "O4'" "C4'" SING N N 28 MHG OP2 P SING N N 29 MHG P "O5'" SING N N 30 MHG "C4'" "C5'" SING N N 31 MHG "O5'" "C5'" SING N N 32 MHG "C1'" H1 SING N N 33 MHG "C2'" H2 SING N N 34 MHG C21 H3 SING N N 35 MHG C21 H4 SING N N 36 MHG C21 H5 SING N N 37 MHG "C3'" H6 SING N N 38 MHG "C4'" H7 SING N N 39 MHG "C5'" H8 SING N N 40 MHG "C5'" H9 SING N N 41 MHG C8 H10 SING N N 42 MHG N1 H11 SING N N 43 MHG N2 H12 SING N N 44 MHG "O2'" H13 SING N N 45 MHG "O3'" H14 SING N N 46 MHG OP2 H16 SING N N 47 MHG C71 H17 SING N N 48 MHG C71 H18 SING N N 49 MHG C72 H19 SING N N 50 MHG C72 H20 SING N N 51 MHG C73 H21 SING N N 52 MHG C74 H22 SING N N 53 MHG C74 H23 SING N N 54 MHG C75 H24 SING N N 55 MHG C75 H25 SING N N 56 MHG C75 H26 SING N N 57 MHG C76 H27 SING N N 58 MHG C76 H28 SING N N 59 MHG C76 H29 SING N N 60 MHG P OP3 SING N N 61 MHG OP3 H15 SING N N 62 MHG C8 H30 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MHG InChI InChI 1.03 "InChI=1S/C17H30N5O8P/c1-4-9(2)5-6-21-8-22(14-11(21)15(25)20-17(18-3)19-14)16-13(24)12(23)10(30-16)7-29-31(26,27)28/h9-10,12-13,16,23-24H,4-8H2,1-3H3,(H2,26,27,28)(H2,18,19,20,25)/t9-,10+,12+,13+,16+/m0/s1" MHG InChIKey InChI 1.03 WNUMQHCELGRVGJ-UOYPZJKHSA-N MHG SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)CCN1CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C3=C1C(=O)NC(=N3)NC" MHG SMILES CACTVS 3.385 "CC[CH](C)CCN1CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C3=C1C(=O)NC(=N3)NC" MHG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC[C@H](C)CCN1CN(C2=C1C(=O)NC(=N2)NC)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" MHG SMILES "OpenEye OEToolkits" 2.0.6 "CCC(C)CCN1CN(C2=C1C(=O)NC(=N2)NC)C3C(C(C(O3)COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id MHG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[2-(methylamino)-7-[(3~{S})-3-methylpentyl]-6-oxidanylidene-1,8-dihydropurin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MHG "Create component" 2017-09-25 EBI MHG "Initial release" 2018-01-24 RCSB MHG "Modify one letter code" 2019-05-03 EBI ##