data_MJ7 # _chem_comp.id MJ7 _chem_comp.name "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 Cl N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-04 _chem_comp.pdbx_modified_date 2019-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 555.091 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MJ7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6OGN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MJ7 C8 C1 C 0 1 N N S 32.956 17.336 67.977 4.960 2.167 -0.473 C8 MJ7 1 MJ7 C13 C2 C 0 1 N N N 30.400 16.304 62.065 -2.762 2.104 1.327 C13 MJ7 2 MJ7 C12 C3 C 0 1 N N N 30.000 16.362 63.539 -1.702 2.094 0.223 C12 MJ7 3 MJ7 C11 C4 C 0 1 N N N 30.253 17.715 64.200 -0.308 2.126 0.854 C11 MJ7 4 MJ7 C10 C5 C 0 1 N N N 31.702 18.171 64.096 0.751 2.116 -0.249 C10 MJ7 5 MJ7 C9 C6 C 0 1 N N N 32.842 17.143 66.473 3.504 2.138 -0.943 C9 MJ7 6 MJ7 C25 C7 C 0 1 Y N N 33.380 11.067 57.256 -10.270 -0.515 -0.684 C25 MJ7 7 MJ7 C26 C8 C 0 1 Y N N 31.370 13.343 59.292 -7.105 0.840 0.821 C26 MJ7 8 MJ7 C19 C9 C 0 1 Y N N 31.976 12.976 58.089 -8.360 0.811 0.217 C19 MJ7 9 MJ7 C20 C10 C 0 1 Y N N 33.230 12.178 58.091 -9.014 -0.487 -0.080 C20 MJ7 10 MJ7 C21 C11 C 0 1 Y N N 34.318 12.552 58.870 -8.375 -1.682 0.244 C21 MJ7 11 MJ7 C22 C12 C 0 1 Y N N 35.527 11.878 58.792 -8.988 -2.887 -0.035 C22 MJ7 12 MJ7 C23 C13 C 0 1 Y N N 35.639 10.790 57.947 -10.235 -2.909 -0.635 C23 MJ7 13 MJ7 C24 C14 C 0 1 Y N N 34.577 10.373 57.183 -10.877 -1.724 -0.954 C24 MJ7 14 MJ7 C14 C15 C 0 1 N N N 29.571 14.488 60.639 -5.145 2.082 1.753 C14 MJ7 15 MJ7 C15 C16 C 0 1 Y N N 30.139 13.999 59.328 -6.501 2.050 1.096 C15 MJ7 16 MJ7 C16 C17 C 0 1 Y N N 29.490 14.257 58.123 -7.137 3.233 0.768 C16 MJ7 17 MJ7 C17 C18 C 0 1 Y N N 30.080 13.913 56.915 -8.381 3.211 0.164 C17 MJ7 18 MJ7 C18 C19 C 0 1 Y N N 31.321 13.295 56.895 -8.999 2.007 -0.106 C18 MJ7 19 MJ7 C2 C20 C 0 1 Y N N 35.277 21.044 69.514 8.166 -1.349 0.328 C2 MJ7 20 MJ7 C7 C21 C 0 1 N N S 31.690 17.820 68.701 5.902 2.262 -1.690 C7 MJ7 21 MJ7 C6 C22 C 0 1 N N R 31.964 19.312 68.940 6.799 1.006 -1.573 C6 MJ7 22 MJ7 C5 C23 C 0 1 N N R 33.484 19.313 69.130 6.657 0.643 -0.073 C5 MJ7 23 MJ7 C4 C24 C 0 1 Y N N 34.190 21.253 67.628 6.007 -1.781 0.198 C4 MJ7 24 MJ7 C3 C25 C 0 1 Y N N 35.923 21.923 68.658 7.937 -2.726 0.490 C3 MJ7 25 MJ7 CL CL1 CL 0 0 N N N 37.151 9.898 57.882 -11.001 -4.428 -0.984 CL MJ7 26 MJ7 N5 N1 N 0 1 N N N 30.606 14.929 61.588 -4.100 2.073 0.721 N5 MJ7 27 MJ7 S S1 S 0 1 N N N 32.424 18.723 65.670 2.403 2.155 0.499 S MJ7 28 MJ7 O1 O1 O 0 1 N N N 31.501 17.069 69.902 6.692 3.450 -1.619 O1 MJ7 29 MJ7 O O2 O 0 1 N N N 31.259 19.719 70.113 8.156 1.317 -1.896 O MJ7 30 MJ7 O2 O3 O 0 1 N N N 33.992 18.300 68.279 5.276 0.947 0.217 O2 MJ7 31 MJ7 N4 N2 N 0 1 Y N N 34.199 20.560 68.812 6.931 -0.780 0.142 N4 MJ7 32 MJ7 N2 N3 N 0 1 Y N N 35.637 20.733 70.756 9.413 -0.892 0.375 N2 MJ7 33 MJ7 C1 C26 C 0 1 Y N N 36.763 21.361 71.109 10.422 -1.715 0.571 C1 MJ7 34 MJ7 N1 N4 N 0 1 Y N N 37.522 22.187 70.386 10.256 -3.015 0.728 N1 MJ7 35 MJ7 N3 N5 N 0 1 Y N N 35.210 22.066 67.476 6.599 -2.922 0.401 N3 MJ7 36 MJ7 C C27 C 0 1 Y N N 37.139 22.482 69.118 9.046 -3.564 0.697 C MJ7 37 MJ7 N N6 N 0 1 N N N 37.967 23.227 68.362 8.882 -4.928 0.863 N MJ7 38 MJ7 H1 H1 H 0 1 N N N 33.238 16.368 68.417 5.122 3.019 0.187 H1 MJ7 39 MJ7 H2 H2 H 0 1 N N N 31.336 16.867 61.932 -2.631 1.230 1.964 H2 MJ7 40 MJ7 H3 H3 H 0 1 N N N 29.604 16.769 61.465 -2.655 3.009 1.926 H3 MJ7 41 MJ7 H4 H4 H 0 1 N N N 28.926 16.136 63.615 -1.809 1.190 -0.375 H4 MJ7 42 MJ7 H5 H5 H 0 1 N N N 30.575 15.598 64.083 -1.833 2.969 -0.414 H5 MJ7 43 MJ7 H6 H6 H 0 1 N N N 29.614 18.467 63.714 -0.201 3.031 1.453 H6 MJ7 44 MJ7 H7 H7 H 0 1 N N N 29.986 17.640 65.264 -0.178 1.252 1.491 H7 MJ7 45 MJ7 H8 H8 H 0 1 N N N 32.302 17.330 63.717 0.644 1.212 -0.848 H8 MJ7 46 MJ7 H9 H9 H 0 1 N N N 31.750 19.007 63.382 0.621 2.991 -0.886 H9 MJ7 47 MJ7 H10 H10 H 0 1 N N N 32.053 16.406 66.259 3.305 3.012 -1.563 H10 MJ7 48 MJ7 H11 H11 H 0 1 N N N 33.802 16.777 66.079 3.328 1.233 -1.524 H11 MJ7 49 MJ7 H12 H12 H 0 1 N N N 32.544 10.742 56.654 -10.769 0.409 -0.937 H12 MJ7 50 MJ7 H13 H13 H 0 1 N N N 31.869 13.112 60.222 -6.607 -0.084 1.077 H13 MJ7 51 MJ7 H14 H14 H 0 1 N N N 34.220 13.385 59.550 -7.402 -1.666 0.711 H14 MJ7 52 MJ7 H15 H15 H 0 1 N N N 36.371 12.199 59.384 -8.494 -3.814 0.216 H15 MJ7 53 MJ7 H16 H16 H 0 1 N N N 34.673 9.515 56.534 -11.850 -1.747 -1.421 H16 MJ7 54 MJ7 H17 H17 H 0 1 N N N 28.899 15.335 60.435 -5.055 2.987 2.355 H17 MJ7 55 MJ7 H18 H18 H 0 1 N N N 28.999 13.669 61.100 -5.031 1.207 2.393 H18 MJ7 56 MJ7 H19 H19 H 0 1 N N N 28.519 14.729 58.129 -6.661 4.178 0.985 H19 MJ7 57 MJ7 H20 H20 H 0 1 N N N 29.571 14.127 55.987 -8.874 4.138 -0.090 H20 MJ7 58 MJ7 H21 H21 H 0 1 N N N 31.786 13.058 55.949 -9.970 1.991 -0.578 H21 MJ7 59 MJ7 H22 H22 H 0 1 N N N 30.824 17.712 68.031 5.330 2.237 -2.617 H22 MJ7 60 MJ7 H23 H23 H 0 1 N N N 31.682 19.904 68.057 6.425 0.200 -2.205 H23 MJ7 61 MJ7 H24 H24 H 0 1 N N N 33.692 19.047 70.177 7.321 1.257 0.535 H24 MJ7 62 MJ7 H25 H25 H 0 1 N N N 33.413 21.140 66.887 4.941 -1.646 0.090 H25 MJ7 63 MJ7 H26 H26 H 0 1 N N N 30.598 14.314 62.376 -4.202 1.277 0.110 H26 MJ7 64 MJ7 H28 H28 H 0 1 N N N 30.717 17.372 70.346 7.303 3.560 -2.360 H28 MJ7 65 MJ7 H29 H29 H 0 1 N N N 31.419 20.641 70.275 8.281 1.636 -2.801 H29 MJ7 66 MJ7 H30 H30 H 0 1 N N N 37.105 21.175 72.116 11.423 -1.311 0.603 H30 MJ7 67 MJ7 H31 H31 H 0 1 N N N 38.784 23.458 68.890 7.994 -5.316 0.838 H31 MJ7 68 MJ7 H32 H32 H 0 1 N N N 38.232 22.709 67.548 9.656 -5.496 1.005 H32 MJ7 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MJ7 C18 C17 DOUB Y N 1 MJ7 C18 C19 SING Y N 2 MJ7 C17 C16 SING Y N 3 MJ7 C24 C25 DOUB Y N 4 MJ7 C24 C23 SING Y N 5 MJ7 C25 C20 SING Y N 6 MJ7 CL C23 SING N N 7 MJ7 C23 C22 DOUB Y N 8 MJ7 C19 C20 SING N N 9 MJ7 C19 C26 DOUB Y N 10 MJ7 C20 C21 DOUB Y N 11 MJ7 C16 C15 DOUB Y N 12 MJ7 C22 C21 SING Y N 13 MJ7 C26 C15 SING Y N 14 MJ7 C15 C14 SING N N 15 MJ7 C14 N5 SING N N 16 MJ7 N5 C13 SING N N 17 MJ7 C13 C12 SING N N 18 MJ7 C12 C11 SING N N 19 MJ7 C10 C11 SING N N 20 MJ7 C10 S SING N N 21 MJ7 S C9 SING N N 22 MJ7 C9 C8 SING N N 23 MJ7 N3 C4 DOUB Y N 24 MJ7 N3 C3 SING Y N 25 MJ7 C4 N4 SING Y N 26 MJ7 C8 O2 SING N N 27 MJ7 C8 C7 SING N N 28 MJ7 O2 C5 SING N N 29 MJ7 N C SING N N 30 MJ7 C3 C DOUB Y N 31 MJ7 C3 C2 SING Y N 32 MJ7 C7 C6 SING N N 33 MJ7 C7 O1 SING N N 34 MJ7 N4 C5 SING N N 35 MJ7 N4 C2 SING Y N 36 MJ7 C6 C5 SING N N 37 MJ7 C6 O SING N N 38 MJ7 C N1 SING Y N 39 MJ7 C2 N2 DOUB Y N 40 MJ7 N1 C1 DOUB Y N 41 MJ7 N2 C1 SING Y N 42 MJ7 C8 H1 SING N N 43 MJ7 C13 H2 SING N N 44 MJ7 C13 H3 SING N N 45 MJ7 C12 H4 SING N N 46 MJ7 C12 H5 SING N N 47 MJ7 C11 H6 SING N N 48 MJ7 C11 H7 SING N N 49 MJ7 C10 H8 SING N N 50 MJ7 C10 H9 SING N N 51 MJ7 C9 H10 SING N N 52 MJ7 C9 H11 SING N N 53 MJ7 C25 H12 SING N N 54 MJ7 C26 H13 SING N N 55 MJ7 C21 H14 SING N N 56 MJ7 C22 H15 SING N N 57 MJ7 C24 H16 SING N N 58 MJ7 C14 H17 SING N N 59 MJ7 C14 H18 SING N N 60 MJ7 C16 H19 SING N N 61 MJ7 C17 H20 SING N N 62 MJ7 C18 H21 SING N N 63 MJ7 C7 H22 SING N N 64 MJ7 C6 H23 SING N N 65 MJ7 C5 H24 SING N N 66 MJ7 C4 H25 SING N N 67 MJ7 N5 H26 SING N N 68 MJ7 O1 H28 SING N N 69 MJ7 O H29 SING N N 70 MJ7 C1 H30 SING N N 71 MJ7 N H31 SING N N 72 MJ7 N H32 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MJ7 SMILES ACDLabs 12.01 "C1(OC(C(C1O)O)n3c2ncnc(c2nc3)N)CSCCCCNCc5cc(c4ccc(cc4)Cl)ccc5" MJ7 InChI InChI 1.03 "InChI=1S/C27H31ClN6O3S/c28-20-8-6-18(7-9-20)19-5-3-4-17(12-19)13-30-10-1-2-11-38-14-21-23(35)24(36)27(37-21)34-16-33-22-25(29)31-15-32-26(22)34/h3-9,12,15-16,21,23-24,27,30,35-36H,1-2,10-11,13-14H2,(H2,29,31,32)/t21-,23-,24-,27-/m1/s1" MJ7 InChIKey InChI 1.03 UDFJXRJYAZANFF-VBHAUSMQSA-N MJ7 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCCCCNCc4cccc(c4)c5ccc(Cl)cc5)[C@@H](O)[C@H]3O" MJ7 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCCCCNCc4cccc(c4)c5ccc(Cl)cc5)[CH](O)[CH]3O" MJ7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)c2ccc(cc2)Cl)CNCCCCSC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" MJ7 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)c2ccc(cc2)Cl)CNCCCCSCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MJ7 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine" MJ7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[4-[[3-(4-chlorophenyl)phenyl]methylamino]butylsulfanylmethyl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MJ7 "Create component" 2019-04-04 RCSB MJ7 "Initial release" 2019-04-17 RCSB ##