data_MLZ # _chem_comp.id MLZ _chem_comp.name N-METHYL-LYSINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H16 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 160.214 _chem_comp.one_letter_code K _chem_comp.three_letter_code MLZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XER _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MLZ N N N 0 1 N N N Y Y N 21.135 7.501 5.557 0.306 -2.126 -2.601 N MLZ 1 MLZ CA CA C 0 1 N N S Y N N 20.063 8.383 5.107 0.164 -0.696 -2.695 CA MLZ 2 MLZ CB CB C 0 1 N N N N N N 19.940 8.313 3.578 1.172 0.050 -1.819 CB MLZ 3 MLZ CG CG C 0 1 N N N N N N 20.779 9.328 2.812 1.029 -0.210 -0.314 CG MLZ 4 MLZ CD CD C 0 1 N N N N N N 22.231 9.360 3.277 2.018 0.595 0.536 CD MLZ 5 MLZ CE CE C 0 1 N N N N N N 23.069 10.325 2.425 1.909 0.286 2.031 CE MLZ 6 MLZ NZ NZ N 0 1 N N N N N N 24.346 10.709 3.091 2.885 1.034 2.814 NZ MLZ 7 MLZ CM CM C 0 1 N N N N N N ? ? ? 2.795 0.688 4.225 CM MLZ 8 MLZ C C C 0 1 N N N Y N Y 18.696 8.162 5.743 0.373 -0.338 -4.153 C MLZ 9 MLZ O O O 0 1 N N N Y N Y 17.917 9.106 5.896 1.159 -0.891 -4.911 O MLZ 10 MLZ OXT OXT O 0 1 N Y N Y N Y 18.410 6.921 6.117 -0.389 0.723 -4.529 OXT MLZ 11 MLZ H 1HN H 0 1 N N N Y Y N 21.216 7.547 6.572 -0.419 -2.715 -2.974 H MLZ 12 MLZ H2 2HN H 0 1 N Y N Y Y N 22.019 7.703 5.091 1.013 -2.509 -1.994 H2 MLZ 13 MLZ HA HA H 0 1 N N N Y N N 20.372 9.397 5.451 -0.871 -0.473 -2.418 HA MLZ 14 MLZ HB2 1HB H 0 1 N N N N N N 20.167 7.281 3.221 2.192 -0.230 -2.117 HB2 MLZ 15 MLZ HB3 2HB H 0 1 N N N N N N 18.869 8.393 3.275 1.090 1.129 -2.004 HB3 MLZ 16 MLZ HG2 1HG H 0 1 N N N N N N 20.714 9.152 1.712 1.197 -1.280 -0.139 HG2 MLZ 17 MLZ HG3 2HG H 0 1 N N N N N N 20.320 10.343 2.859 0.000 0.000 0.000 HG3 MLZ 18 MLZ HD2 1HD H 0 1 N N N N N N 22.307 9.601 4.362 1.866 1.669 0.377 HD2 MLZ 19 MLZ HD3 2HD H 0 1 N N N N N N 22.677 8.338 3.296 3.041 0.368 0.210 HD3 MLZ 20 MLZ HE2 1HE H 0 1 N N N N N N 23.256 9.905 1.409 0.902 0.522 2.390 HE2 MLZ 21 MLZ HE3 2HE H 0 1 N N N N N N 22.477 11.226 2.139 2.071 -0.786 2.190 HE3 MLZ 22 MLZ HZ HZ H 0 1 N N N N N N 25.127 11.257 3.450 2.710 2.032 2.701 HZ MLZ 23 MLZ HCM1 1HCM H 0 0 N N N N N N 0.955 0.287 0.498 2.237 1.456 4.766 HCM1 MLZ 24 MLZ HCM2 2HCM H 0 0 N N N N N N -1.085 -0.122 -0.224 3.796 0.608 4.659 HCM2 MLZ 25 MLZ HCM3 3HCM H 0 0 N N N N N N -0.853 -0.599 -0.392 2.283 -0.271 4.347 HCM3 MLZ 26 MLZ HXT HXT H 0 1 N Y N Y N Y 17.557 6.783 6.513 -0.266 1.020 -5.456 HXT MLZ 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MLZ N CA SING N N 1 MLZ N H SING N N 2 MLZ N H2 SING N N 3 MLZ CA CB SING N N 4 MLZ CA C SING N N 5 MLZ CA HA SING N N 6 MLZ CB CG SING N N 7 MLZ CB HB2 SING N N 8 MLZ CB HB3 SING N N 9 MLZ CG CD SING N N 10 MLZ CG HG2 SING N N 11 MLZ CG HG3 SING N N 12 MLZ CD CE SING N N 13 MLZ CD HD2 SING N N 14 MLZ CD HD3 SING N N 15 MLZ CE NZ SING N N 16 MLZ CE HE2 SING N N 17 MLZ CE HE3 SING N N 18 MLZ NZ CM SING N N 19 MLZ NZ HZ SING N N 20 MLZ CM HCM1 SING N N 21 MLZ CM HCM2 SING N N 22 MLZ CM HCM3 SING N N 23 MLZ C O DOUB N N 24 MLZ C OXT SING N N 25 MLZ OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MLZ SMILES ACDLabs 10.04 "O=C(O)C(N)CCCCNC" MLZ SMILES_CANONICAL CACTVS 3.341 "CNCCCC[C@H](N)C(O)=O" MLZ SMILES CACTVS 3.341 "CNCCCC[CH](N)C(O)=O" MLZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CNCCCC[C@@H](C(=O)O)N" MLZ SMILES "OpenEye OEToolkits" 1.5.0 "CNCCCCC(C(=O)O)N" MLZ InChI InChI 1.03 "InChI=1S/C7H16N2O2/c1-9-5-3-2-4-6(8)7(10)11/h6,9H,2-5,8H2,1H3,(H,10,11)/t6-/m0/s1" MLZ InChIKey InChI 1.03 PQNASZJZHFPQLE-LURJTMIESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MLZ "SYSTEMATIC NAME" ACDLabs 10.04 N~6~-methyl-L-lysine MLZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-6-methylamino-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MLZ "Create component" 1999-07-08 RCSB MLZ "Modify descriptor" 2011-06-04 RCSB MLZ "Modify backbone" 2023-11-03 PDBE MLZ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id MLZ _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0194 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0193 #