data_MN0 # _chem_comp.id MN0 _chem_comp.name "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H21 N O10" _chem_comp.mon_nstd_parent_comp_id SIA _chem_comp.pdbx_synonyms ;methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid; methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-21 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 339.296 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MN0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SIS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 MN0 "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid" PDB ? 2 MN0 "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid" PDB ? 3 MN0 "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MN0 C1 C1 C 0 1 N N N 3.373 47.239 6.250 -1.658 -2.033 -1.257 C1 MN0 1 MN0 C2 C2 C 0 1 N N R 1.877 46.933 6.538 -1.444 -1.838 0.222 C2 MN0 2 MN0 O2 O2 O 0 1 N N N 1.565 47.359 7.896 -2.518 -2.446 0.943 O2 MN0 3 MN0 C3 C3 C 0 1 N N N 0.992 47.747 5.567 -0.120 -2.486 0.636 C3 MN0 4 MN0 C4 C4 C 0 1 N N S 1.026 47.186 4.132 1.031 -1.788 -0.096 C4 MN0 5 MN0 O4 O4 O 0 1 N N N 0.076 47.867 3.306 2.276 -2.339 0.338 O4 MN0 6 MN0 C5 C5 C 0 1 N N R 0.730 45.691 4.099 0.991 -0.291 0.223 C5 MN0 7 MN0 N5 N5 N 0 1 N N N 0.802 45.247 2.692 2.042 0.398 -0.531 N5 MN0 8 MN0 C6 C6 C 0 1 N N R 1.694 44.949 5.037 -0.376 0.272 -0.175 C6 MN0 9 MN0 O6 O6 O 0 1 N N N 1.564 45.518 6.389 -1.403 -0.441 0.518 O6 MN0 10 MN0 C7 C7 C 0 1 N N R 1.524 43.448 5.269 -0.445 1.755 0.195 C7 MN0 11 MN0 O7 O7 O 0 1 N N N 0.171 43.152 5.626 -0.146 1.914 1.583 O7 MN0 12 MN0 C8 C8 C 0 1 N N R 2.467 42.961 6.384 -1.851 2.286 -0.088 C8 MN0 13 MN0 O8 O8 O 0 1 N N N 3.748 43.582 6.229 -2.151 2.127 -1.476 O8 MN0 14 MN0 C9 C9 C 0 1 N N N 2.639 41.450 6.343 -1.920 3.769 0.282 C9 MN0 15 MN0 O9 O9 O 0 1 N N N 3.340 41.035 7.515 -3.262 4.236 0.129 O9 MN0 16 MN0 C10 C10 C 0 1 N N N 0.013 44.293 2.192 3.295 0.458 -0.038 C10 MN0 17 MN0 O10 O10 O 0 1 N N N -0.797 43.657 2.864 3.553 -0.057 1.029 O10 MN0 18 MN0 C11 C11 C 0 1 N N N 0.147 43.945 0.712 4.376 1.167 -0.813 C11 MN0 19 MN0 O11 O11 O 0 1 N N N 1.023 44.667 -0.040 5.606 1.095 -0.089 O11 MN0 20 MN0 C12 C12 C 0 1 N N N 1.439 46.316 8.923 -2.470 -2.223 2.354 C12 MN0 21 MN0 O1B O1B O 0 1 N N N 3.701 48.435 6.121 -0.727 -1.618 -2.130 O1B MN0 22 MN0 O1A O1A O 0 1 N N N 4.166 46.272 6.176 -2.666 -2.568 -1.656 O1A MN0 23 MN0 H32 H3 H 0 1 N N N -0.046 47.715 5.930 0.016 -2.380 1.713 H32 MN0 24 MN0 H31 H3A H 0 1 N N N 1.359 48.784 5.546 -0.133 -3.543 0.373 H31 MN0 25 MN0 H4 H4 H 0 1 N N N 2.044 47.349 3.748 0.922 -1.936 -1.170 H4 MN0 26 MN0 HO4 HO4 H 0 1 N Y N 0.108 47.511 2.426 2.366 -3.287 0.173 HO4 MN0 27 MN0 H5 H5 H 0 1 N N N -0.280 45.462 4.470 1.150 -0.141 1.291 H5 MN0 28 MN0 HN5 HN5 H 0 1 N N N 1.471 45.680 2.088 1.836 0.810 -1.384 HN5 MN0 29 MN0 H6 H6 H 0 1 N N N 2.649 45.079 4.507 -0.516 0.159 -1.250 H6 MN0 30 MN0 H7 H7 H 0 1 N N N 1.777 42.926 4.334 0.280 2.312 -0.399 H7 MN0 31 MN0 HO7 HO7 H 0 1 N Y N -0.386 43.246 4.862 -0.752 1.444 2.172 HO7 MN0 32 MN0 H8 H8 H 0 1 N N N 2.022 43.235 7.352 -2.576 1.729 0.506 H8 MN0 33 MN0 HO8 HO8 H 0 1 N Y N 3.646 44.526 6.240 -1.544 2.597 -2.066 HO8 MN0 34 MN0 H92 H9 H 0 1 N N N 1.652 40.965 6.310 -1.606 3.900 1.318 H92 MN0 35 MN0 H91 H9A H 0 1 N N N 3.212 41.166 5.448 -1.260 4.338 -0.373 H91 MN0 36 MN0 HO9 HO9 H 0 1 N Y N 3.453 40.092 7.500 -3.380 5.171 0.347 HO9 MN0 37 MN0 H111 H11 H 0 0 N N N 0.477 42.897 0.663 4.498 0.689 -1.785 H111 MN0 38 MN0 H12 H12 H 0 1 N N N 1.203 46.781 9.892 -3.370 -2.629 2.817 H12 MN0 39 MN0 H12A H12A H 0 0 N N N 0.632 45.622 8.644 -1.593 -2.717 2.771 H12A MN0 40 MN0 H12B H12B H 0 0 N N N 2.387 45.764 9.003 -2.413 -1.152 2.551 H12B MN0 41 MN0 H113 H19 H 0 0 N N N -0.847 44.087 0.263 4.098 2.211 -0.953 H113 MN0 42 MN0 H20 H20 H 0 1 N N N 1.008 44.350 -0.935 6.348 1.531 -0.530 H20 MN0 43 MN0 HO1B HO1B H 0 0 N N N 4.636 48.492 5.960 -0.909 -1.765 -3.068 HO1B MN0 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MN0 C1 C2 SING N N 1 MN0 C2 O2 SING N N 2 MN0 O2 C12 SING N N 3 MN0 C3 C2 SING N N 4 MN0 C3 H32 SING N N 5 MN0 C3 H31 SING N N 6 MN0 C4 C3 SING N N 7 MN0 C4 H4 SING N N 8 MN0 O4 C4 SING N N 9 MN0 O4 HO4 SING N N 10 MN0 C5 C4 SING N N 11 MN0 C5 C6 SING N N 12 MN0 C5 H5 SING N N 13 MN0 N5 C5 SING N N 14 MN0 N5 HN5 SING N N 15 MN0 C6 C7 SING N N 16 MN0 C6 O6 SING N N 17 MN0 C6 H6 SING N N 18 MN0 O6 C2 SING N N 19 MN0 C7 O7 SING N N 20 MN0 C7 C8 SING N N 21 MN0 C7 H7 SING N N 22 MN0 O7 HO7 SING N N 23 MN0 C8 H8 SING N N 24 MN0 O8 C8 SING N N 25 MN0 O8 HO8 SING N N 26 MN0 C9 C8 SING N N 27 MN0 C9 O9 SING N N 28 MN0 C9 H92 SING N N 29 MN0 C9 H91 SING N N 30 MN0 O9 HO9 SING N N 31 MN0 C10 N5 SING N N 32 MN0 C10 O10 DOUB N N 33 MN0 C11 C10 SING N N 34 MN0 C11 H111 SING N N 35 MN0 O11 C11 SING N N 36 MN0 C12 H12 SING N N 37 MN0 C12 H12A SING N N 38 MN0 C12 H12B SING N N 39 MN0 O1B C1 SING N N 40 MN0 O1A C1 DOUB N N 41 MN0 C11 H113 SING N N 42 MN0 O11 H20 SING N N 43 MN0 O1B HO1B SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MN0 SMILES ACDLabs 12.01 "O=C(O)C1(OC)OC(C(NC(=O)CO)C(O)C1)C(O)C(O)CO" MN0 InChI InChI 1.03 "InChI=1S/C12H21NO10/c1-22-12(11(20)21)2-5(16)8(13-7(18)4-15)10(23-12)9(19)6(17)3-14/h5-6,8-10,14-17,19H,2-4H2,1H3,(H,13,18)(H,20,21)/t5-,6+,8+,9+,10+,12+/m0/s1" MN0 InChIKey InChI 1.03 NFUCYHODBBSMAK-BLMTXZDNSA-N MN0 SMILES_CANONICAL CACTVS 3.370 "CO[C@@]1(C[C@H](O)[C@@H](NC(=O)CO)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O" MN0 SMILES CACTVS 3.370 "CO[C]1(C[CH](O)[CH](NC(=O)CO)[CH](O1)[CH](O)[CH](O)CO)C(O)=O" MN0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)CO)O)C(=O)O" MN0 SMILES "OpenEye OEToolkits" 1.7.2 "COC1(CC(C(C(O1)C(C(CO)O)O)NC(=O)CO)O)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MN0 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid" MN0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 ;(2R,4S,5R,6R)-2-methoxy-4-oxidanyl-5-(2-oxidanylethanoylamino)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid ; MN0 "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 "2-O-methyl-5-N-glycolyl-a-D-neuraminic acid" # _pdbx_chem_comp_related.comp_id MN0 _pdbx_chem_comp_related.related_comp_id SIA _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 MN0 C1 SIA C1 "Carbohydrate core" 2 MN0 C10 SIA C10 "Carbohydrate core" 3 MN0 C11 SIA C11 "Carbohydrate core" 4 MN0 C2 SIA C2 "Carbohydrate core" 5 MN0 C3 SIA C3 "Carbohydrate core" 6 MN0 C4 SIA C4 "Carbohydrate core" 7 MN0 C5 SIA C5 "Carbohydrate core" 8 MN0 C6 SIA C6 "Carbohydrate core" 9 MN0 C7 SIA C7 "Carbohydrate core" 10 MN0 C8 SIA C8 "Carbohydrate core" 11 MN0 C9 SIA C9 "Carbohydrate core" 12 MN0 N5 SIA N5 "Carbohydrate core" 13 MN0 O10 SIA O10 "Carbohydrate core" 14 MN0 O1A SIA O1A "Carbohydrate core" 15 MN0 O1B SIA O1B "Carbohydrate core" 16 MN0 O2 SIA O2 "Carbohydrate core" 17 MN0 O4 SIA O4 "Carbohydrate core" 18 MN0 O6 SIA O6 "Carbohydrate core" 19 MN0 O7 SIA O7 "Carbohydrate core" 20 MN0 O8 SIA O8 "Carbohydrate core" 21 MN0 O9 SIA O9 "Carbohydrate core" 22 MN0 H111 SIA H111 "Carbohydrate core" 23 MN0 H113 SIA H113 "Carbohydrate core" 24 MN0 H32 SIA H32 "Carbohydrate core" 25 MN0 H31 SIA H31 "Carbohydrate core" 26 MN0 H4 SIA H4 "Carbohydrate core" 27 MN0 H5 SIA H5 "Carbohydrate core" 28 MN0 H6 SIA H6 "Carbohydrate core" 29 MN0 H7 SIA H7 "Carbohydrate core" 30 MN0 H8 SIA H8 "Carbohydrate core" 31 MN0 H92 SIA H92 "Carbohydrate core" 32 MN0 H91 SIA H91 "Carbohydrate core" 33 MN0 HN5 SIA HN5 "Carbohydrate core" 34 MN0 HO1B SIA HO1B "Carbohydrate core" 35 MN0 HO4 SIA HO4 "Carbohydrate core" 36 MN0 HO7 SIA HO7 "Carbohydrate core" 37 MN0 HO8 SIA HO8 "Carbohydrate core" 38 MN0 HO9 SIA HO9 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support MN0 "CARBOHYDRATE ISOMER" D PDB ? MN0 "CARBOHYDRATE RING" pyranose PDB ? MN0 "CARBOHYDRATE ANOMER" alpha PDB ? MN0 "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MN0 "Create component" 2011-07-21 RCSB MN0 "Modify atom id" 2011-09-21 RCSB MN0 "Other modification" 2020-07-03 RCSB MN0 "Modify parent residue" 2020-07-17 RCSB MN0 "Modify synonyms" 2020-07-17 RCSB MN0 "Modify atom id" 2020-07-17 RCSB MN0 "Modify component atom id" 2020-07-17 RCSB MN0 "Modify leaving atom flag" 2020-07-17 RCSB ##