data_MID # _chem_comp.id MID _chem_comp.name "1-[N-(naphthalen-2-ylsulfonyl)glycyl-4-carbamimidoyl-D-phenylalanyl]piperidine" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms NAPAP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.631 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MID _chem_comp.pdbx_model_coordinates_details "not provided" _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PPC _chem_comp.pdbx_subcomponent_list "NAS GLY APH PIP" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MID S S1 S 0 1 N N N -5.827 4.782 25.917 -3.110 -1.397 -1.687 S NAS 1 MID O1S O1 O 0 1 N N N -6.385 3.362 25.952 -2.676 -2.679 -1.252 O1S NAS 2 MID O2S O2 O 0 1 N N N -6.883 5.767 26.435 -3.667 -1.160 -2.972 O2S NAS 3 MID C1 C1 C 0 1 Y N N -3.761 3.904 27.580 -5.236 0.071 -0.886 C1 NAS 4 MID C2 C2 C 0 1 Y N N -4.366 4.956 26.943 -4.310 -0.855 -0.516 C2 NAS 5 MID C3 C3 C 0 1 Y N N -3.874 6.218 27.129 -4.296 -1.380 0.774 C3 NAS 6 MID C4 C4 C 0 1 Y N N -2.823 6.431 27.991 -5.209 -0.983 1.702 C4 NAS 7 MID C5 C5 C 0 1 Y N N -1.166 5.608 29.471 -7.139 0.407 2.289 C5 NAS 8 MID C6 C6 C 0 1 Y N N -0.538 4.541 30.087 -8.065 1.334 1.919 C6 NAS 9 MID C7 C7 C 0 1 Y N N -1.003 3.254 29.890 -8.078 1.860 0.629 C7 NAS 10 MID C8 C8 C 0 1 Y N N -2.096 3.018 29.071 -7.166 1.461 -0.300 C8 NAS 11 MID C9 C9 C 0 1 Y N N -2.686 4.086 28.424 -6.194 0.507 0.045 C9 NAS 12 MID C10 C10 C 0 1 Y N N -2.232 5.365 28.630 -6.181 -0.028 1.357 C10 NAS 13 MID N N1 N 0 1 N N N -5.552 5.020 24.298 -1.802 -0.390 -1.552 N GLY 14 MID CA C11 C 0 1 N N N -4.609 4.087 23.730 -1.019 -0.369 -0.314 CA GLY 15 MID C C12 C 0 1 N N N -3.281 4.714 23.323 0.295 0.326 -0.563 C GLY 16 MID O O4 O 0 1 N N N -2.960 5.863 23.650 0.552 0.761 -1.666 O GLY 17 MID N1 N2 N 0 1 N N N -2.595 3.903 22.499 1.185 0.464 0.440 N APH 18 MID CA1 C13 C 0 1 N N R -1.270 4.160 21.952 2.462 1.140 0.198 CA APH 19 MID CB C14 C 0 1 N N N -0.428 2.907 22.194 2.279 2.628 0.348 C APH 20 MID O1 O6 O 0 1 N N N -0.202 2.116 21.272 1.336 3.063 0.975 O APH 21 MID CB1 C15 C 0 1 N N N -1.333 4.480 20.450 3.499 0.648 1.210 CB APH 22 MID CG C16 C 0 1 Y N N -2.002 5.806 20.150 3.780 -0.813 0.972 CG APH 23 MID CD1 C17 C 0 1 Y N N -3.381 5.901 20.092 4.789 -1.188 0.104 CD1 APH 24 MID CD2 C18 C 0 1 Y N N -1.236 6.941 20.023 3.031 -1.774 1.628 CD2 APH 25 MID CE1 C19 C 0 1 Y N N -3.993 7.120 19.871 5.051 -2.524 -0.118 CE1 APH 26 MID CE2 C20 C 0 1 Y N N -1.853 8.155 19.797 3.284 -3.114 1.414 CE2 APH 27 MID CZ C21 C 0 1 Y N N -3.237 8.268 19.739 4.297 -3.498 0.536 CZ APH 28 MID CF C22 C 0 1 N N N -3.833 9.527 19.579 4.573 -4.934 0.302 CF APH 29 MID NG1 N3 N 0 1 N N N -5.127 9.723 19.894 5.522 -5.290 -0.516 NG1 APH 30 MID NG2 N4 N 0 1 N N N -3.067 10.544 19.167 3.826 -5.893 0.949 NG2 APH 31 MID N11 N5 N 0 1 N N N 0.074 2.687 23.420 3.164 3.476 -0.213 N1 PIP 32 MID C21 C23 C 0 1 N N N 0.019 3.672 24.488 3.062 4.924 0.015 C2 PIP 33 MID C31 C24 C 0 1 N N N -0.704 3.033 25.650 4.409 5.437 0.533 C3 PIP 34 MID C41 C25 C 0 1 N N N 0.155 1.880 26.146 5.515 5.031 -0.443 C4 PIP 35 MID C51 C26 C 0 1 N N N 0.301 0.904 24.982 5.583 3.505 -0.534 C5 PIP 36 MID C61 C27 C 0 1 N N N 0.905 1.536 23.745 4.253 2.969 -1.060 C6 PIP 37 MID H1 H2 H 0 1 N N N -4.137 2.905 27.416 -5.232 0.473 -1.889 H1 NAS 38 MID H3 H3 H 0 1 N N N -4.312 7.050 26.598 -3.550 -2.114 1.042 H3 NAS 39 MID H4 H4 H 0 1 N N N -2.462 7.434 28.166 -5.187 -1.400 2.698 H4 NAS 40 MID H5 H5 H 0 1 N N N -0.826 6.618 29.646 -7.140 0.009 3.292 H5 NAS 41 MID H6 H6 H 0 1 N N N 0.317 4.713 30.723 -8.800 1.666 2.637 H6 NAS 42 MID H7 H7 H 0 1 N N N -0.511 2.426 30.378 -8.823 2.594 0.361 H7 NAS 43 MID H8 H8 H 0 1 N N N -2.479 2.017 28.941 -7.189 1.877 -1.296 H8 NAS 44 MID H H9 H 0 1 N N N -5.188 5.943 24.177 -1.555 0.186 -2.292 H GLY 45 MID HA2 H11 H 0 1 N N N -4.402 3.313 24.484 -1.572 0.166 0.457 HA2 GLY 46 MID HA3 H12 H 0 1 N N N -5.068 3.687 22.814 -0.832 -1.391 0.015 HA3 GLY 47 MID H2 H14 H 0 1 N N N -3.035 3.044 22.238 0.980 0.116 1.322 H APH 48 MID HA H16 H 0 1 N N N -0.825 5.037 22.445 2.806 0.916 -0.812 HA APH 49 MID HB2 H17 H 0 1 N N N -0.304 4.518 20.062 4.420 1.219 1.093 HB2 APH 50 MID HB3 H18 H 0 1 N N N -1.933 3.693 19.971 3.113 0.784 2.221 HB3 APH 51 MID HD1 H19 H 0 1 N N N -3.984 5.015 20.221 5.373 -0.433 -0.402 HD1 APH 52 MID HD2 H20 H 0 1 N N N -0.160 6.883 20.099 2.247 -1.475 2.308 HD2 APH 53 MID HE1 H21 H 0 1 N N N -5.069 7.175 19.801 5.840 -2.816 -0.797 HE1 APH 54 MID HE2 H22 H 0 1 N N N -1.246 9.038 19.662 2.699 -3.863 1.927 HE2 APH 55 MID HG1 H23 H 0 1 N N N -5.375 10.675 19.716 5.703 -6.230 -0.669 HG1 APH 56 MID HG21 H24 H 0 0 N N N -2.135 10.219 19.006 3.118 -5.628 1.558 HG21 APH 57 MID HG22 H25 H 0 0 N N N -3.379 11.486 19.040 4.006 -6.834 0.796 HG22 APH 58 MID H21 H28 H 0 1 N N N 1.036 3.965 24.788 2.816 5.424 -0.921 H21 PIP 59 MID H22 H29 H 0 1 N N N -0.507 4.579 24.154 2.286 5.123 0.754 H22 PIP 60 MID H31 H30 H 0 1 N N N -0.851 3.768 26.455 4.377 6.524 0.615 H31 PIP 61 MID H32 H31 H 0 1 N N N -1.694 2.670 25.336 4.611 5.004 1.513 H32 PIP 62 MID H41 H32 H 0 1 N N N 1.142 2.247 26.463 5.300 5.444 -1.429 H41 PIP 63 MID H42 H33 H 0 1 N N N -0.309 1.389 27.014 6.471 5.417 -0.089 H42 PIP 64 MID H51 H34 H 0 1 N N N 0.956 0.081 25.303 6.386 3.216 -1.212 H51 PIP 65 MID H52 H35 H 0 1 N N N -0.708 0.558 24.715 5.774 3.090 0.455 H52 PIP 66 MID H61 H36 H 0 1 N N N 0.912 0.819 22.911 4.262 1.879 -1.030 H61 PIP 67 MID H62 H37 H 0 1 N N N 1.948 1.838 23.923 4.105 3.307 -2.086 H62 PIP 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MID S O1S DOUB N N 1 MID S O2S DOUB N N 2 MID S C2 SING N N 3 MID C1 C2 DOUB Y N 4 MID C1 C9 SING Y N 5 MID C1 H1 SING N N 6 MID C2 C3 SING Y N 7 MID C3 C4 DOUB Y N 8 MID C3 H3 SING N N 9 MID C4 C10 SING Y N 10 MID C4 H4 SING N N 11 MID C5 C6 DOUB Y N 12 MID C5 C10 SING Y N 13 MID C5 H5 SING N N 14 MID C6 C7 SING Y N 15 MID C6 H6 SING N N 16 MID C7 C8 DOUB Y N 17 MID C7 H7 SING N N 18 MID C8 C9 SING Y N 19 MID C8 H8 SING N N 20 MID C9 C10 DOUB Y N 21 MID N CA SING N N 22 MID N H SING N N 23 MID CA C SING N N 24 MID CA HA2 SING N N 25 MID CA HA3 SING N N 26 MID C O DOUB N N 27 MID N1 CA1 SING N N 28 MID N1 H2 SING N N 29 MID CA1 CB SING N N 30 MID CA1 CB1 SING N N 31 MID CA1 HA SING N N 32 MID CB O1 DOUB N N 33 MID CB1 CG SING N N 34 MID CB1 HB2 SING N N 35 MID CB1 HB3 SING N N 36 MID CG CD1 DOUB Y N 37 MID CG CD2 SING Y N 38 MID CD1 CE1 SING Y N 39 MID CD1 HD1 SING N N 40 MID CD2 CE2 DOUB Y N 41 MID CD2 HD2 SING N N 42 MID CE1 CZ DOUB Y N 43 MID CE1 HE1 SING N N 44 MID CE2 CZ SING Y N 45 MID CE2 HE2 SING N N 46 MID CZ CF SING N N 47 MID CF NG1 DOUB N N 48 MID CF NG2 SING N N 49 MID NG1 HG1 SING N N 50 MID NG2 HG21 SING N N 51 MID NG2 HG22 SING N N 52 MID N11 C21 SING N N 53 MID N11 C61 SING N N 54 MID C21 C31 SING N N 55 MID C21 H21 SING N N 56 MID C21 H22 SING N N 57 MID C31 C41 SING N N 58 MID C31 H31 SING N N 59 MID C31 H32 SING N N 60 MID C41 C51 SING N N 61 MID C41 H41 SING N N 62 MID C41 H42 SING N N 63 MID C51 C61 SING N N 64 MID C51 H51 SING N N 65 MID C51 H52 SING N N 66 MID C61 H61 SING N N 67 MID C61 H62 SING N N 68 MID S N SING N N 69 MID C N1 SING N N 70 MID CB N11 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MID SMILES ACDLabs 10.04 "O=C(N1CCCCC1)C(NC(=O)CNS(=O)(=O)c3cc2ccccc2cc3)Cc4ccc(C(=[N@H])N)cc4" MID SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(C[C@@H](NC(=O)CN[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N4CCCCC4)cc1" MID SMILES CACTVS 3.341 "NC(=N)c1ccc(C[CH](NC(=O)CN[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N4CCCCC4)cc1" MID SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(/c1ccc(cc1)C[C@H](C(=O)N2CCCCC2)NC(=O)CNS(=O)(=O)c3ccc4ccccc4c3)\N" MID SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1ccc(cc1)CC(C(=O)N2CCCCC2)NC(=O)CNS(=O)(=O)c3ccc4ccccc4c3)N" MID InChI InChI 1.03 "InChI=1S/C27H31N5O4S/c28-26(29)21-10-8-19(9-11-21)16-24(27(34)32-14-4-1-5-15-32)31-25(33)18-30-37(35,36)23-13-12-20-6-2-3-7-22(20)17-23/h2-3,6-13,17,24,30H,1,4-5,14-16,18H2,(H3,28,29)(H,31,33)/t24-/m1/s1" MID InChIKey InChI 1.03 XXTWZTPVNIYSJZ-XMMPIXPASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MID "SYSTEMATIC NAME" ACDLabs 10.04 "1-[N-(naphthalen-2-ylsulfonyl)glycyl-4-carbamimidoyl-D-phenylalanyl]piperidine" MID "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2R)-3-(4-carbamimidoylphenyl)-1-oxo-1-piperidin-1-yl-propan-2-yl]-2-(naphthalen-2-ylsulfonylamino)ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MID "Create component" 1999-07-08 RCSB MID "Modify aromatic_flag" 2011-06-04 RCSB MID "Modify descriptor" 2011-06-04 RCSB MID "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MID _pdbx_chem_comp_synonyms.name NAPAP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##