data_MLC # _chem_comp.id MLC _chem_comp.name "MALONYL-COENZYME A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAC _chem_comp.formula "C24 H38 N7 O19 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 853.580 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MLC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CML _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MLC C8 C8 C 0 1 Y N N 2.737 52.555 48.072 3.724 0.664 -4.552 C8 MLC 1 MLC N9 N9 N 0 1 Y N N 3.718 51.624 48.220 3.378 0.819 -5.861 N9 MLC 2 MLC C4 C4 C 0 1 Y N N 4.102 51.675 49.547 4.503 1.216 -6.539 C4 MLC 3 MLC C5 C5 C 0 1 Y N N 3.164 52.486 50.161 5.526 1.298 -5.579 C5 MLC 4 MLC N7 N7 N 0 1 Y N N 2.212 52.926 49.252 4.984 0.945 -4.388 N7 MLC 5 MLC N3 N3 N 0 1 Y N N 5.034 50.947 50.190 4.778 1.522 -7.803 N3 MLC 6 MLC C2 C2 C 0 1 Y N N 4.816 50.905 51.483 5.993 1.887 -8.155 C2 MLC 7 MLC N1 N1 N 0 1 Y N N 3.831 51.526 52.208 6.987 1.973 -7.290 N1 MLC 8 MLC C6 C6 C 0 1 Y N N 3.127 52.507 51.584 6.805 1.692 -6.004 C6 MLC 9 MLC N6 N6 N 0 1 N N N 2.605 53.478 52.330 7.853 1.784 -5.104 N6 MLC 10 MLC "C1'" "C1'" C 0 1 N N R 4.349 50.936 47.080 2.051 0.598 -6.440 "C1'" MLC 11 MLC "C2'" "C2'" C 0 1 N N R 3.281 50.398 46.136 1.855 -0.894 -6.810 "C2'" MLC 12 MLC "O2'" "O2'" O 0 1 N N N 3.556 49.105 45.554 2.363 -1.165 -8.118 "O2'" MLC 13 MLC "C3'" "C3'" C 0 1 N N S 3.304 51.405 44.972 0.311 -1.038 -6.776 "C3'" MLC 14 MLC "O3'" "O3'" O 0 1 N N N 2.862 50.904 43.705 -0.229 -0.936 -8.095 "O3'" MLC 15 MLC "C4'" "C4'" C 0 1 N N R 4.755 51.781 45.092 -0.154 0.142 -5.901 "C4'" MLC 16 MLC "O4'" "O4'" O 0 1 N N N 5.220 51.814 46.468 1.021 0.838 -5.457 "O4'" MLC 17 MLC "C5'" "C5'" C 0 1 N N N 5.105 53.073 44.389 -0.936 -0.381 -4.695 "C5'" MLC 18 MLC "O5'" "O5'" O 0 1 N N N 4.141 53.242 43.326 -1.358 0.719 -3.887 "O5'" MLC 19 MLC P1 P1 P 0 1 N N S 3.506 54.697 43.070 -2.170 0.098 -2.643 P1 MLC 20 MLC O11 O11 O 0 1 N N N 2.683 55.049 44.245 -1.284 -0.806 -1.877 O11 MLC 21 MLC O12 O12 O 0 1 N N N 2.656 54.686 41.856 -3.439 -0.728 -3.189 O12 MLC 22 MLC O6 O6 O 0 1 N N N 4.837 55.517 42.914 -2.677 1.289 -1.686 O6 MLC 23 MLC P2 P2 P 0 1 N N R 5.900 56.618 43.136 -3.477 0.600 -0.470 P2 MLC 24 MLC O21 O21 O 0 1 N N N 5.329 57.864 43.701 -2.571 -0.312 0.261 O21 MLC 25 MLC O22 O22 O 0 1 N N N 6.484 57.042 41.799 -4.724 -0.234 -1.053 O22 MLC 26 MLC O7 O7 O 0 1 N N N 6.988 56.236 44.030 -4.016 1.739 0.531 O7 MLC 27 MLC CPB CPB C 0 1 N N N 7.354 54.893 44.216 -4.713 1.068 1.583 CPB MLC 28 MLC CPA CPA C 0 1 N N N 8.603 54.866 45.158 -5.253 2.100 2.576 CPA MLC 29 MLC CP7 CP7 C 0 1 N N R 8.565 56.141 46.033 -5.999 1.381 3.702 CP7 MLC 30 MLC CP9 CP9 C 0 1 N N N 9.869 54.624 44.303 -4.089 2.900 3.164 CP9 MLC 31 MLC CP8 CP8 C 0 1 N N N 8.539 53.679 46.146 -6.211 3.049 1.854 CP8 MLC 32 MLC OP3 OP3 O 0 1 N N N 7.559 55.983 47.041 -7.165 0.747 3.172 OP3 MLC 33 MLC CP6 CP6 C 0 1 N N N 9.774 56.286 46.969 -5.098 0.343 4.319 CP6 MLC 34 MLC OP2 OP2 O 0 1 N N N 10.798 56.807 46.540 -5.319 -0.835 4.137 OP2 MLC 35 MLC NP2 NP2 N 0 1 N N N 9.603 56.127 48.299 -4.048 0.724 5.073 NP2 MLC 36 MLC CP5 CP5 C 0 1 N N N 10.940 56.069 49.036 -3.220 -0.284 5.739 CP5 MLC 37 MLC CP4 CP4 C 0 1 N N N 10.860 56.800 50.392 -2.105 0.409 6.523 CP4 MLC 38 MLC CP3 CP3 C 0 1 N N N 11.773 56.098 51.374 -1.253 -0.628 7.208 CP3 MLC 39 MLC OP1 OP1 O 0 1 N N N 11.324 55.566 52.404 -1.513 -1.806 7.082 OP1 MLC 40 MLC NP1 NP1 N 0 1 N N N 12.877 55.488 50.977 -0.203 -0.247 7.962 NP1 MLC 41 MLC CP2 CP2 C 0 1 N N N 13.881 55.432 52.152 0.625 -1.255 8.628 CP2 MLC 42 MLC CP1 CP1 C 0 1 N N N 14.677 54.130 52.147 1.740 -0.562 9.413 CP1 MLC 43 MLC S S S 0 1 N N N 13.690 52.639 52.262 2.763 -1.808 10.236 S MLC 44 MLC P3 P3 P 0 1 N N N 1.324 50.513 43.550 -1.028 -2.305 -8.377 P3 MLC 45 MLC O31 O31 O 0 1 N N N 0.685 51.280 42.463 -1.668 -2.259 -9.854 O31 MLC 46 MLC O32 O32 O 0 1 N N N 0.619 50.747 44.822 -0.014 -3.550 -8.270 O32 MLC 47 MLC O33 O33 O 0 1 N N N 1.362 48.932 43.425 -2.108 -2.461 -7.376 O33 MLC 48 MLC CM1 CM1 C 0 1 N N N 13.794 51.738 53.837 3.898 -0.792 11.017 CM1 MLC 49 MLC CM2 CM2 C 0 1 N N N 15.022 51.918 54.708 4.994 -1.394 11.858 CM2 MLC 50 MLC CM3 CM3 C 0 1 N N N 15.209 50.932 55.440 5.851 -0.293 12.430 CM3 MLC 51 MLC OM2 OM2 O 0 1 N N N 13.050 50.736 53.972 3.820 0.412 10.893 OM2 MLC 52 MLC OM3 OM3 O 0 1 N N N 14.476 49.978 55.542 6.895 -0.595 13.216 OM3 MLC 53 MLC OM4 OM4 O 0 1 N N N 16.271 51.166 56.221 5.597 0.860 12.179 OM4 MLC 54 MLC H8 H8 H 0 1 N N N 2.404 52.963 47.103 3.051 0.353 -3.766 H8 MLC 55 MLC H2 H2 H 0 1 N N N 5.544 50.275 52.022 6.184 2.125 -9.191 H2 MLC 56 MLC HN61 1HN6 H 0 0 N N N 2.578 53.493 53.349 8.732 2.058 -5.410 HN61 MLC 57 MLC HN62 2HN6 H 0 0 N N N 1.643 53.603 52.012 7.708 1.576 -4.168 HN62 MLC 58 MLC "H1'" "H1'" H 0 1 N N N 4.936 50.051 47.421 1.903 1.232 -7.313 "H1'" MLC 59 MLC "H2'" "H2'" H 0 1 N N N 2.328 50.280 46.703 2.324 -1.543 -6.070 "H2'" MLC 60 MLC HO2 HO2 H 0 1 N N N 2.890 48.769 44.965 3.310 -0.969 -8.097 HO2 MLC 61 MLC "H3'" "H3'" H 0 1 N N N 2.582 52.253 45.026 0.026 -1.986 -6.320 "H3'" MLC 62 MLC "H4'" "H4'" H 0 1 N N N 5.295 50.960 44.565 -0.783 0.812 -6.488 "H4'" MLC 63 MLC "H5'1" "1H5'" H 0 0 N N N 5.158 53.948 45.077 -0.298 -1.040 -4.107 "H5'1" MLC 64 MLC "H5'2" "2H5'" H 0 0 N N N 6.161 53.108 44.034 -1.810 -0.934 -5.041 "H5'2" MLC 65 MLC H12 H12 H 0 1 N N N 2.280 55.545 41.704 -3.989 -0.103 -3.681 H12 MLC 66 MLC H22 H22 H 0 1 N N N 7.137 57.718 41.935 -5.288 0.395 -1.521 H22 MLC 67 MLC HPB1 1HPB H 0 0 N N N 6.514 54.263 44.591 -4.030 0.392 2.097 HPB1 MLC 68 MLC HPB2 2HPB H 0 0 N N N 7.524 54.353 43.255 -5.542 0.499 1.164 HPB2 MLC 69 MLC HP7 HP7 H 0 1 N N N 8.456 56.970 45.295 -6.294 2.105 4.462 HP7 MLC 70 MLC HP91 1HP9 H 0 0 N N N 10.759 54.604 44.974 -3.345 2.214 3.570 HP91 MLC 71 MLC HP92 2HP9 H 0 0 N N N 9.789 53.705 43.675 -3.634 3.508 2.383 HP92 MLC 72 MLC HP93 3HP9 H 0 0 N N N 9.974 55.367 43.478 -4.459 3.547 3.960 HP93 MLC 73 MLC HP81 1HP8 H 0 0 N N N 9.429 53.659 46.817 -7.074 2.490 1.493 HP81 MLC 74 MLC HP82 2HP8 H 0 0 N N N 7.588 53.683 46.728 -6.543 3.824 2.544 HP82 MLC 75 MLC HP83 3HP8 H 0 0 N N N 8.409 52.709 45.611 -5.698 3.510 1.010 HP83 MLC 76 MLC HP3 HP3 H 0 1 N N N 7.535 56.766 47.578 -6.861 0.116 2.505 HP3 MLC 77 MLC HP2 HP2 H 0 1 N N N 8.655 56.063 48.671 -3.840 1.666 5.174 HP2 MLC 78 MLC HP51 1HP5 H 0 0 N N N 11.297 55.019 49.156 -3.837 -0.866 6.423 HP51 MLC 79 MLC HP52 2HP5 H 0 0 N N N 11.772 56.461 48.406 -2.782 -0.945 4.991 HP52 MLC 80 MLC HP41 1HP4 H 0 0 N N N 11.083 57.888 50.304 -1.487 0.991 5.839 HP41 MLC 81 MLC HP42 2HP4 H 0 0 N N N 9.814 56.888 50.768 -2.543 1.070 7.271 HP42 MLC 82 MLC HP1 HP1 H 0 1 N N N 12.938 55.149 50.016 0.004 0.694 8.064 HP1 MLC 83 MLC HP21 1HP2 H 0 0 N N N 14.553 56.321 52.156 0.007 -1.838 9.312 HP21 MLC 84 MLC HP22 2HP2 H 0 0 N N N 13.372 55.595 53.130 1.063 -1.917 7.881 HP22 MLC 85 MLC HP11 1HP1 H 0 0 N N N 15.337 54.086 51.249 2.357 0.020 8.729 HP11 MLC 86 MLC HP12 2HP1 H 0 0 N N N 15.446 54.145 52.954 1.302 0.099 10.160 HP12 MLC 87 MLC H31 H31 H 0 1 N N N -0.231 51.047 42.370 -2.136 -3.095 -9.982 H31 MLC 88 MLC H32 H32 H 0 1 N N N -0.297 50.514 44.729 0.671 -3.410 -8.936 H32 MLC 89 MLC HM21 1HM2 H 0 0 N N N 15.925 52.149 54.096 4.553 -1.970 12.672 HM21 MLC 90 MLC HM22 2HM2 H 0 0 N N N 14.967 52.861 55.300 5.608 -2.049 11.241 HM22 MLC 91 MLC HO3 HO3 H 0 1 N N N 14.619 49.223 56.101 7.445 0.110 13.583 HO3 MLC 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MLC C8 N9 SING Y N 1 MLC C8 N7 DOUB Y N 2 MLC C8 H8 SING N N 3 MLC N9 C4 SING Y N 4 MLC N9 "C1'" SING N N 5 MLC C4 C5 SING Y N 6 MLC C4 N3 DOUB Y N 7 MLC C5 N7 SING Y N 8 MLC C5 C6 DOUB Y N 9 MLC N3 C2 SING Y N 10 MLC C2 N1 DOUB Y N 11 MLC C2 H2 SING N N 12 MLC N1 C6 SING Y N 13 MLC C6 N6 SING N N 14 MLC N6 HN61 SING N N 15 MLC N6 HN62 SING N N 16 MLC "C1'" "C2'" SING N N 17 MLC "C1'" "O4'" SING N N 18 MLC "C1'" "H1'" SING N N 19 MLC "C2'" "O2'" SING N N 20 MLC "C2'" "C3'" SING N N 21 MLC "C2'" "H2'" SING N N 22 MLC "O2'" HO2 SING N N 23 MLC "C3'" "O3'" SING N N 24 MLC "C3'" "C4'" SING N N 25 MLC "C3'" "H3'" SING N N 26 MLC "O3'" P3 SING N N 27 MLC "C4'" "O4'" SING N N 28 MLC "C4'" "C5'" SING N N 29 MLC "C4'" "H4'" SING N N 30 MLC "C5'" "O5'" SING N N 31 MLC "C5'" "H5'1" SING N N 32 MLC "C5'" "H5'2" SING N N 33 MLC "O5'" P1 SING N N 34 MLC P1 O11 DOUB N N 35 MLC P1 O12 SING N N 36 MLC P1 O6 SING N N 37 MLC O12 H12 SING N N 38 MLC O6 P2 SING N N 39 MLC P2 O21 DOUB N N 40 MLC P2 O22 SING N N 41 MLC P2 O7 SING N N 42 MLC O22 H22 SING N N 43 MLC O7 CPB SING N N 44 MLC CPB CPA SING N N 45 MLC CPB HPB1 SING N N 46 MLC CPB HPB2 SING N N 47 MLC CPA CP7 SING N N 48 MLC CPA CP9 SING N N 49 MLC CPA CP8 SING N N 50 MLC CP7 OP3 SING N N 51 MLC CP7 CP6 SING N N 52 MLC CP7 HP7 SING N N 53 MLC CP9 HP91 SING N N 54 MLC CP9 HP92 SING N N 55 MLC CP9 HP93 SING N N 56 MLC CP8 HP81 SING N N 57 MLC CP8 HP82 SING N N 58 MLC CP8 HP83 SING N N 59 MLC OP3 HP3 SING N N 60 MLC CP6 OP2 DOUB N N 61 MLC CP6 NP2 SING N N 62 MLC NP2 CP5 SING N N 63 MLC NP2 HP2 SING N N 64 MLC CP5 CP4 SING N N 65 MLC CP5 HP51 SING N N 66 MLC CP5 HP52 SING N N 67 MLC CP4 CP3 SING N N 68 MLC CP4 HP41 SING N N 69 MLC CP4 HP42 SING N N 70 MLC CP3 OP1 DOUB N N 71 MLC CP3 NP1 SING N N 72 MLC NP1 CP2 SING N N 73 MLC NP1 HP1 SING N N 74 MLC CP2 CP1 SING N N 75 MLC CP2 HP21 SING N N 76 MLC CP2 HP22 SING N N 77 MLC CP1 S SING N N 78 MLC CP1 HP11 SING N N 79 MLC CP1 HP12 SING N N 80 MLC S CM1 SING N N 81 MLC P3 O31 SING N N 82 MLC P3 O32 SING N N 83 MLC P3 O33 DOUB N N 84 MLC O31 H31 SING N N 85 MLC O32 H32 SING N N 86 MLC CM1 CM2 SING N N 87 MLC CM1 OM2 DOUB N N 88 MLC CM2 CM3 SING N N 89 MLC CM2 HM21 SING N N 90 MLC CM2 HM22 SING N N 91 MLC CM3 OM3 SING N N 92 MLC CM3 OM4 DOUB N N 93 MLC OM3 HO3 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MLC SMILES ACDLabs 10.04 "O=C(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" MLC SMILES_CANONICAL CACTVS 3.341 "CC(C)(CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC(O)=O" MLC SMILES CACTVS 3.341 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)CC(O)=O" MLC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)(CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)CC(=O)O)O" MLC SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CC(=O)O)O" MLC InChI InChI 1.03 ;InChI=1S/C24H38N7O19P3S/c1-24(2,19(37)22(38)27-4-3-13(32)26-5-6-54-15(35)7-14(33)34)9-47-53(44,45)50-52(42,43)46-8-12-18(49-51(39,40)41)17(36)23(48-12)31-11-30-16-20(25)28-10-29-21(16)31/h10-12,17-19,23,36-37H,3-9H2,1-2H3,(H,26,32)(H,27,38)(H,33,34)(H,42,43)(H,44,45)(H2,25,28,29)(H2,39,40,41)/t12-,17-,18-,19+,23-/m1/s1 ; MLC InChIKey InChI 1.03 LTYOQGRJFJAKNA-DVVLENMVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MLC "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphahenicosan-21-oic acid 3,5-dioxide (non-preferred name)" MLC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-oxo-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MLC "Create component" 1999-07-08 EBI MLC "Modify descriptor" 2011-06-04 RCSB #