data_MLY # _chem_comp.id MLY _chem_comp.name N-DIMETHYL-LYSINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H18 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces TRG _chem_comp.formula_weight 174.241 _chem_comp.one_letter_code K _chem_comp.three_letter_code MLY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2MYS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MLY N N N 0 1 N N N Y Y N 30.897 32.013 86.595 -1.796 -0.012 -2.201 N MLY 1 MLY CA CA C 0 1 N N S Y N N 30.008 31.772 85.465 -0.408 0.467 -2.256 CA MLY 2 MLY CB CB C 0 1 N N N N N N 28.866 32.726 85.430 0.352 -0.033 -1.026 CB MLY 3 MLY CG CG C 0 1 N N N N N N 27.670 32.308 86.280 -0.321 0.496 0.240 CG MLY 4 MLY CD CD C 0 1 N N N N N N 27.216 30.876 86.047 0.439 -0.003 1.470 CD MLY 5 MLY CE CE C 0 1 N N N N N N 25.708 30.712 86.248 -0.233 0.526 2.737 CE MLY 6 MLY NZ NZ N 0 1 N N N N N N 25.277 29.321 86.461 0.496 0.045 3.917 NZ MLY 7 MLY CH1 CH1 C 0 1 N N N N N N 23.809 29.228 86.351 -0.197 0.587 5.093 CH1 MLY 8 MLY CH2 CH2 C 0 1 N N N N N N 25.992 28.420 85.520 0.321 -1.412 3.958 CH2 MLY 9 MLY C C C 0 1 N N N Y N Y 30.734 31.700 84.129 0.254 -0.054 -3.504 C MLY 10 MLY O O O 0 1 N N N Y N Y 31.846 32.183 83.971 -0.089 -1.113 -3.973 O MLY 11 MLY OXT OXT O 0 1 N Y N Y N Y 30.115 31.026 83.149 1.227 0.656 -4.095 OXT MLY 12 MLY H 1HN H 0 1 N N N Y Y N 31.679 31.359 86.619 -2.166 0.271 -1.307 H MLY 13 MLY H2 2HN H 0 1 N Y N Y Y N 30.383 32.004 87.476 -1.754 -1.020 -2.191 H2 MLY 14 MLY HA HA H 0 1 N N N Y N N 29.580 30.756 85.633 -0.401 1.557 -2.269 HA MLY 15 MLY HB2 1HB H 0 1 N N N N N N 29.205 33.749 85.713 1.381 0.322 -1.067 HB2 MLY 16 MLY HB3 2HB H 0 1 N N N N N N 28.548 32.914 84.377 0.344 -1.123 -1.013 HB3 MLY 17 MLY HG2 1HG H 0 1 N N N N N N 27.878 32.481 87.361 -1.350 0.141 0.281 HG2 MLY 18 MLY HG3 2HG H 0 1 N N N N N N 26.820 33.016 86.136 -0.313 1.586 0.227 HG3 MLY 19 MLY HD2 1HD H 0 1 N N N N N N 27.532 30.509 85.042 1.469 0.352 1.429 HD2 MLY 20 MLY HD3 2HD H 0 1 N N N N N N 27.788 30.161 86.683 0.432 -1.093 1.483 HD3 MLY 21 MLY HE2 1HE H 0 1 N N N N N N 25.351 31.363 87.080 -1.263 0.170 2.777 HE2 MLY 22 MLY HE3 2HE H 0 1 N N N N N N 25.148 31.168 85.398 -0.226 1.616 2.724 HE3 MLY 23 MLY HH11 1HC1 H 0 0 N N N N N N 23.482 28.174 86.512 0.310 0.256 5.999 HH11 MLY 24 MLY HH12 2HC1 H 0 0 N N N N N N 23.291 29.936 87.039 -0.190 1.676 5.050 HH12 MLY 25 MLY HH13 3HC1 H 0 0 N N N N N N 23.434 29.638 85.384 -1.227 0.230 5.103 HH13 MLY 26 MLY HH21 1HC2 H 0 0 N N N N N N 25.665 27.366 85.681 0.822 -1.862 3.101 HH21 MLY 27 MLY HH22 2HC2 H 0 0 N N N N N N 25.867 28.739 84.458 0.753 -1.804 4.878 HH22 MLY 28 MLY HH23 3HC2 H 0 0 N N N N N N 27.099 28.531 85.593 -0.741 -1.651 3.925 HH23 MLY 29 MLY HXT HXT H 0 1 N Y N Y N Y 30.568 30.981 82.315 1.653 0.321 -4.896 HXT MLY 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MLY N CA SING N N 1 MLY N H SING N N 2 MLY N H2 SING N N 3 MLY CA CB SING N N 4 MLY CA C SING N N 5 MLY CA HA SING N N 6 MLY CB CG SING N N 7 MLY CB HB2 SING N N 8 MLY CB HB3 SING N N 9 MLY CG CD SING N N 10 MLY CG HG2 SING N N 11 MLY CG HG3 SING N N 12 MLY CD CE SING N N 13 MLY CD HD2 SING N N 14 MLY CD HD3 SING N N 15 MLY CE NZ SING N N 16 MLY CE HE2 SING N N 17 MLY CE HE3 SING N N 18 MLY NZ CH1 SING N N 19 MLY NZ CH2 SING N N 20 MLY CH1 HH11 SING N N 21 MLY CH1 HH12 SING N N 22 MLY CH1 HH13 SING N N 23 MLY CH2 HH21 SING N N 24 MLY CH2 HH22 SING N N 25 MLY CH2 HH23 SING N N 26 MLY C O DOUB N N 27 MLY C OXT SING N N 28 MLY OXT HXT SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MLY SMILES ACDLabs 10.04 "O=C(O)C(N)CCCCN(C)C" MLY SMILES_CANONICAL CACTVS 3.341 "CN(C)CCCC[C@H](N)C(O)=O" MLY SMILES CACTVS 3.341 "CN(C)CCCC[CH](N)C(O)=O" MLY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)CCCC[C@@H](C(=O)O)N" MLY SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)CCCCC(C(=O)O)N" MLY InChI InChI 1.03 "InChI=1S/C8H18N2O2/c1-10(2)6-4-3-5-7(9)8(11)12/h7H,3-6,9H2,1-2H3,(H,11,12)/t7-/m0/s1" MLY InChIKey InChI 1.03 XXEWFEBMSGLYBY-ZETCQYMHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MLY "SYSTEMATIC NAME" ACDLabs 10.04 N~6~,N~6~-dimethyl-L-lysine MLY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-6-dimethylamino-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MLY "Create component" 1999-07-08 RCSB MLY "Modify descriptor" 2011-06-04 RCSB MLY "Modify backbone" 2023-11-03 PDBE MLY "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id MLY _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0188 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0193 #