data_MIY # _chem_comp.id MIY _chem_comp.name ;(4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms MINOCYCLINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-06-09 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MIY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "not provided" _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MIY O8 O8 O 0 1 N N N 170.122 125.095 24.393 ? ? ? O8 MIY 1 MIY C21 C21 C 0 1 N N N 169.361 125.575 25.231 ? ? ? C21 MIY 2 MIY N2 N2 N 0 1 N N N 168.316 126.356 24.803 ? ? ? N2 MIY 3 MIY C2 C2 C 0 1 N N N 169.644 125.355 26.712 ? ? ? C2 MIY 4 MIY C1 C1 C 0 1 N N N 169.984 126.577 27.480 ? ? ? C1 MIY 5 MIY O1 O1 O 0 1 N N N 169.986 127.677 26.928 ? ? ? O1 MIY 6 MIY C3 C3 C 0 1 N N N 169.650 124.146 27.404 ? ? ? C3 MIY 7 MIY O2 O2 O 0 1 N N N 169.610 122.998 26.696 ? ? ? O2 MIY 8 MIY C4 C4 C 0 1 N N S 169.646 124.032 28.974 ? ? ? C4 MIY 9 MIY N1 N1 N 0 1 N N N 170.572 122.948 29.612 ? ? ? N1 MIY 10 MIY C20 C20 C 0 1 N N N 171.021 123.239 30.998 ? ? ? C20 MIY 11 MIY C19 C19 C 0 1 N N N 171.706 122.378 28.813 ? ? ? C19 MIY 12 MIY C5 C5 C 0 1 N N S 169.526 125.430 29.685 ? ? ? C5 MIY 13 MIY C18 C18 C 0 1 N N S 170.403 126.444 28.946 ? ? ? C18 MIY 14 MIY O7 O7 O 0 1 N N N 171.787 126.035 28.872 ? ? ? O7 MIY 15 MIY C17 C17 C 0 1 N N N 170.380 127.707 29.794 ? ? ? C17 MIY 16 MIY O6 O6 O 0 1 N N N 171.585 128.279 29.893 ? ? ? O6 MIY 17 MIY C16 C16 C 0 1 N N N 169.300 128.216 30.451 ? ? ? C16 MIY 18 MIY C7 C7 C 0 1 N N R 168.045 127.410 30.663 ? ? ? C7 MIY 19 MIY C6 C6 C 0 1 N N N 168.100 126.045 29.912 ? ? ? C6 MIY 20 MIY C15 C15 C 0 1 N N N 169.333 129.617 30.948 ? ? ? C15 MIY 21 MIY O5 O5 O 0 1 N N N 170.331 130.341 30.983 ? ? ? O5 MIY 22 MIY C14 C14 C 0 1 Y N N 168.086 130.283 31.363 ? ? ? C14 MIY 23 MIY C9 C9 C 0 1 Y N N 166.900 129.688 30.998 ? ? ? C9 MIY 24 MIY C8 C8 C 0 1 N N N 166.895 128.354 30.218 ? ? ? C8 MIY 25 MIY C13 C13 C 0 1 Y N N 168.175 131.492 32.069 ? ? ? C13 MIY 26 MIY O4 O4 O 0 1 N N N 169.410 132.031 32.412 ? ? ? O4 MIY 27 MIY C12 C12 C 0 1 Y N N 167.007 132.153 32.458 ? ? ? C12 MIY 28 MIY C11 C11 C 0 1 Y N N 165.809 131.571 32.113 ? ? ? C11 MIY 29 MIY C10 C10 C 0 1 Y N N 165.762 130.366 31.397 ? ? ? C10 MIY 30 MIY N7 N7 N 0 1 N N N 164.517 129.917 31.043 ? ? ? N7 MIY 31 MIY CN7 CN7 C 0 1 N N N 164.283 130.648 29.779 ? ? ? CN7 MIY 32 MIY C71 C71 C 0 1 N N N 163.594 130.387 32.085 ? ? ? C71 MIY 33 MIY HN21 1HN2 H 0 0 N N N 167.655 126.812 25.399 ? ? ? HN21 MIY 34 MIY HN22 2HN2 H 0 0 N N N 168.318 126.398 23.804 ? ? ? HN22 MIY 35 MIY HO2 HO2 H 0 1 N N N 169.601 123.198 25.767 ? ? ? HO2 MIY 36 MIY H4 H4 H 0 1 N N N 168.694 123.542 29.225 ? ? ? H4 MIY 37 MIY H201 1H20 H 0 0 N N N 170.693 122.430 31.667 ? ? ? H201 MIY 38 MIY H202 2H20 H 0 0 N N N 170.584 124.192 31.332 ? ? ? H202 MIY 39 MIY H203 3H20 H 0 0 N N N 172.118 123.311 31.021 ? ? ? H203 MIY 40 MIY H191 1H19 H 0 0 N N N 172.003 121.408 29.238 ? ? ? H191 MIY 41 MIY H192 2H19 H 0 0 N N N 172.561 123.070 28.845 ? ? ? H192 MIY 42 MIY H193 3H19 H 0 0 N N N 171.386 122.238 27.770 ? ? ? H193 MIY 43 MIY H5 H5 H 0 1 N N N 169.863 125.215 30.710 ? ? ? H5 MIY 44 MIY HO7 HO7 H 0 1 N N N 172.043 125.945 27.962 ? ? ? HO7 MIY 45 MIY HO6 HO6 H 0 1 N N N 171.944 128.415 29.024 ? ? ? HO6 MIY 46 MIY H7 H7 H 0 1 N N N 167.898 127.102 31.709 ? ? ? H7 MIY 47 MIY H61 1H6 H 0 1 N N N 167.569 125.330 30.557 ? ? ? H61 MIY 48 MIY H62 2H6 H 0 1 N N N 167.651 126.201 28.920 ? ? ? H62 MIY 49 MIY H81 1H8 H 0 1 N N N 165.941 127.846 30.422 ? ? ? H81 MIY 50 MIY H82 2H8 H 0 1 N N N 167.017 128.574 29.147 ? ? ? H82 MIY 51 MIY HO4 HO4 H 0 1 N N N 169.931 132.154 31.627 ? ? ? HO4 MIY 52 MIY H12 H12 H 0 1 N N N 167.043 133.082 33.007 ? ? ? H12 MIY 53 MIY H11 H11 H 0 1 N N N 164.886 132.052 32.400 ? ? ? H11 MIY 54 MIY HN71 1HN7 H 0 0 N N N 163.338 130.309 29.329 ? ? ? HN71 MIY 55 MIY HN72 2HN7 H 0 0 N N N 165.112 130.451 29.083 ? ? ? HN72 MIY 56 MIY HN73 3HN7 H 0 0 N N N 164.225 131.727 29.984 ? ? ? HN73 MIY 57 MIY H711 1H71 H 0 0 N N N 162.785 129.653 32.216 ? ? ? H711 MIY 58 MIY H712 2H71 H 0 0 N N N 163.166 131.355 31.786 ? ? ? H712 MIY 59 MIY H713 3H71 H 0 0 N N N 164.139 130.504 33.033 ? ? ? H713 MIY 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MIY O8 C21 DOUB N N 1 MIY C21 N2 SING N N 2 MIY C21 C2 SING N N 3 MIY N2 HN21 SING N N 4 MIY N2 HN22 SING N N 5 MIY C2 C1 SING N N 6 MIY C2 C3 DOUB N N 7 MIY C1 O1 DOUB N N 8 MIY C1 C18 SING N N 9 MIY C3 O2 SING N N 10 MIY C3 C4 SING N N 11 MIY O2 HO2 SING N N 12 MIY C4 N1 SING N N 13 MIY C4 C5 SING N N 14 MIY C4 H4 SING N N 15 MIY N1 C20 SING N N 16 MIY N1 C19 SING N N 17 MIY C20 H201 SING N N 18 MIY C20 H202 SING N N 19 MIY C20 H203 SING N N 20 MIY C19 H191 SING N N 21 MIY C19 H192 SING N N 22 MIY C19 H193 SING N N 23 MIY C5 C18 SING N N 24 MIY C5 C6 SING N N 25 MIY C5 H5 SING N N 26 MIY C18 O7 SING N N 27 MIY C18 C17 SING N N 28 MIY O7 HO7 SING N N 29 MIY C17 O6 SING N N 30 MIY C17 C16 DOUB N N 31 MIY O6 HO6 SING N N 32 MIY C16 C7 SING N N 33 MIY C16 C15 SING N N 34 MIY C7 C6 SING N N 35 MIY C7 C8 SING N N 36 MIY C7 H7 SING N N 37 MIY C6 H61 SING N N 38 MIY C6 H62 SING N N 39 MIY C15 O5 DOUB N N 40 MIY C15 C14 SING N N 41 MIY C14 C9 DOUB Y N 42 MIY C14 C13 SING Y N 43 MIY C9 C8 SING N N 44 MIY C9 C10 SING Y N 45 MIY C8 H81 SING N N 46 MIY C8 H82 SING N N 47 MIY C13 O4 SING N N 48 MIY C13 C12 DOUB Y N 49 MIY O4 HO4 SING N N 50 MIY C12 C11 SING Y N 51 MIY C12 H12 SING N N 52 MIY C11 C10 DOUB Y N 53 MIY C11 H11 SING N N 54 MIY C10 N7 SING N N 55 MIY N7 CN7 SING N N 56 MIY N7 C71 SING N N 57 MIY CN7 HN71 SING N N 58 MIY CN7 HN72 SING N N 59 MIY CN7 HN73 SING N N 60 MIY C71 H711 SING N N 61 MIY C71 H712 SING N N 62 MIY C71 H713 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MIY SMILES ACDLabs 10.04 "O=C(N)C1=C(O)C(N(C)C)C2CC4C(=C(O)C2(O)C1=O)C(=O)c3c(c(ccc3O)N(C)C)C4" MIY SMILES_CANONICAL CACTVS 3.341 "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(ccc(O)c4C(=O)C3=C(O)[C@]2(O)C(=O)C(=C1O)C(N)=O)N(C)C" MIY SMILES CACTVS 3.341 "CN(C)[CH]1[CH]2C[CH]3Cc4c(ccc(O)c4C(=O)C3=C(O)[C]2(O)C(=O)C(=C1O)C(N)=O)N(C)C" MIY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc(c2c1C[C@H]3C[C@H]4[C@@H](C(=C(C(=O)[C@]4(C(=C3C2=O)O)O)C(=O)N)O)N(C)C)O" MIY SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc(c2c1CC3CC4C(C(=C(C(=O)C4(C(=C3C2=O)O)O)C(=O)N)O)N(C)C)O" MIY InChI InChI 1.03 "InChI=1S/C23H27N3O7/c1-25(2)12-5-6-13(27)15-10(12)7-9-8-11-17(26(3)4)19(29)16(22(24)32)21(31)23(11,33)20(30)14(9)18(15)28/h5-6,9,11,17,27,29-30,33H,7-8H2,1-4H3,(H2,24,32)/t9-,11-,17-,23-/m0/s1" MIY InChIKey InChI 1.03 DYKFCLLONBREIL-KVUCHLLUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MIY "SYSTEMATIC NAME" ACDLabs 10.04 "(4S,4aS,5aR,12aS)-4,7-bis(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide" MIY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4S,4aS,5aR,12aS)-4,7-bis(dimethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-4a,5,5a,6-tetrahydro-4H-tetracene-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MIY "Create component" 2006-06-09 RCSB MIY "Modify descriptor" 2011-06-04 RCSB MIY "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MIY _pdbx_chem_comp_synonyms.name MINOCYCLINE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##