data_MMX # _chem_comp.id MMX _chem_comp.name "3-ethyl-3,4,5,6-tetrahydrocytidine 5'-(dihydrogen phosphate)" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H22 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-17 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 355.281 _chem_comp.one_letter_code C _chem_comp.three_letter_code MMX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UCJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MMX "C1'" C1 C 0 1 N N R 364.559 225.930 386.296 0.956 -1.416 -0.673 "C1'" MMX 1 MMX C2 C2 C 0 1 N N N 365.134 228.478 386.637 2.063 0.557 0.195 C2 MMX 2 MMX "C2'" C3 C 0 1 N N R 363.084 225.681 386.612 0.828 -2.163 0.679 "C2'" MMX 3 MMX "C3'" C4 C 0 1 N N S 362.413 226.430 385.471 -0.672 -2.547 0.696 "C3'" MMX 4 MMX C4 C5 C 0 1 N N S 366.107 229.116 388.883 4.264 1.317 -0.553 C4 MMX 5 MMX "C4'" C6 C 0 1 N N R 363.336 226.097 384.313 -1.324 -1.568 -0.298 "C4'" MMX 6 MMX C5 C7 C 0 1 N N N 366.524 227.699 388.994 4.498 -0.161 -0.883 C5 MMX 7 MMX "C5'" C8 C 0 1 N N N 363.251 226.946 383.066 -2.409 -0.753 0.410 "C5'" MMX 8 MMX C6 C9 C 0 1 N N N 365.548 226.742 388.427 3.229 -0.722 -1.534 C6 MMX 9 MMX N1 N1 N 0 1 N N N 365.084 227.063 387.095 2.089 -0.488 -0.645 N1 MMX 10 MMX N3 N2 N 0 1 N N N 365.668 229.567 387.481 3.069 1.440 0.283 N3 MMX 11 MMX N4 N3 N 0 1 N N N 367.128 229.980 389.459 4.073 2.074 -1.798 N4 MMX 12 MMX O2 O1 O 0 1 N N N 364.754 228.762 385.554 1.085 0.714 0.901 O2 MMX 13 MMX "O2'" O2 O 0 1 N N N 362.834 224.287 386.511 1.654 -3.328 0.697 "O2'" MMX 14 MMX "O3'" O3 O 0 1 N N N 361.059 226.061 385.271 -0.847 -3.897 0.261 "O3'" MMX 15 MMX "O4'" O4 O 0 1 N N N 364.653 226.211 384.911 -0.290 -0.693 -0.778 "O4'" MMX 16 MMX "O5'" O5 O 0 1 N N N 362.540 228.156 383.266 -3.075 0.080 -0.541 "O5'" MMX 17 MMX OP1 O6 O 0 1 N N N 360.921 228.094 381.351 -5.344 0.313 0.542 OP1 MMX 18 MMX OP2 O7 O 0 1 N N N 361.593 230.353 382.467 -3.720 2.223 0.840 OP2 MMX 19 MMX P P1 P 0 1 N N N 361.963 228.962 382.016 -4.277 1.076 -0.144 P MMX 20 MMX C31 C10 C 0 1 N N N 365.688 230.949 387.019 2.969 2.549 1.235 C31 MMX 21 MMX C32 C11 C 0 1 N N N 367.082 231.537 386.815 3.560 2.121 2.580 C32 MMX 22 MMX OP3 O8 O 0 1 N Y N 363.211 229.069 381.008 -4.873 1.755 -1.476 OP3 MMX 23 MMX H1 H1 H 0 1 N N N 365.129 225.021 386.538 1.061 -2.124 -1.495 H1 MMX 24 MMX H2 H2 H 0 1 N N N 362.806 226.101 387.590 1.070 -1.503 1.512 H2 MMX 25 MMX H3 H3 H 0 1 N N N 362.481 227.509 385.674 -1.089 -2.412 1.694 H3 MMX 26 MMX H4 H4 H 0 1 N N N 365.216 229.222 389.519 5.127 1.711 -0.016 H4 MMX 27 MMX H5 H5 H 0 1 N N N 363.162 225.049 384.028 -1.758 -2.120 -1.132 H5 MMX 28 MMX H6 H6 H 0 1 N N N 366.664 227.461 390.059 5.335 -0.254 -1.574 H6 MMX 29 MMX H7 H7 H 0 1 N N N 367.479 227.576 388.462 4.716 -0.710 0.033 H7 MMX 30 MMX H8 H8 H 0 1 N N N 362.742 226.366 382.282 -3.130 -1.429 0.869 H8 MMX 31 MMX H9 H9 H 0 1 N N N 364.272 227.190 382.738 -1.951 -0.132 1.180 H9 MMX 32 MMX H10 H10 H 0 1 N N N 364.674 226.709 389.095 3.056 -0.221 -2.487 H10 MMX 33 MMX H11 H11 H 0 1 N N N 366.022 225.750 388.394 3.348 -1.792 -1.702 H11 MMX 34 MMX H12 H12 H 0 1 N N N 367.377 229.643 390.367 3.917 3.052 -1.606 H12 MMX 35 MMX H13 H13 H 0 1 N N N 367.936 229.979 388.870 4.856 1.948 -2.421 H13 MMX 36 MMX H15 H15 H 0 1 N N N 363.260 223.836 387.230 1.609 -3.830 1.523 H15 MMX 37 MMX H16 H16 H 0 1 N N N 360.549 226.301 386.035 -0.406 -4.551 0.821 H16 MMX 38 MMX H17 H17 H 0 1 N N N 360.681 230.521 382.260 -3.016 2.763 0.456 H17 MMX 39 MMX H18 H18 H 0 1 N N N 365.162 231.566 387.763 3.522 3.407 0.852 H18 MMX 40 MMX H19 H19 H 0 1 N N N 365.153 230.996 386.059 1.922 2.821 1.367 H19 MMX 41 MMX H20 H20 H 0 1 N N N 366.995 232.577 386.468 3.007 1.263 2.963 H20 MMX 42 MMX H21 H21 H 0 1 N N N 367.633 231.513 387.767 4.607 1.849 2.447 H21 MMX 43 MMX H22 H22 H 0 1 N N N 367.624 230.944 386.063 3.486 2.947 3.288 H22 MMX 44 MMX H23 H23 H 0 1 N N N 363.027 228.570 380.221 -5.602 2.369 -1.311 H23 MMX 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MMX OP1 P DOUB N N 1 MMX P OP2 SING N N 2 MMX P "O5'" SING N N 3 MMX "C5'" "O5'" SING N N 4 MMX "C5'" "C4'" SING N N 5 MMX "C4'" "O4'" SING N N 6 MMX "C4'" "C3'" SING N N 7 MMX "O4'" "C1'" SING N N 8 MMX "O3'" "C3'" SING N N 9 MMX "C3'" "C2'" SING N N 10 MMX O2 C2 DOUB N N 11 MMX "C1'" "C2'" SING N N 12 MMX "C1'" N1 SING N N 13 MMX "O2'" "C2'" SING N N 14 MMX C2 N1 SING N N 15 MMX C2 N3 SING N N 16 MMX C32 C31 SING N N 17 MMX C31 N3 SING N N 18 MMX N1 C6 SING N N 19 MMX N3 C4 SING N N 20 MMX C6 C5 SING N N 21 MMX C4 C5 SING N N 22 MMX C4 N4 SING N N 23 MMX P OP3 SING N N 24 MMX "C1'" H1 SING N N 25 MMX "C2'" H2 SING N N 26 MMX "C3'" H3 SING N N 27 MMX C4 H4 SING N N 28 MMX "C4'" H5 SING N N 29 MMX C5 H6 SING N N 30 MMX C5 H7 SING N N 31 MMX "C5'" H8 SING N N 32 MMX "C5'" H9 SING N N 33 MMX C6 H10 SING N N 34 MMX C6 H11 SING N N 35 MMX N4 H12 SING N N 36 MMX N4 H13 SING N N 37 MMX "O2'" H15 SING N N 38 MMX "O3'" H16 SING N N 39 MMX OP2 H17 SING N N 40 MMX C31 H18 SING N N 41 MMX C31 H19 SING N N 42 MMX C32 H20 SING N N 43 MMX C32 H21 SING N N 44 MMX C32 H22 SING N N 45 MMX OP3 H23 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MMX SMILES ACDLabs 12.01 "O=P(O)(O)OCC1OC(N2CCC(N)N(CC)C2=O)C(O)C1O" MMX InChI InChI 1.03 "InChI=1S/C11H22N3O8P/c1-2-13-7(12)3-4-14(11(13)17)10-9(16)8(15)6(22-10)5-21-23(18,19)20/h6-10,15-16H,2-5,12H2,1H3,(H2,18,19,20)/t6-,7+,8-,9-,10-/m1/s1" MMX InChIKey InChI 1.03 YFXIRUNUMADJET-JDDHQFAOSA-N MMX SMILES_CANONICAL CACTVS 3.385 "CCN1[C@H](N)CCN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O" MMX SMILES CACTVS 3.385 "CCN1[CH](N)CCN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C1=O" MMX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1[C@@H](CCN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N" MMX SMILES "OpenEye OEToolkits" 2.0.7 "CCN1C(CCN(C1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MMX "SYSTEMATIC NAME" ACDLabs 12.01 "3-ethyl-3,4,5,6-tetrahydrocytidine 5'-(dihydrogen phosphate)" MMX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-[(4~{S})-4-azanyl-3-ethyl-2-oxidanylidene-1,3-diazinan-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MMX "Create component" 2022-03-17 RCSB MMX "Initial release" 2022-06-01 RCSB ##