data_MK6 # _chem_comp.id MK6 _chem_comp.name ;(5aR,6S,6aS)-3-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy][1,1'-biphenyl]-3-yl}methoxy)-5,5a,6,6a-tetrahydrocyclopropa[4,5]cyclopenta[1,2-c]pyridine-6-carboxylic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H31 N O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-11-22 _chem_comp.pdbx_modified_date 2017-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.625 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MK6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5TZR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MK6 O5 O1 O 0 1 N N N -39.185 -3.303 59.291 10.909 -3.197 -0.330 O5 MK6 1 MK6 C28 C1 C 0 1 N N N -39.878 -3.146 60.308 10.633 -2.128 0.161 C28 MK6 2 MK6 O4 O2 O 0 1 N N N -39.445 -2.761 61.422 11.464 -1.564 1.051 O4 MK6 3 MK6 C27 C2 C 0 1 N N S -41.362 -3.412 60.141 9.359 -1.424 -0.232 C27 MK6 4 MK6 C2 C3 C 0 1 N N R -42.119 -4.117 61.252 8.460 -2.114 -1.261 C2 MK6 5 MK6 C1 C4 C 0 1 N N S -42.330 -2.646 61.037 8.039 -2.055 0.214 C1 MK6 6 MK6 C C5 C 0 1 Y N N -43.715 -2.524 60.476 6.804 -1.193 0.287 C MK6 7 MK6 C7 C6 C 0 1 Y N N -44.418 -1.438 59.986 6.033 -0.815 1.373 C7 MK6 8 MK6 N N1 N 0 1 Y N N -45.612 -1.514 59.385 4.975 -0.044 1.218 N MK6 9 MK6 C6 C7 C 0 1 Y N N -46.165 -2.712 59.303 4.607 0.399 0.027 C6 MK6 10 MK6 C5 C8 C 0 1 Y N N -45.592 -3.872 59.800 5.334 0.060 -1.106 C5 MK6 11 MK6 C4 C9 C 0 1 Y N N -44.330 -3.768 60.374 6.452 -0.749 -0.975 C4 MK6 12 MK6 C3 C10 C 0 1 N N N -43.420 -4.859 60.877 7.438 -1.264 -2.029 C3 MK6 13 MK6 O O3 O 0 1 N N N -47.348 -2.796 58.650 3.511 1.191 -0.087 O MK6 14 MK6 C8 C11 C 0 1 N N N -48.061 -1.717 58.032 2.807 1.502 1.117 C8 MK6 15 MK6 C9 C12 C 0 1 Y N N -49.393 -2.157 57.506 1.628 2.384 0.795 C9 MK6 16 MK6 C26 C13 C 0 1 Y N N -49.530 -2.721 56.244 1.775 3.760 0.792 C26 MK6 17 MK6 C25 C14 C 0 1 Y N N -50.787 -2.949 55.703 0.697 4.575 0.498 C25 MK6 18 MK6 C24 C15 C 0 1 Y N N -51.923 -2.619 56.425 -0.532 4.019 0.205 C24 MK6 19 MK6 C11 C16 C 0 1 Y N N -51.816 -2.077 57.710 -0.686 2.635 0.206 C11 MK6 20 MK6 C10 C17 C 0 1 Y N N -50.540 -1.870 58.236 0.405 1.818 0.498 C10 MK6 21 MK6 C12 C18 C 0 1 Y N N -53.026 -1.675 58.493 -2.005 2.032 -0.108 C12 MK6 22 MK6 C17 C19 C 0 1 Y N N -53.385 -0.312 58.575 -2.557 2.183 -1.378 C17 MK6 23 MK6 C18 C20 C 0 1 N N N -52.626 0.759 57.834 -1.815 2.960 -2.436 C18 MK6 24 MK6 C16 C21 C 0 1 Y N N -54.466 0.058 59.370 -3.783 1.622 -1.667 C16 MK6 25 MK6 C15 C22 C 0 1 Y N N -55.193 -0.899 60.058 -4.467 0.907 -0.693 C15 MK6 26 MK6 C14 C23 C 0 1 Y N N -54.854 -2.241 59.969 -3.920 0.755 0.573 C14 MK6 27 MK6 C13 C24 C 0 1 Y N N -53.766 -2.646 59.202 -2.691 1.308 0.866 C13 MK6 28 MK6 C23 C25 C 0 1 N N N -53.378 -4.106 59.201 -2.094 1.136 2.239 C23 MK6 29 MK6 O1 O4 O 0 1 N N N -56.283 -0.389 60.716 -5.675 0.355 -0.980 O1 MK6 30 MK6 C19 C26 C 0 1 N N N -57.229 -1.304 61.289 -6.324 -0.367 0.068 C19 MK6 31 MK6 C20 C27 C 0 1 N N N -57.591 -0.830 62.665 -7.662 -0.911 -0.439 C20 MK6 32 MK6 C21 C28 C 0 1 N N N -58.425 0.416 62.582 -8.356 -1.684 0.683 C21 MK6 33 MK6 S S1 S 0 1 N N N -59.513 0.599 63.978 -9.942 -2.329 0.082 S MK6 34 MK6 O2 O5 O 0 1 N N N -60.314 -0.593 64.085 -10.798 -1.231 -0.203 O2 MK6 35 MK6 O3 O6 O 0 1 N N N -60.210 1.852 63.841 -9.684 -3.290 -0.933 O3 MK6 36 MK6 C22 C29 C 0 1 N N N -58.445 0.693 65.366 -10.576 -3.191 1.547 C22 MK6 37 MK6 H1 H1 H 0 1 N N N -38.509 -2.610 61.363 12.271 -2.051 1.269 H1 MK6 38 MK6 H2 H2 H 0 1 N N N -41.707 -3.611 59.116 9.413 -0.336 -0.260 H2 MK6 39 MK6 H3 H3 H 0 1 N N N -41.564 -4.454 62.140 8.792 -3.043 -1.724 H3 MK6 40 MK6 H4 H4 H 0 1 N N N -41.950 -1.912 61.762 8.064 -2.949 0.837 H4 MK6 41 MK6 H5 H5 H 0 1 N N N -43.972 -0.460 60.096 6.301 -1.158 2.362 H5 MK6 42 MK6 H6 H6 H 0 1 N N N -46.106 -4.820 59.744 5.033 0.423 -2.078 H6 MK6 43 MK6 H7 H7 H 0 1 N N N -43.854 -5.356 61.757 7.926 -0.424 -2.523 H7 MK6 44 MK6 H8 H8 H 0 1 N N N -43.232 -5.605 60.091 6.912 -1.875 -2.762 H8 MK6 45 MK6 H9 H9 H 0 1 N N N -47.461 -1.326 57.197 2.455 0.581 1.581 H9 MK6 46 MK6 H10 H10 H 0 1 N N N -48.217 -0.922 58.776 3.474 2.023 1.803 H10 MK6 47 MK6 H11 H11 H 0 1 N N N -48.649 -2.985 55.678 2.735 4.198 1.021 H11 MK6 48 MK6 H12 H12 H 0 1 N N N -50.880 -3.384 54.719 0.818 5.648 0.498 H12 MK6 49 MK6 H13 H13 H 0 1 N N N -52.899 -2.782 55.992 -1.373 4.657 -0.025 H13 MK6 50 MK6 H14 H14 H 0 1 N N N -50.441 -1.476 59.237 0.292 0.744 0.497 H14 MK6 51 MK6 H15 H15 H 0 1 N N N -53.074 0.906 56.840 -1.170 2.284 -2.997 H15 MK6 52 MK6 H16 H16 H 0 1 N N N -52.674 1.701 58.400 -2.531 3.425 -3.114 H16 MK6 53 MK6 H17 H17 H 0 1 N N N -51.576 0.452 57.721 -1.209 3.731 -1.962 H17 MK6 54 MK6 H18 H18 H 0 1 N N N -54.740 1.100 59.451 -4.212 1.739 -2.651 H18 MK6 55 MK6 H19 H19 H 0 1 N N N -55.439 -2.978 60.499 -4.455 0.198 1.329 H19 MK6 56 MK6 H20 H20 H 0 1 N N N -52.670 -4.298 60.021 -2.417 1.956 2.881 H20 MK6 57 MK6 H21 H21 H 0 1 N N N -54.277 -4.724 59.340 -2.426 0.189 2.664 H21 MK6 58 MK6 H22 H22 H 0 1 N N N -52.904 -4.359 58.241 -1.006 1.140 2.165 H22 MK6 59 MK6 H23 H23 H 0 1 N N N -58.132 -1.342 60.662 -5.691 -1.196 0.383 H23 MK6 60 MK6 H24 H24 H 0 1 N N N -56.782 -2.307 61.350 -6.500 0.298 0.913 H24 MK6 61 MK6 H25 H25 H 0 1 N N N -58.162 -1.616 63.181 -8.295 -0.081 -0.755 H25 MK6 62 MK6 H26 H26 H 0 1 N N N -56.671 -0.615 63.229 -7.486 -1.576 -1.285 H26 MK6 63 MK6 H27 H27 H 0 1 N N N -57.755 1.287 62.540 -7.723 -2.514 0.999 H27 MK6 64 MK6 H28 H28 H 0 1 N N N -59.031 0.375 61.665 -8.532 -1.019 1.528 H28 MK6 65 MK6 H29 H29 H 0 1 N N N -59.043 0.808 66.282 -10.686 -2.481 2.367 H29 MK6 66 MK6 H30 H30 H 0 1 N N N -57.847 -0.228 65.432 -11.545 -3.634 1.317 H30 MK6 67 MK6 H31 H31 H 0 1 N N N -57.774 1.558 65.255 -9.877 -3.976 1.837 H31 MK6 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MK6 C25 C26 DOUB Y N 1 MK6 C25 C24 SING Y N 2 MK6 C26 C9 SING Y N 3 MK6 C24 C11 DOUB Y N 4 MK6 C9 C8 SING N N 5 MK6 C9 C10 DOUB Y N 6 MK6 C11 C10 SING Y N 7 MK6 C11 C12 SING N N 8 MK6 C18 C17 SING N N 9 MK6 C8 O SING N N 10 MK6 C12 C17 DOUB Y N 11 MK6 C12 C13 SING Y N 12 MK6 C17 C16 SING Y N 13 MK6 O C6 SING N N 14 MK6 C23 C13 SING N N 15 MK6 C13 C14 DOUB Y N 16 MK6 O5 C28 DOUB N N 17 MK6 C6 N DOUB Y N 18 MK6 C6 C5 SING Y N 19 MK6 C16 C15 DOUB Y N 20 MK6 N C7 SING Y N 21 MK6 C5 C4 DOUB Y N 22 MK6 C14 C15 SING Y N 23 MK6 C7 C DOUB Y N 24 MK6 C15 O1 SING N N 25 MK6 C27 C28 SING N N 26 MK6 C27 C1 SING N N 27 MK6 C27 C2 SING N N 28 MK6 C28 O4 SING N N 29 MK6 C4 C SING Y N 30 MK6 C4 C3 SING N N 31 MK6 C C1 SING N N 32 MK6 O1 C19 SING N N 33 MK6 C3 C2 SING N N 34 MK6 C1 C2 SING N N 35 MK6 C19 C20 SING N N 36 MK6 C21 C20 SING N N 37 MK6 C21 S SING N N 38 MK6 O3 S DOUB N N 39 MK6 S O2 DOUB N N 40 MK6 S C22 SING N N 41 MK6 O4 H1 SING N N 42 MK6 C27 H2 SING N N 43 MK6 C2 H3 SING N N 44 MK6 C1 H4 SING N N 45 MK6 C7 H5 SING N N 46 MK6 C5 H6 SING N N 47 MK6 C3 H7 SING N N 48 MK6 C3 H8 SING N N 49 MK6 C8 H9 SING N N 50 MK6 C8 H10 SING N N 51 MK6 C26 H11 SING N N 52 MK6 C25 H12 SING N N 53 MK6 C24 H13 SING N N 54 MK6 C10 H14 SING N N 55 MK6 C18 H15 SING N N 56 MK6 C18 H16 SING N N 57 MK6 C18 H17 SING N N 58 MK6 C16 H18 SING N N 59 MK6 C14 H19 SING N N 60 MK6 C23 H20 SING N N 61 MK6 C23 H21 SING N N 62 MK6 C23 H22 SING N N 63 MK6 C19 H23 SING N N 64 MK6 C19 H24 SING N N 65 MK6 C20 H25 SING N N 66 MK6 C20 H26 SING N N 67 MK6 C21 H27 SING N N 68 MK6 C21 H28 SING N N 69 MK6 C22 H29 SING N N 70 MK6 C22 H30 SING N N 71 MK6 C22 H31 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MK6 SMILES ACDLabs 12.01 "O=C(O)C1C2C1Cc3c2cnc(c3)OCc4cc(ccc4)c5c(cc(OCCCS(=O)(C)=O)cc5C)C" MK6 InChI InChI 1.03 "InChI=1S/C29H31NO6S/c1-17-10-22(35-8-5-9-37(3,33)34)11-18(2)26(17)20-7-4-6-19(12-20)16-36-25-14-21-13-23-27(24(21)15-30-25)28(23)29(31)32/h4,6-7,10-12,14-15,23,27-28H,5,8-9,13,16H2,1-3H3,(H,31,32)/t23-,27-,28+/m1/s1" MK6 InChIKey InChI 1.03 CODQKEMYZZKQAE-QPVYNBJUSA-N MK6 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(OCCC[S](C)(=O)=O)cc(C)c1c2cccc(COc3cc4C[C@H]5[C@@H]([C@H]5c4cn3)C(O)=O)c2" MK6 SMILES CACTVS 3.385 "Cc1cc(OCCC[S](C)(=O)=O)cc(C)c1c2cccc(COc3cc4C[CH]5[CH]([CH]5c4cn3)C(O)=O)c2" MK6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(cc(c1c2cccc(c2)COc3cc4c(cn3)[C@H]5[C@@H](C4)[C@@H]5C(=O)O)C)OCCCS(=O)(=O)C" MK6 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc(cc(c1c2cccc(c2)COc3cc4c(cn3)C5C(C4)C5C(=O)O)C)OCCCS(=O)(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MK6 "SYSTEMATIC NAME" ACDLabs 12.01 ;(5aR,6S,6aS)-3-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy][1,1'-biphenyl]-3-yl}methoxy)-5,5a,6,6a-tetrahydrocyclopropa[4,5]cyclopenta[1,2-c]pyridine-6-carboxylic acid ; MK6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},3~{S},4~{R})-8-[[3-[2,6-dimethyl-4-(3-methylsulfonylpropoxy)phenyl]phenyl]methoxy]-9-azatricyclo[4.4.0.0^{2,4}]deca-1(10),6,8-triene-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MK6 "Create component" 2016-11-22 RCSB MK6 "Initial release" 2017-06-07 RCSB #