data_MJO # _chem_comp.id MJO _chem_comp.name "N-(beta-L-Fucopyranosyl)-biphenyl-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]-3-phenyl-benzamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-27 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.374 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MJO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AIY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MJO C6 C1 C 0 1 N N N -39.087 -16.047 -5.186 -4.769 -2.422 1.743 C6 MJO 1 MJO C5 C2 C 0 1 N N S -37.814 -16.750 -4.777 -4.284 -1.651 0.514 C5 MJO 2 MJO C4 C3 C 0 1 N N S -36.896 -17.092 -5.963 -5.350 -0.634 0.096 C4 MJO 3 MJO C3 C4 C 0 1 N N R -35.577 -17.690 -5.516 -4.832 0.175 -1.097 C3 MJO 4 MJO C2 C5 C 0 1 N N S -34.965 -16.766 -4.496 -3.510 0.845 -0.711 C2 MJO 5 MJO C1 C6 C 0 1 N N S -35.944 -16.565 -3.336 -2.515 -0.229 -0.261 C1 MJO 6 MJO O5 O1 O 0 1 N N N -37.103 -15.928 -3.847 -3.071 -0.964 0.831 O5 MJO 7 MJO O2 O2 O 0 1 N N N -33.718 -17.339 -4.149 -2.981 1.543 -1.839 O2 MJO 8 MJO O3 O3 O 0 1 N N N -34.659 -17.834 -6.642 -5.790 1.175 -1.449 O3 MJO 9 MJO O4 O4 O 0 1 N N N -36.560 -15.941 -6.779 -5.624 0.247 1.187 O4 MJO 10 MJO N1 N1 N 0 1 N N N -35.407 -15.751 -2.314 -1.267 0.409 0.165 N1 MJO 11 MJO C7 C7 C 0 1 N N N -34.908 -16.239 -1.172 -0.083 -0.148 -0.153 C7 MJO 12 MJO O6 O5 O 0 1 N N N -34.687 -17.453 -1.023 -0.049 -1.181 -0.794 O6 MJO 13 MJO C8 C8 C 0 1 Y N N -34.600 -15.283 -0.079 1.177 0.496 0.277 C8 MJO 14 MJO C9 C9 C 0 1 Y N N -33.365 -15.294 0.550 1.141 1.679 1.017 C9 MJO 15 MJO C10 C10 C 0 1 Y N N -33.100 -14.455 1.605 2.317 2.281 1.418 C10 MJO 16 MJO C11 C11 C 0 1 Y N N -34.108 -13.632 2.091 3.535 1.717 1.091 C11 MJO 17 MJO C12 C12 C 0 1 Y N N -35.345 -13.592 1.463 3.584 0.536 0.352 C12 MJO 18 MJO C14 C13 C 0 1 Y N N -36.457 -12.746 1.986 4.894 -0.067 0.001 C14 MJO 19 MJO C15 C14 C 0 1 Y N N -36.216 -11.553 2.648 6.077 0.545 0.409 C15 MJO 20 MJO C16 C15 C 0 1 Y N N -37.256 -10.824 3.217 7.293 -0.020 0.080 C16 MJO 21 MJO C17 C16 C 0 1 Y N N -38.536 -11.268 3.068 7.337 -1.193 -0.652 C17 MJO 22 MJO C18 C17 C 0 1 Y N N -38.801 -12.483 2.466 6.166 -1.805 -1.060 C18 MJO 23 MJO C20 C18 C 0 1 Y N N -37.750 -13.212 1.928 4.945 -1.251 -0.732 C20 MJO 24 MJO C13 C19 C 0 1 Y N N -35.578 -14.421 0.391 2.403 -0.080 -0.051 C13 MJO 25 MJO H1 H1 H 0 1 N N N -39.692 -15.834 -4.292 -4.949 -1.725 2.562 H1 MJO 26 MJO H2 H2 H 0 1 N N N -38.838 -15.103 -5.693 -5.694 -2.946 1.502 H2 MJO 27 MJO H3 H3 H 0 1 N N N -39.658 -16.692 -5.870 -4.010 -3.145 2.042 H3 MJO 28 MJO H4 H4 H 0 1 N N N -38.090 -17.694 -4.285 -4.104 -2.347 -0.305 H4 MJO 29 MJO H5 H5 H 0 1 N N N -37.414 -17.834 -6.588 -6.262 -1.159 -0.188 H5 MJO 30 MJO H6 H6 H 0 1 N N N -35.762 -18.671 -5.054 -4.670 -0.490 -1.946 H6 MJO 31 MJO H7 H7 H 0 1 N N N -34.799 -15.789 -4.973 -3.682 1.547 0.104 H7 MJO 32 MJO H8 H8 H 0 1 N N N -36.208 -17.553 -2.930 -2.312 -0.906 -1.090 H8 MJO 33 MJO H9 H9 H 0 1 N N N -33.286 -16.792 -3.503 -2.142 1.992 -1.666 H9 MJO 34 MJO H10 H10 H 0 1 N N N -33.841 -18.210 -6.338 -5.527 1.726 -2.198 H10 MJO 35 MJO H11 H11 H 0 1 N N N -37.358 -15.527 -7.087 -5.957 -0.199 1.978 H11 MJO 36 MJO H12 H12 H 0 1 N N N -35.399 -14.760 -2.451 -1.294 1.234 0.676 H12 MJO 37 MJO H13 H13 H 0 1 N N N -32.599 -15.973 0.205 0.192 2.124 1.276 H13 MJO 38 MJO H14 H14 H 0 1 N N N -32.117 -14.435 2.052 2.284 3.196 1.990 H14 MJO 39 MJO H15 H15 H 0 1 N N N -33.928 -13.020 2.962 4.451 2.193 1.408 H15 MJO 40 MJO H16 H16 H 0 1 N N N -35.204 -11.183 2.724 6.043 1.461 0.981 H16 MJO 41 MJO H17 H17 H 0 1 N N N -37.052 -9.919 3.769 8.210 0.454 0.396 H17 MJO 42 MJO H18 H18 H 0 1 N N N -39.355 -10.661 3.426 8.290 -1.632 -0.908 H18 MJO 43 MJO H19 H19 H 0 1 N N N -39.812 -12.860 2.415 6.206 -2.720 -1.632 H19 MJO 44 MJO H20 H20 H 0 1 N N N -37.951 -14.162 1.455 4.030 -1.732 -1.047 H20 MJO 45 MJO H21 H21 H 0 1 N N N -36.543 -14.400 -0.094 2.437 -0.998 -0.619 H21 MJO 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MJO O4 C4 SING N N 1 MJO O3 C3 SING N N 2 MJO C4 C3 SING N N 3 MJO C4 C5 SING N N 4 MJO C3 C2 SING N N 5 MJO C6 C5 SING N N 6 MJO C5 O5 SING N N 7 MJO C2 O2 SING N N 8 MJO C2 C1 SING N N 9 MJO O5 C1 SING N N 10 MJO C1 N1 SING N N 11 MJO N1 C7 SING N N 12 MJO C7 O6 DOUB N N 13 MJO C7 C8 SING N N 14 MJO C8 C13 DOUB Y N 15 MJO C8 C9 SING Y N 16 MJO C13 C12 SING Y N 17 MJO C9 C10 DOUB Y N 18 MJO C12 C14 SING N N 19 MJO C12 C11 DOUB Y N 20 MJO C10 C11 SING Y N 21 MJO C20 C14 DOUB Y N 22 MJO C20 C18 SING Y N 23 MJO C14 C15 SING Y N 24 MJO C18 C17 DOUB Y N 25 MJO C15 C16 DOUB Y N 26 MJO C17 C16 SING Y N 27 MJO C6 H1 SING N N 28 MJO C6 H2 SING N N 29 MJO C6 H3 SING N N 30 MJO C5 H4 SING N N 31 MJO C4 H5 SING N N 32 MJO C3 H6 SING N N 33 MJO C2 H7 SING N N 34 MJO C1 H8 SING N N 35 MJO O2 H9 SING N N 36 MJO O3 H10 SING N N 37 MJO O4 H11 SING N N 38 MJO N1 H12 SING N N 39 MJO C9 H13 SING N N 40 MJO C10 H14 SING N N 41 MJO C11 H15 SING N N 42 MJO C15 H16 SING N N 43 MJO C16 H17 SING N N 44 MJO C17 H18 SING N N 45 MJO C18 H19 SING N N 46 MJO C20 H20 SING N N 47 MJO C13 H21 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MJO InChI InChI 1.06 "InChI=1S/C19H21NO5/c1-11-15(21)16(22)17(23)19(25-11)20-18(24)14-9-5-8-13(10-14)12-6-3-2-4-7-12/h2-11,15-17,19,21-23H,1H3,(H,20,24)/t11-,15+,16+,17-,19-/m0/s1" MJO InChIKey InChI 1.06 KFRIUGARMXQWFO-QFFBLRJASA-N MJO SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@H](NC(=O)c2cccc(c2)c3ccccc3)[C@@H](O)[C@H](O)[C@@H]1O" MJO SMILES CACTVS 3.385 "C[CH]1O[CH](NC(=O)c2cccc(c2)c3ccccc3)[CH](O)[CH](O)[CH]1O" MJO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)NC(=O)c2cccc(c2)c3ccccc3)O)O)O" MJO SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)NC(=O)c2cccc(c2)c3ccccc3)O)O)O" # _pdbx_chem_comp_identifier.comp_id MJO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]-3-phenyl-benzamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MJO _pdbx_chem_comp_synonyms.name "~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]-3-phenyl-benzamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MJO "Create component" 2022-07-27 PDBE MJO "Initial release" 2022-11-02 RCSB MJO "Modify descriptor" 2023-09-23 RCSB #