data_MNI # _chem_comp.id MNI _chem_comp.name "N-{[(2R,3R,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PYRROLIDIN-2-YL]METHYL}-4-(DIMETHYLAMINO)BENZAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-(4-DIMETHYLAMINO)BENZOYLAMINO-1,2,5-TRIDEOXY-2,5-IMINO-D-MANNITOL" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-02-26 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MNI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MNI O1B O1B O 0 1 N N N 4.416 50.727 40.101 -0.277 0.275 3.459 O1B MNI 1 MNI C1B C1B C 0 1 N N N 5.613 50.921 39.895 -0.574 1.446 3.679 C1B MNI 2 MNI C2B C2B C 0 1 Y N N 6.605 50.484 40.944 -0.749 1.899 5.084 C2B MNI 3 MNI C3B C3B C 0 1 Y N N 7.989 50.666 40.813 -1.112 0.974 6.040 C3B MNI 4 MNI C4B C4B C 0 1 Y N N 8.856 50.244 41.827 -1.278 1.398 7.359 C4B MNI 5 MNI C5B C5B C 0 1 Y N N 8.355 49.632 42.991 -1.077 2.738 7.691 C5B MNI 6 MNI N5B N5B N 0 1 N N N 9.186 49.208 43.996 -1.244 3.167 9.024 N5B MNI 7 MNI C8B C8B C 0 1 N N N 10.627 49.369 43.888 -2.188 2.499 9.897 C8B MNI 8 MNI C9B C9B C 0 1 N N N 8.668 48.567 45.207 -0.464 4.273 9.542 C9B MNI 9 MNI C6B C6B C 0 1 Y N N 6.972 49.459 43.108 -0.710 3.653 6.704 C6B MNI 10 MNI C7B C7B C 0 1 Y N N 6.109 49.884 42.101 -0.544 3.229 5.386 C7B MNI 11 MNI N1B N1B N 0 1 N N N 6.001 51.494 38.752 -0.786 2.403 2.686 N1B MNI 12 MNI C1A C1A C 0 1 N N N 5.093 52.008 37.729 -0.679 2.116 1.293 C1A MNI 13 MNI C2A C2A C 0 1 N N R 4.933 51.250 36.423 0.750 2.356 0.817 C2A MNI 14 MNI N5A N5A N 0 1 N N N 6.196 50.976 35.785 0.895 2.088 -0.623 N5A MNI 15 MNI C5M C5M C 0 1 N N R 6.233 49.646 35.209 1.080 3.374 -1.297 C5M MNI 16 MNI C6A C6A C 0 1 N N N 6.865 49.663 33.830 1.803 3.206 -2.624 C6A MNI 17 MNI O6A O6A O 0 1 N N N 8.112 50.372 33.904 0.986 2.438 -3.489 O6A MNI 18 MNI C4A C4A C 0 1 N N R 4.769 49.214 35.280 1.875 4.178 -0.282 C4A MNI 19 MNI O4A O4A O 0 1 N N N 4.613 47.801 35.341 1.762 5.566 -0.541 O4A MNI 20 MNI C3A C3A C 0 1 N N R 4.236 49.909 36.528 1.187 3.809 1.024 C3A MNI 21 MNI O3A O3A O 0 1 N N N 2.802 50.037 36.560 2.098 3.905 2.109 O3A MNI 22 MNI H3B H3B H 0 1 N N N 8.388 51.134 39.925 -1.271 -0.073 5.793 H3B MNI 23 MNI H4B H4B H 0 1 N N N 9.920 50.389 41.715 -1.564 0.677 8.120 H4B MNI 24 MNI H8B1 1H8B H 0 0 N N N 10.913 49.410 42.827 -2.184 2.968 10.884 H8B1 MNI 25 MNI H8B2 2H8B H 0 0 N N N 10.930 50.302 44.385 -1.919 1.445 10.008 H8B2 MNI 26 MNI H8B3 3H8B H 0 0 N N N 11.128 48.517 44.370 -3.197 2.561 9.482 H8B3 MNI 27 MNI H9B1 1H9B H 0 0 N N N 8.538 47.490 45.025 0.403 4.454 8.901 H9B1 MNI 28 MNI H9B2 2H9B H 0 0 N N N 9.379 48.716 46.033 -0.113 4.048 10.553 H9B2 MNI 29 MNI H9B3 3H9B H 0 0 N N N 7.698 49.013 45.472 -1.072 5.181 9.576 H9B3 MNI 30 MNI H6B H6B H 0 1 N N N 6.567 48.989 43.992 -0.553 4.700 6.952 H6B MNI 31 MNI H7B H7B H 0 1 N N N 5.044 49.747 42.217 -0.259 3.951 4.625 H7B MNI 32 MNI HN1B HN1B H 0 0 N N N 6.983 51.577 38.585 -1.092 3.341 2.960 HN1B MNI 33 MNI H1A1 1H1A H 0 0 N N N 5.465 53.008 37.461 -0.939 1.076 1.125 H1A1 MNI 34 MNI H1A2 2H1A H 0 0 N N N 4.100 51.940 38.198 -1.353 2.764 0.745 H1A2 MNI 35 MNI H2A H2A H 0 1 N N N 4.307 51.941 35.839 1.401 1.670 1.373 H2A MNI 36 MNI HN5A HN5A H 0 0 N N N 6.922 51.049 36.468 1.731 1.519 -0.761 HN5A MNI 37 MNI H5M H5M H 0 1 N N N 6.871 48.919 35.733 0.106 3.840 -1.493 H5M MNI 38 MNI H6A1 1H6A H 0 0 N N N 6.193 50.167 33.120 2.750 2.688 -2.469 H6A1 MNI 39 MNI H6A2 2H6A H 0 0 N N N 7.040 48.633 33.485 1.987 4.181 -3.074 H6A2 MNI 40 MNI HO6A HO6A H 0 0 N N N 8.440 50.529 33.026 0.232 2.121 -2.962 HO6A MNI 41 MNI H4A H4A H 0 1 N N N 4.214 49.497 34.373 2.939 3.913 -0.270 H4A MNI 42 MNI HO4A HO4A H 0 0 N N N 4.578 47.447 34.460 1.802 5.678 -1.505 HO4A MNI 43 MNI H3A H3A H 0 1 N N N 4.436 49.353 37.456 0.342 4.476 1.230 H3A MNI 44 MNI HO3A HO3A H 0 0 N N N 2.506 50.065 37.462 2.741 3.184 2.004 HO3A MNI 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MNI O1B C1B DOUB N N 1 MNI C1B N1B SING N N 2 MNI C1B C2B SING N N 3 MNI C2B C3B DOUB Y N 4 MNI C2B C7B SING Y N 5 MNI C3B C4B SING Y N 6 MNI C3B H3B SING N N 7 MNI C4B C5B DOUB Y N 8 MNI C4B H4B SING N N 9 MNI C5B C6B SING Y N 10 MNI C5B N5B SING N N 11 MNI N5B C8B SING N N 12 MNI N5B C9B SING N N 13 MNI C8B H8B1 SING N N 14 MNI C8B H8B2 SING N N 15 MNI C8B H8B3 SING N N 16 MNI C9B H9B1 SING N N 17 MNI C9B H9B2 SING N N 18 MNI C9B H9B3 SING N N 19 MNI C6B C7B DOUB Y N 20 MNI C6B H6B SING N N 21 MNI C7B H7B SING N N 22 MNI N1B C1A SING N N 23 MNI N1B HN1B SING N N 24 MNI C1A C2A SING N N 25 MNI C1A H1A1 SING N N 26 MNI C1A H1A2 SING N N 27 MNI C2A N5A SING N N 28 MNI C2A C3A SING N N 29 MNI C2A H2A SING N N 30 MNI N5A C5M SING N N 31 MNI N5A HN5A SING N N 32 MNI C5M C6A SING N N 33 MNI C5M C4A SING N N 34 MNI C5M H5M SING N N 35 MNI C6A O6A SING N N 36 MNI C6A H6A1 SING N N 37 MNI C6A H6A2 SING N N 38 MNI O6A HO6A SING N N 39 MNI C4A O4A SING N N 40 MNI C4A C3A SING N N 41 MNI C4A H4A SING N N 42 MNI O4A HO4A SING N N 43 MNI C3A O3A SING N N 44 MNI C3A H3A SING N N 45 MNI O3A HO3A SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MNI SMILES ACDLabs 10.04 "O=C(c1ccc(N(C)C)cc1)NCC2NC(CO)C(O)C2O" MNI SMILES_CANONICAL CACTVS 3.341 "CN(C)c1ccc(cc1)C(=O)NC[C@H]2N[C@H](CO)[C@@H](O)[C@@H]2O" MNI SMILES CACTVS 3.341 "CN(C)c1ccc(cc1)C(=O)NC[CH]2N[CH](CO)[CH](O)[CH]2O" MNI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc(cc1)C(=O)NC[C@@H]2[C@H]([C@@H]([C@H](N2)CO)O)O" MNI SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc(cc1)C(=O)NCC2C(C(C(N2)CO)O)O" MNI InChI InChI 1.03 "InChI=1S/C15H23N3O4/c1-18(2)10-5-3-9(4-6-10)15(22)16-7-11-13(20)14(21)12(8-19)17-11/h3-6,11-14,17,19-21H,7-8H2,1-2H3,(H,16,22)/t11-,12-,13-,14-/m1/s1" MNI InChIKey InChI 1.03 OULLPOCYJLHTGG-AAVRWANBSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MNI "SYSTEMATIC NAME" ACDLabs 10.04 "N-{[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-2-yl]methyl}-4-(dimethylamino)benzamide" MNI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-2-yl]methyl]-4-dimethylamino-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MNI "Create component" 2007-02-26 RCSB MNI "Modify descriptor" 2011-06-04 RCSB MNI "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MNI _pdbx_chem_comp_synonyms.name "1-(4-DIMETHYLAMINO)BENZOYLAMINO-1,2,5-TRIDEOXY-2,5-IMINO-D-MANNITOL" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##