data_MIJ # _chem_comp.id MIJ _chem_comp.name "(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(2-phenylethanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-27 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 537.607 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MIJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AIZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MIJ N1 N1 N 0 1 N N N N N N -15.748 -21.598 -0.513 4.206 1.868 -0.395 N1 MIJ 1 MIJ N3 N2 N 0 1 N N N N N N -14.022 -27.368 1.385 -2.515 0.041 0.509 N3 MIJ 2 MIJ C4 C1 C 0 1 Y N N N N N -14.343 -17.527 0.148 6.414 -1.849 -1.707 C4 MIJ 3 MIJ C5 C2 C 0 1 Y N N N N N -15.405 -17.898 -0.671 6.202 -1.279 -0.465 C5 MIJ 4 MIJ C6 C3 C 0 1 Y N N N N N -15.803 -17.026 -1.675 6.136 -2.079 0.660 C6 MIJ 5 MIJ C7 C4 C 0 1 N N N N N N -16.103 -19.221 -0.478 6.044 0.214 -0.339 C7 MIJ 6 MIJ C8 C5 C 0 1 N N N N N N -15.238 -20.404 -0.877 4.588 0.578 -0.475 C8 MIJ 7 MIJ C10 C6 C 0 1 N N N N N N -15.730 -23.953 -0.341 1.845 1.671 0.195 C10 MIJ 8 MIJ C13 C7 C 0 1 N N N N N N -15.678 -22.987 -2.573 2.532 3.091 -1.612 C13 MIJ 9 MIJ C15 C8 C 0 1 N N N N N N -14.280 -26.780 0.215 -1.457 0.660 -0.050 C15 MIJ 10 MIJ C17 C9 C 0 1 N N R N N N -12.965 -29.492 1.806 -4.500 0.242 -0.905 C17 MIJ 11 MIJ C20 C10 C 0 1 N N N N N N -17.915 -27.105 -0.975 -0.295 3.266 2.501 C20 MIJ 12 MIJ C21 C11 C 0 1 N N N N N N -18.961 -27.158 0.086 -0.887 4.349 3.405 C21 MIJ 13 MIJ C22 C12 C 0 1 N N N N N N -19.015 -28.115 -1.062 0.019 4.739 2.234 C22 MIJ 14 MIJ C24 C13 C 0 1 N N S N N N -11.728 -25.857 2.608 -3.118 -2.831 0.951 C24 MIJ 15 MIJ C26 C14 C 0 1 N N N N N N -9.788 -24.469 2.067 -3.588 -3.435 3.224 C26 MIJ 16 MIJ C28 C15 C 0 1 N N N N N N -10.600 -32.090 0.433 -6.194 -0.877 -4.149 C28 MIJ 17 MIJ C1 C16 C 0 1 Y N N N N N -15.152 -15.813 -1.858 6.282 -3.449 0.544 C1 MIJ 18 MIJ C2 C17 C 0 1 Y N N N N N -14.100 -15.456 -1.037 6.493 -4.019 -0.697 C2 MIJ 19 MIJ C3 C18 C 0 1 Y N N N N N -13.690 -16.314 -0.040 6.552 -3.220 -1.824 C3 MIJ 20 MIJ O1 O1 O 0 1 N N N N N N -14.169 -20.286 -1.469 3.760 -0.289 -0.656 O1 MIJ 21 MIJ C9 C19 C 0 1 N N N N N N -15.697 -22.843 -1.185 2.866 2.217 -0.613 C9 MIJ 22 MIJ N2 N3 N 0 1 N N N N N N -15.717 -25.194 -0.951 0.560 2.009 -0.026 N2 MIJ 23 MIJ C11 C20 C 0 1 N N N N N N -15.635 -25.336 -2.311 0.230 2.877 -1.019 C11 MIJ 24 MIJ C12 C21 C 0 1 N N N N N N -15.632 -24.263 -3.123 1.184 3.423 -1.809 C12 MIJ 25 MIJ O2 O2 O 0 1 N N N N N N -15.761 -23.910 0.879 2.126 0.890 1.090 O2 MIJ 26 MIJ C14 C22 C 0 1 N N S N N N -15.710 -26.378 -0.081 -0.494 1.435 0.813 C14 MIJ 27 MIJ C16 C23 C 0 1 N N S N N N -12.734 -27.970 1.700 -3.451 -0.712 -0.330 C16 MIJ 28 MIJ C18 C24 C 0 1 N N N N N N -11.695 -30.310 1.675 -5.369 -0.501 -1.887 C18 MIJ 29 MIJ N4 N4 N 0 1 N N N N N N -11.652 -31.112 0.625 -5.274 -0.237 -3.205 N4 MIJ 30 MIJ C19 C25 C 0 1 N N N N N N -16.511 -27.534 -0.667 -1.244 2.559 1.531 C19 MIJ 31 MIJ O3 O3 O 0 1 N N N N N N -13.410 -26.572 -0.623 -1.280 0.595 -1.248 O3 MIJ 32 MIJ C23 C26 C 0 1 N N N N N N -12.113 -27.305 2.926 -4.144 -1.783 0.514 C23 MIJ 33 MIJ O4 O4 O 0 1 N N N N N N -13.855 -29.873 0.757 -3.846 1.323 -1.572 O4 MIJ 34 MIJ O5 O5 O 0 1 N N N N N N -10.793 -30.208 2.514 -6.154 -1.337 -1.491 O5 MIJ 35 MIJ C25 C27 C 0 1 N N N N N N -10.626 -25.669 1.568 -3.800 -3.944 1.781 C25 MIJ 36 MIJ N5 N5 N 0 1 N N N N N N -10.186 -24.323 3.461 -2.395 -2.581 3.167 N5 MIJ 37 MIJ C27 C28 C 0 1 N N N N N N -11.229 -25.072 3.810 -2.112 -2.223 1.902 C27 MIJ 38 MIJ O6 O6 O 0 1 N N N N N N -11.730 -25.115 4.932 -1.184 -1.515 1.573 O6 MIJ 39 MIJ H1 H1 H 0 1 N N N N N N -16.234 -21.605 0.361 4.857 2.555 -0.182 H1 MIJ 40 MIJ H2 H2 H 0 1 N N N N N N -14.745 -27.396 2.076 -2.657 0.093 1.467 H2 MIJ 41 MIJ H3 H3 H 0 1 N N N N N N -14.022 -18.189 0.939 6.466 -1.224 -2.586 H3 MIJ 42 MIJ H4 H4 H 0 1 N N N N N N -16.627 -17.293 -2.320 5.971 -1.633 1.630 H4 MIJ 43 MIJ H5 H5 H 0 1 N N N N N N -17.016 -19.230 -1.091 6.410 0.537 0.635 H5 MIJ 44 MIJ H6 H6 H 0 1 N N N N N N -16.373 -19.325 0.583 6.617 0.708 -1.124 H6 MIJ 45 MIJ H7 H7 H 0 1 N N N N N N -15.699 -22.117 -3.213 3.298 3.520 -2.241 H7 MIJ 46 MIJ H8 H8 H 0 1 N N N N N N -13.423 -29.706 2.783 -5.118 0.633 -0.097 H8 MIJ 47 MIJ H9 H9 H 0 1 N N N N N N -18.001 -26.261 -1.675 0.503 2.648 2.913 H9 MIJ 48 MIJ H10 H10 H 0 1 N N N N N N -19.705 -26.352 0.165 -1.952 4.558 3.308 H10 MIJ 49 MIJ H11 H11 H 0 1 N N N N N N -18.705 -27.521 1.092 -0.478 4.444 4.411 H11 MIJ 50 MIJ H12 H12 H 0 1 N N N N N N -19.798 -28.012 -1.828 1.023 5.091 2.471 H12 MIJ 51 MIJ H13 H13 H 0 1 N N N N N N -18.798 -29.181 -0.901 -0.451 5.205 1.368 H13 MIJ 52 MIJ H14 H14 H 0 1 N N N N N N -12.629 -25.351 2.231 -2.614 -3.255 0.082 H14 MIJ 53 MIJ H15 H15 H 0 1 N N N N N N -8.712 -24.682 1.987 -4.451 -2.855 3.551 H15 MIJ 54 MIJ H16 H16 H 0 1 N N N N N N -10.025 -23.560 1.494 -3.419 -4.273 3.900 H16 MIJ 55 MIJ H17 H17 H 0 1 N N N N N N -10.774 -32.637 -0.505 -6.082 -1.960 -4.088 H17 MIJ 56 MIJ H18 H18 H 0 1 N N N N N N -9.628 -31.578 0.383 -7.219 -0.604 -3.899 H18 MIJ 57 MIJ H19 H19 H 0 1 N N N N N N -10.599 -32.797 1.275 -5.966 -0.544 -5.161 H19 MIJ 58 MIJ H20 H20 H 0 1 N N N N N N -15.470 -15.146 -2.646 6.231 -4.073 1.424 H20 MIJ 59 MIJ H21 H21 H 0 1 N N N N N N -13.601 -14.508 -1.176 6.607 -5.089 -0.788 H21 MIJ 60 MIJ H22 H22 H 0 1 N N N N N N -12.860 -16.044 0.596 6.717 -3.665 -2.793 H22 MIJ 61 MIJ H23 H23 H 0 1 N N N N N N -15.572 -26.326 -2.739 -0.806 3.135 -1.180 H23 MIJ 62 MIJ H24 H24 H 0 1 N N N N N N -15.594 -24.392 -4.195 0.907 4.111 -2.593 H24 MIJ 63 MIJ H25 H25 H 0 1 N N N N N N -16.181 -26.102 0.874 -0.049 0.766 1.549 H25 MIJ 64 MIJ H26 H26 H 0 1 N N N N N N -12.055 -27.800 0.852 -2.906 -1.188 -1.145 H26 MIJ 65 MIJ H27 H27 H 0 1 N N N N N N -12.374 -31.041 -0.064 -4.596 0.376 -3.529 H27 MIJ 66 MIJ H28 H28 H 0 1 N N N N N N -16.537 -28.360 0.059 -2.083 2.139 2.085 H28 MIJ 67 MIJ H29 H29 H 0 1 N N N N N N -16.027 -27.876 -1.594 -1.614 3.275 0.798 H29 MIJ 68 MIJ H30 H30 H 0 1 N N N N N N -12.840 -27.314 3.751 -4.924 -2.263 -0.077 H30 MIJ 69 MIJ H31 H31 H 0 1 N N N N N N -11.213 -27.863 3.224 -4.588 -1.321 1.395 H31 MIJ 70 MIJ H32 H32 H 0 1 N N N N N N -14.658 -29.369 0.824 -3.269 1.847 -0.999 H32 MIJ 71 MIJ H33 H33 H 0 1 N N N N N N -11.061 -25.450 0.582 -4.862 -4.012 1.544 H33 MIJ 72 MIJ H34 H34 H 0 1 N N N N N N -10.002 -26.572 1.501 -3.306 -4.903 1.628 H34 MIJ 73 MIJ H35 H35 H 0 1 N N N N N N -9.716 -23.713 4.100 -1.878 -2.310 3.941 H35 MIJ 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MIJ C12 C13 SING N N 1 MIJ C12 C11 DOUB N N 2 MIJ C13 C9 DOUB N N 3 MIJ C11 N2 SING N N 4 MIJ C1 C6 DOUB Y N 5 MIJ C1 C2 SING Y N 6 MIJ C6 C5 SING Y N 7 MIJ O1 C8 DOUB N N 8 MIJ C9 N1 SING N N 9 MIJ C9 C10 SING N N 10 MIJ C22 C20 SING N N 11 MIJ C22 C21 SING N N 12 MIJ C2 C3 DOUB Y N 13 MIJ C20 C19 SING N N 14 MIJ C20 C21 SING N N 15 MIJ N2 C10 SING N N 16 MIJ N2 C14 SING N N 17 MIJ C8 N1 SING N N 18 MIJ C8 C7 SING N N 19 MIJ C5 C7 SING N N 20 MIJ C5 C4 DOUB Y N 21 MIJ C19 C14 SING N N 22 MIJ O3 C15 DOUB N N 23 MIJ C10 O2 DOUB N N 24 MIJ C14 C15 SING N N 25 MIJ C3 C4 SING Y N 26 MIJ C15 N3 SING N N 27 MIJ C28 N4 SING N N 28 MIJ N4 C18 SING N N 29 MIJ O4 C17 SING N N 30 MIJ N3 C16 SING N N 31 MIJ C25 C26 SING N N 32 MIJ C25 C24 SING N N 33 MIJ C18 C17 SING N N 34 MIJ C18 O5 DOUB N N 35 MIJ C16 C17 SING N N 36 MIJ C16 C23 SING N N 37 MIJ C26 N5 SING N N 38 MIJ C24 C23 SING N N 39 MIJ C24 C27 SING N N 40 MIJ N5 C27 SING N N 41 MIJ C27 O6 DOUB N N 42 MIJ N1 H1 SING N N 43 MIJ N3 H2 SING N N 44 MIJ C4 H3 SING N N 45 MIJ C6 H4 SING N N 46 MIJ C7 H5 SING N N 47 MIJ C7 H6 SING N N 48 MIJ C13 H7 SING N N 49 MIJ C17 H8 SING N N 50 MIJ C20 H9 SING N N 51 MIJ C21 H10 SING N N 52 MIJ C21 H11 SING N N 53 MIJ C22 H12 SING N N 54 MIJ C22 H13 SING N N 55 MIJ C24 H14 SING N N 56 MIJ C26 H15 SING N N 57 MIJ C26 H16 SING N N 58 MIJ C28 H17 SING N N 59 MIJ C28 H18 SING N N 60 MIJ C28 H19 SING N N 61 MIJ C1 H20 SING N N 62 MIJ C2 H21 SING N N 63 MIJ C3 H22 SING N N 64 MIJ C11 H23 SING N N 65 MIJ C12 H24 SING N N 66 MIJ C14 H25 SING N N 67 MIJ C16 H26 SING N N 68 MIJ N4 H27 SING N N 69 MIJ C19 H28 SING N N 70 MIJ C19 H29 SING N N 71 MIJ C23 H30 SING N N 72 MIJ C23 H31 SING N N 73 MIJ O4 H32 SING N N 74 MIJ C25 H33 SING N N 75 MIJ C25 H34 SING N N 76 MIJ N5 H35 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MIJ InChI InChI 1.06 "InChI=1S/C28H35N5O6/c1-29-27(38)24(35)21(16-19-11-12-30-25(19)36)32-26(37)22(14-18-9-10-18)33-13-5-8-20(28(33)39)31-23(34)15-17-6-3-2-4-7-17/h2-8,13,18-19,21-22,24,35H,9-12,14-16H2,1H3,(H,29,38)(H,30,36)(H,31,34)(H,32,37)/t19-,21-,22-,24+/m0/s1" MIJ InChIKey InChI 1.06 QZDBNMWKNRLEHS-NRTAZHGZSA-N MIJ SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@H](O)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(NC(=O)Cc4ccccc4)C3=O" MIJ SMILES CACTVS 3.385 "CNC(=O)[CH](O)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)N3C=CC=C(NC(=O)Cc4ccccc4)C3=O" MIJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)N3C=CC=C(C3=O)NC(=O)Cc4ccccc4)O" MIJ SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C(C(CC1CCNC1=O)NC(=O)C(CC2CC2)N3C=CC=C(C3=O)NC(=O)Cc4ccccc4)O" # _pdbx_chem_comp_identifier.comp_id MIJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[2-oxidanylidene-3-(2-phenylethanoylamino)pyridin-1-yl]propanoyl]amino]-~{N}-methyl-2-oxidanyl-4-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MIJ "Create component" 2022-07-27 PDBE MIJ "Initial release" 2023-08-16 RCSB MIJ "Modify descriptor" 2023-09-23 RCSB MIJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id MIJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #