data_MKX # _chem_comp.id MKX _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[6-[(4~{S})-4-[(1~{R})-1-oxidanylethyl]-2,5-bis(oxidanylidene)imidazolidin-1-yl]purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type ATOMN _chem_comp.formula "C15 H19 N6 O10 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ;cyclic N6-threonylcarbamoyladenosine 5'-monophosphate ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-26 _chem_comp.pdbx_modified_date 2024-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.319 _chem_comp.one_letter_code A _chem_comp.three_letter_code MKX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8HU1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MKX C10 C1 C 0 1 N N N N N N 178.108 195.738 260.956 -5.626 -0.472 0.002 C10 MKX 1 MKX C13 C2 C 0 1 N N N N N N 177.273 194.931 258.917 -4.166 1.057 -0.681 C13 MKX 2 MKX C14 C3 C 0 1 N N R N N N 175.127 196.051 259.241 -5.827 2.864 -0.187 C14 MKX 3 MKX C15 C4 C 0 1 N N N N N N 173.698 195.584 259.547 -7.281 3.294 -0.390 C15 MKX 4 MKX "C1'" C5 C 0 1 N N R N N N 184.455 195.128 259.900 1.589 -1.458 0.324 "C1'" MKX 5 MKX C12 C6 C 0 1 N N S N N N 176.106 195.074 259.833 -5.563 1.572 -0.963 C12 MKX 6 MKX C2 C7 C 0 1 Y N N N N N 181.027 195.288 257.048 -2.539 -2.886 1.355 C2 MKX 7 MKX "C2'" C8 C 0 1 N N R N N N 184.994 196.314 259.090 1.999 -2.411 -0.822 "C2'" MKX 8 MKX "C3'" C9 C 0 1 N N S N N N 185.636 197.176 260.174 3.507 -2.137 -1.016 "C3'" MKX 9 MKX C4 C10 C 0 1 Y N N N N N 182.051 195.230 259.009 -0.937 -1.495 0.476 C4 MKX 10 MKX "C4'" C11 C 0 1 N N R N N N 186.125 196.144 261.175 3.830 -1.052 0.034 "C4'" MKX 11 MKX C5 C12 C 0 1 Y N N N N N 180.835 195.261 259.626 -1.952 -0.627 0.031 C5 MKX 12 MKX "C5'" C13 C 0 1 N N N N N N 186.333 196.640 262.582 4.845 -0.054 -0.527 "C5'" MKX 13 MKX C6 C14 C 0 1 Y N N N N N 179.706 195.311 259.006 -3.284 -0.975 0.299 C6 MKX 14 MKX C8 C15 C 0 1 Y N N N N N 182.391 195.191 261.298 -0.054 0.238 -0.564 C8 MKX 15 MKX N1 N1 N 0 1 Y N N N N N 179.735 195.328 257.676 -3.525 -2.103 0.957 N1 MKX 16 MKX N11 N2 N 0 1 N N N N N N 176.631 195.588 261.134 -6.436 0.493 -0.469 N11 MKX 17 MKX N3 N3 N 0 1 Y N N N N N 182.271 195.238 257.738 -1.274 -2.602 1.127 N3 MKX 18 MKX N6 N4 N 0 1 N N N N N N 178.381 195.337 259.637 -4.332 -0.155 -0.116 N6 MKX 19 MKX N7 N5 N 0 1 Y N N N N N 181.159 195.228 260.972 -1.344 0.409 -0.595 N7 MKX 20 MKX N9 N6 N 0 1 Y N N N N N 182.992 195.187 260.091 0.247 -0.922 0.086 N9 MKX 21 MKX O10 O1 O 0 1 N N N N N N 178.846 196.128 261.792 -6.026 -1.512 0.487 O10 MKX 22 MKX O13 O2 O 0 1 N N N N N N 177.209 194.543 257.798 -3.117 1.618 -0.916 O13 MKX 23 MKX O14 O3 O 0 1 N N N N N N 175.336 197.331 259.792 -5.587 2.642 1.204 O14 MKX 24 MKX "O2'" O4 O 0 1 N N N N N N 185.978 195.826 258.192 1.781 -3.772 -0.443 "O2'" MKX 25 MKX "O3'" O5 O 0 1 N N N N N N 186.674 198.011 259.693 4.267 -3.321 -0.764 "O3'" MKX 26 MKX "O4'" O6 O 0 1 N N N N N N 185.084 195.141 261.162 2.568 -0.397 0.289 "O4'" MKX 27 MKX "O5'" O7 O 0 1 N N N N N N 185.110 197.066 263.160 5.218 0.872 0.496 "O5'" MKX 28 MKX OP3 O8 O 0 1 N Y N N N N 183.528 197.586 265.039 6.352 2.983 1.577 OP3 MKX 29 MKX OP2 O9 O 0 1 N N N N N N 186.100 198.007 265.254 7.724 1.444 -0.054 OP2 MKX 30 MKX P P1 P 0 1 N N N N N N 184.950 197.180 264.739 6.272 2.065 0.257 P MKX 31 MKX H1 H1 H 0 1 N N N N N N 175.262 196.077 258.150 -5.163 3.648 -0.549 H1 MKX 32 MKX H2 H2 H 0 1 N N N N N N 173.538 194.585 259.116 -7.469 4.214 0.163 H2 MKX 33 MKX H3 H3 H 0 1 N N N N N N 173.552 195.541 260.636 -7.465 3.463 -1.451 H3 MKX 34 MKX H4 H4 H 0 1 N N N N N N 172.979 196.292 259.109 -7.946 2.510 -0.027 H4 MKX 35 MKX H5 H5 H 0 1 N N N N N N 184.709 194.201 259.364 1.626 -1.977 1.282 H5 MKX 36 MKX H6 H6 H 0 1 N N N N N N 175.619 194.099 259.981 -5.705 1.733 -2.032 H6 MKX 37 MKX H7 H7 H 0 1 N N N N N N 181.056 195.297 255.968 -2.780 -3.792 1.892 H7 MKX 38 MKX H8 H8 H 0 1 N N N N N N 184.179 196.852 258.583 1.447 -2.174 -1.731 H8 MKX 39 MKX H9 H9 H 0 1 N N N N N N 184.852 197.784 260.649 3.700 -1.765 -2.023 H9 MKX 40 MKX H10 H10 H 0 1 N N N N N N 187.066 195.710 260.806 4.213 -1.509 0.946 H10 MKX 41 MKX H11 H11 H 0 1 N N N N N N 186.754 195.826 263.191 5.729 -0.589 -0.872 H11 MKX 42 MKX H12 H12 H 0 1 N N N N N N 187.036 197.486 262.564 4.399 0.488 -1.361 H12 MKX 43 MKX H13 H13 H 0 1 N N N N N N 182.836 195.169 262.282 0.671 0.916 -0.990 H13 MKX 44 MKX H14 H14 H 0 1 N N N N N N 176.101 195.791 261.958 -7.406 0.481 -0.482 H14 MKX 45 MKX H15 H15 H 0 1 N N N N N N 176.221 197.618 259.601 -6.144 1.955 1.595 H15 MKX 46 MKX H16 H16 H 0 1 N N N N N N 186.325 196.547 257.680 2.022 -4.413 -1.125 H16 MKX 47 MKX H17 H17 H 0 1 N N N N N N 187.031 198.519 260.412 4.060 -4.056 -1.358 H17 MKX 48 MKX H18 H18 H 0 1 N N N N N N 183.076 196.867 265.466 6.970 3.724 1.505 H18 MKX 49 MKX H19 H19 H 0 1 N N N N N N 186.682 197.457 265.765 8.076 0.891 0.657 H19 MKX 50 MKX OP1 OP1 O 0 1 N N N N N N 185.158 195.675 265.260 5.832 2.890 -0.891 OP1 MKX 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MKX C2 N1 DOUB Y N 1 MKX C2 N3 SING Y N 2 MKX N1 C6 SING Y N 3 MKX N3 C4 DOUB Y N 4 MKX O13 C13 DOUB N N 5 MKX "O2'" "C2'" SING N N 6 MKX C13 N6 SING N N 7 MKX C13 C12 SING N N 8 MKX C6 C5 DOUB Y N 9 MKX C6 N6 SING N N 10 MKX C4 C5 SING Y N 11 MKX C4 N9 SING Y N 12 MKX "C2'" "C1'" SING N N 13 MKX "C2'" "C3'" SING N N 14 MKX C14 C15 SING N N 15 MKX C14 O14 SING N N 16 MKX C14 C12 SING N N 17 MKX C5 N7 SING Y N 18 MKX N6 C10 SING N N 19 MKX "O3'" "C3'" SING N N 20 MKX C12 N11 SING N N 21 MKX "C1'" N9 SING N N 22 MKX "C1'" "O4'" SING N N 23 MKX N9 C8 SING Y N 24 MKX "C3'" "C4'" SING N N 25 MKX C10 N11 SING N N 26 MKX C10 O10 DOUB N N 27 MKX N7 C8 DOUB Y N 28 MKX "O4'" "C4'" SING N N 29 MKX "C4'" "C5'" SING N N 30 MKX "C5'" "O5'" SING N N 31 MKX "O5'" P SING N N 32 MKX P OP3 SING N N 33 MKX P OP2 SING N N 34 MKX C14 H1 SING N N 35 MKX C15 H2 SING N N 36 MKX C15 H3 SING N N 37 MKX C15 H4 SING N N 38 MKX "C1'" H5 SING N N 39 MKX C12 H6 SING N N 40 MKX C2 H7 SING N N 41 MKX "C2'" H8 SING N N 42 MKX "C3'" H9 SING N N 43 MKX "C4'" H10 SING N N 44 MKX "C5'" H11 SING N N 45 MKX "C5'" H12 SING N N 46 MKX C8 H13 SING N N 47 MKX N11 H14 SING N N 48 MKX O14 H15 SING N N 49 MKX "O2'" H16 SING N N 50 MKX "O3'" H17 SING N N 51 MKX OP3 H18 SING N N 52 MKX OP2 H19 SING N N 53 MKX P OP1 DOUB N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MKX InChI InChI 1.06 "InChI=1S/C15H19N6O10P/c1-5(22)7-13(25)21(15(26)19-7)12-8-11(16-3-17-12)20(4-18-8)14-10(24)9(23)6(31-14)2-30-32(27,28)29/h3-7,9-10,14,22-24H,2H2,1H3,(H,19,26)(H2,27,28,29)/t5-,6-,7+,9-,10-,14-/m1/s1" MKX InChIKey InChI 1.06 XJXCKRLKTAHJMN-CKTDUXNWSA-N MKX SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H]1NC(=O)N(C1=O)c2ncnc3n(cnc23)[C@@H]4O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]4O" MKX SMILES CACTVS 3.385 "C[CH](O)[CH]1NC(=O)N(C1=O)c2ncnc3n(cnc23)[CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O" MKX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@H]1C(=O)N(C(=O)N1)c2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)O" MKX SMILES "OpenEye OEToolkits" 2.0.7 "CC(C1C(=O)N(C(=O)N1)c2c3c(ncn2)n(cn3)C4C(C(C(O4)COP(=O)(O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id MKX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[6-[(4~{S})-4-[(1~{R})-1-oxidanylethyl]-2,5-bis(oxidanylidene)imidazolidin-1-yl]purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MKX _pdbx_chem_comp_synonyms.name ;cyclic N6-threonylcarbamoyladenosine 5'-monophosphate ; _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MKX "Create component" 2022-12-26 PDBJ MKX "Modify synonyms" 2023-01-30 PDBJ MKX "Initial release" 2024-04-03 RCSB #