data_MK7
# 
_chem_comp.id                                    MK7 
_chem_comp.name                                  "(2S,5R)-1-formyl-N-(piperidin-4-yl)-5-[(sulfooxy)amino]piperidine-2-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H22 N4 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "MK-7655, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        350.391 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MK7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NK3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MK7 C4  C4  C 0 1 N N N N N N 3.610  13.774 19.452 1.464  0.912  -1.215 C4  MK7 1  
MK7 C5  C5  C 0 1 N N N N N N 9.446  17.856 17.398 -6.761 1.620  -0.090 C5  MK7 2  
MK7 C6  C6  C 0 1 N N N N N N 10.760 15.927 17.920 -6.547 -0.687 0.618  C6  MK7 3  
MK7 C7  C7  C 0 1 N N N N N N 5.122  11.979 20.210 1.416  -1.158 0.184  C7  MK7 4  
MK7 C8  C8  C 0 1 N N N N N N 5.499  10.647 18.185 -0.778 -2.243 0.164  C8  MK7 5  
MK7 C10 C10 C 0 1 N N S N N N 5.612  13.029 17.986 -0.697 0.177  -0.199 C10 MK7 6  
MK7 C1  C1  C 0 1 N N N N N N 4.303  13.817 18.093 -0.049 0.823  -1.428 C1  MK7 7  
MK7 C2  C2  C 0 1 N N N N N N 8.267  16.968 17.036 -5.264 1.860  0.114  C2  MK7 8  
MK7 C3  C3  C 0 1 N N N N N N 9.645  14.986 17.494 -5.043 -0.517 0.843  C3  MK7 9  
MK7 C9  C9  C 0 1 N N N N N N 8.330  15.669 17.811 -4.506 0.549  -0.116 C9  MK7 10 
MK7 C11 C11 C 0 1 N N N N N N 6.826  13.822 18.431 -2.166 -0.039 -0.457 C11 MK7 11 
MK7 C12 C12 C 0 1 N N R N N N 3.683  12.432 20.165 2.040  -0.496 -1.049 C12 MK7 12 
MK7 N13 N13 N 0 1 N N N N N N 10.699 17.155 17.134 -7.226 0.594  0.851  N13 MK7 13 
MK7 N14 N14 N 0 1 N N N N N N 7.180  14.820 17.551 -3.078 0.758  0.135  N14 MK7 14 
MK7 N15 N15 N 0 1 N N N N N N 3.016  11.353 19.443 3.497  -0.412 -0.876 N15 MK7 15 
MK7 N16 N16 N 0 1 N N N N N N 5.593  11.845 18.836 -0.046 -1.116 0.054  N16 MK7 16 
MK7 O17 O17 O 0 1 N N N N N N 1.749  9.465  17.916 5.483  1.120  1.826  O17 MK7 17 
MK7 O18 O18 O 0 1 N N N N N N 5.516  10.515 16.961 -0.225 -3.317 0.274  O18 MK7 18 
MK7 O19 O19 O 0 1 N N N N N N 7.450  13.577 19.456 -2.528 -0.929 -1.196 O19 MK7 19 
MK7 O20 O20 O 0 1 N N N N N N -0.444 10.703 18.214 5.873  1.504  -0.467 O20 MK7 20 
MK7 O21 O21 O 0 1 N N N N N N 1.499  11.701 16.944 5.908  -0.750 0.222  O21 MK7 21 
MK7 O22 O22 O 0 1 N N N N N N 1.585  11.566 19.422 3.840  0.377  0.307  O22 MK7 22 
MK7 S23 S23 S 0 1 N N N N N N 0.985  10.895 18.040 5.336  0.508  0.551  S23 MK7 23 
MK7 H1  H1  H 0 1 N N N N N N 4.078  14.531 20.099 1.924  1.393  -2.077 H1  MK7 24 
MK7 H2  H2  H 0 1 N N N N N N 2.549  14.025 19.303 1.670  1.497  -0.318 H2  MK7 25 
MK7 H3  H3  H 0 1 N N N N N N 9.409  18.775 16.795 -7.305 2.548  0.087  H3  MK7 26 
MK7 H4  H4  H 0 1 N N N N N N 9.392  18.116 18.465 -6.940 1.284  -1.111 H4  MK7 27 
MK7 H5  H5  H 0 1 N N N N N N 11.732 15.438 17.758 -6.726 -1.013 -0.406 H5  MK7 28 
MK7 H6  H6  H 0 1 N N N N N N 10.645 16.170 18.987 -6.935 -1.435 1.310  H6  MK7 29 
MK7 H7  H7  H 0 1 N N N N N N 5.193  11.010 20.726 1.748  -2.194 0.250  H7  MK7 30 
MK7 H8  H8  H 0 1 N N N N N N 5.732  12.723 20.743 1.721  -0.618 1.081  H8  MK7 31 
MK7 H9  H9  H 0 1 N Y N N N N 5.403  9.755  18.786 -1.856 -2.190 0.154  H9  MK7 32 
MK7 H10 H10 H 0 1 N N N N N N 5.753  12.726 16.938 -0.569 0.827  0.666  H10 MK7 33 
MK7 H11 H11 H 0 1 N N N N N N 4.523  14.869 17.860 -0.456 1.824  -1.569 H11 MK7 34 
MK7 H12 H12 H 0 1 N N N N N N 3.604  13.414 17.345 -0.258 0.217  -2.310 H12 MK7 35 
MK7 H13 H13 H 0 1 N N N N N N 7.331  17.491 17.280 -4.915 2.611  -0.595 H13 MK7 36 
MK7 H14 H14 H 0 1 N N N N N N 8.295  16.749 15.958 -5.086 2.209  1.131  H14 MK7 37 
MK7 H15 H15 H 0 1 N N N N N N 9.720  14.039 18.048 -4.862 -0.205 1.872  H15 MK7 38 
MK7 H16 H16 H 0 1 N N N N N N 9.714  14.786 16.415 -4.537 -1.464 0.655  H16 MK7 39 
MK7 H17 H17 H 0 1 N N N N N N 8.338  15.922 18.882 -4.652 0.220  -1.145 H17 MK7 40 
MK7 H18 H18 H 0 1 N N N N N N 3.283  12.526 21.185 1.812  -1.089 -1.934 H18 MK7 41 
MK7 H19 H19 H 0 1 N N N N N N 10.753 16.929 16.161 -7.107 0.897  1.806  H19 MK7 42 
MK7 H21 H21 H 0 1 N N N N N N 6.639  14.962 16.722 -2.789 1.471  0.726  H21 MK7 43 
MK7 H22 H22 H 0 1 N N N N N N 3.213  10.483 19.896 3.938  -0.036 -1.702 H22 MK7 44 
MK7 H20 H20 H 0 1 N N N N N N -0.912 11.168 17.531 6.825  1.662  -0.398 H20 MK7 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MK7 O21 S23 DOUB N N 1  
MK7 O18 C8  DOUB N N 2  
MK7 C2  C5  SING N N 3  
MK7 C2  C9  SING N N 4  
MK7 N13 C5  SING N N 5  
MK7 N13 C6  SING N N 6  
MK7 C3  C9  SING N N 7  
MK7 C3  C6  SING N N 8  
MK7 N14 C9  SING N N 9  
MK7 N14 C11 SING N N 10 
MK7 O17 S23 DOUB N N 11 
MK7 C10 C1  SING N N 12 
MK7 C10 C11 SING N N 13 
MK7 C10 N16 SING N N 14 
MK7 S23 O20 SING N N 15 
MK7 S23 O22 SING N N 16 
MK7 C1  C4  SING N N 17 
MK7 C8  N16 SING N N 18 
MK7 C11 O19 DOUB N N 19 
MK7 N16 C7  SING N N 20 
MK7 O22 N15 SING N N 21 
MK7 N15 C12 SING N N 22 
MK7 C4  C12 SING N N 23 
MK7 C12 C7  SING N N 24 
MK7 C4  H1  SING N N 25 
MK7 C4  H2  SING N N 26 
MK7 C5  H3  SING N N 27 
MK7 C5  H4  SING N N 28 
MK7 C6  H5  SING N N 29 
MK7 C6  H6  SING N N 30 
MK7 C7  H7  SING N N 31 
MK7 C7  H8  SING N N 32 
MK7 C8  H9  SING N N 33 
MK7 C10 H10 SING N N 34 
MK7 C1  H11 SING N N 35 
MK7 C1  H12 SING N N 36 
MK7 C2  H13 SING N N 37 
MK7 C2  H14 SING N N 38 
MK7 C3  H15 SING N N 39 
MK7 C3  H16 SING N N 40 
MK7 C9  H17 SING N N 41 
MK7 C12 H18 SING N N 42 
MK7 N13 H19 SING N N 43 
MK7 N14 H21 SING N N 44 
MK7 N15 H22 SING N N 45 
MK7 O20 H20 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MK7 SMILES           ACDLabs              12.01 "O=CN2C(C(=O)NC1CCNCC1)CCC(NOS(=O)(=O)O)C2"                                                                                                      
MK7 InChI            InChI                1.03  "InChI=1S/C12H22N4O6S/c17-8-16-7-10(15-22-23(19,20)21)1-2-11(16)12(18)14-9-3-5-13-6-4-9/h8-11,13,15H,1-7H2,(H,14,18)(H,19,20,21)/t10-,11+/m1/s1" 
MK7 InChIKey         InChI                1.03  VGHMECNLFQGIJM-MNOVXSKESA-N                                                                                                                      
MK7 SMILES_CANONICAL CACTVS               3.385 "O[S](=O)(=O)ON[C@@H]1CC[C@H](N(C1)C=O)C(=O)NC2CCNCC2"                                                                                           
MK7 SMILES           CACTVS               3.385 "O[S](=O)(=O)ON[CH]1CC[CH](N(C1)C=O)C(=O)NC2CCNCC2"                                                                                              
MK7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1C[C@H](N(C[C@@H]1NOS(=O)(=O)O)C=O)C(=O)NC2CCNCC2"                                                                                             
MK7 SMILES           "OpenEye OEToolkits" 1.7.6 "C1CC(N(CC1NOS(=O)(=O)O)C=O)C(=O)NC2CCNCC2"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MK7 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,5R)-1-formyl-N-(piperidin-4-yl)-5-[(sulfooxy)amino]piperidine-2-carboxamide"         
MK7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(3R,6S)-1-methanoyl-6-(piperidin-4-ylcarbamoyl)piperidin-3-yl]amino] hydrogen sulfate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MK7 "Create component" 2013-11-27 RCSB 
MK7 "Initial release"  2014-02-19 RCSB 
MK7 "Modify synonyms"  2021-03-13 RCSB 
MK7 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      MK7 
_pdbx_chem_comp_synonyms.name         "MK-7655, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MK7 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#