data_MQG
#
_chem_comp.id MQG
_chem_comp.name "2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucopyranose"
_chem_comp.type "D-saccharide, beta linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C7 H16 N O7 P"
_chem_comp.mon_nstd_parent_comp_id GCS
_chem_comp.pdbx_synonyms
;~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]-methyl-phosphonamidic acid;
2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucose;
2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-D-glucose; 2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-glucose
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-19
_chem_comp.pdbx_modified_date 2020-07-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 257.178
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MQG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5B2E
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 MQG "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]-methyl-phosphonamidic acid" PDB ?
2 MQG "2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucose" PDB ?
3 MQG "2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-D-glucose" PDB ?
4 MQG "2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-glucose" PDB ?
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MQG C2 C2 C 0 1 N N R 19.717 51.917 22.098 0.287 0.228 0.109 C2 MQG 1
MQG C3 C3 C 0 1 N N R 19.041 53.056 21.370 -0.660 1.382 0.454 C3 MQG 2
MQG C4 C4 C 0 1 N N S 18.459 52.512 20.085 -2.009 1.144 -0.232 C4 MQG 3
MQG C5 C5 C 0 1 N N R 17.587 51.267 20.408 -2.563 -0.213 0.210 C5 MQG 4
MQG C6 C6 C 0 1 N N N 17.049 50.657 19.130 -3.882 -0.486 -0.516 C6 MQG 5
MQG C8 C8 C 0 1 N N N 22.240 53.159 25.187 4.407 0.103 0.812 C8 MQG 6
MQG O1 O1 O 0 1 N Y N 19.490 49.751 22.996 0.496 -2.180 0.169 O1 MQG 7
MQG C1 C1 C 0 1 N N R 18.724 50.777 22.402 -0.356 -1.094 0.537 C1 MQG 8
MQG O3 O3 O 0 1 N N N 19.928 54.187 21.065 -0.099 2.613 -0.007 O3 MQG 9
MQG O71 O71 O 0 1 N N N 23.028 51.867 22.753 2.673 -1.578 -0.404 O71 MQG 10
MQG P7 P7 P 0 1 N N N 21.926 52.816 23.463 2.852 -0.139 -0.108 P7 MQG 11
MQG O72 O72 O 0 1 N N N 22.129 54.174 22.805 2.910 0.689 -1.487 O72 MQG 12
MQG N2 N2 N 0 1 N N N 20.216 52.316 23.374 1.559 0.408 0.821 N2 MQG 13
MQG O4 O4 O 0 1 N N N 17.667 53.509 19.427 -2.923 2.177 0.141 O4 MQG 14
MQG O5 O5 O 0 1 N N N 18.357 50.288 21.164 -1.621 -1.239 -0.112 O5 MQG 15
MQG O6 O6 O 0 1 N N N 18.160 50.017 18.468 -4.458 -1.696 -0.020 O6 MQG 16
MQG H2 H1 H 0 1 N N N 20.532 51.521 21.474 0.469 0.213 -0.965 H2 MQG 17
MQG H3 H2 H 0 1 N N N 18.211 53.418 21.995 -0.802 1.428 1.533 H3 MQG 18
MQG H4 H3 H 0 1 N N N 19.283 52.195 19.429 -1.874 1.148 -1.313 H4 MQG 19
MQG H5 H4 H 0 1 N N N 16.734 51.602 21.017 -2.736 -0.203 1.286 H5 MQG 20
MQG H61 H5 H 0 1 N N N 16.626 51.442 18.485 -4.570 0.341 -0.343 H61 MQG 21
MQG H62 H6 H 0 1 N N N 16.271 49.916 19.364 -3.694 -0.585 -1.586 H62 MQG 22
MQG H7 H7 H 0 1 N N N 21.444 53.807 25.583 5.244 -0.251 0.211 H7 MQG 23
MQG H8 H8 H 0 1 N N N 22.259 52.215 25.751 4.539 1.163 1.030 H8 MQG 24
MQG H9 H9 H 0 1 N N N 23.211 53.666 25.289 4.367 -0.458 1.746 H9 MQG 25
MQG HO1 H10 H 0 1 N Y N 19.776 50.028 23.859 0.150 -3.050 0.410 HO1 MQG 26
MQG H1 H11 H 0 1 N N N 17.884 51.122 23.023 -0.500 -1.095 1.618 H1 MQG 27
MQG HO3 H12 H 0 1 N Y N 20.294 54.529 21.872 -0.647 3.389 0.178 HO3 MQG 28
MQG H13 H13 H 0 1 N N N 22.830 54.115 22.166 3.026 1.642 -1.369 H13 MQG 29
MQG HN21 H14 H 0 0 N N N 19.661 53.087 23.686 1.690 1.371 1.090 HN21 MQG 30
MQG HO4 H15 H 0 1 N Y N 18.207 54.266 19.233 -3.801 2.086 -0.254 HO4 MQG 31
MQG HO6 H16 H 0 1 N Y N 17.861 49.621 17.658 -5.298 -1.932 -0.436 HO6 MQG 32
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MQG O6 C6 SING N N 1
MQG C6 C5 SING N N 2
MQG O4 C4 SING N N 3
MQG C4 C5 SING N N 4
MQG C4 C3 SING N N 5
MQG C5 O5 SING N N 6
MQG O3 C3 SING N N 7
MQG O5 C1 SING N N 8
MQG C3 C2 SING N N 9
MQG C2 C1 SING N N 10
MQG C2 N2 SING N N 11
MQG C1 O1 SING N N 12
MQG O71 P7 DOUB N N 13
MQG O72 P7 SING N N 14
MQG N2 P7 SING N N 15
MQG P7 C8 SING N N 16
MQG C2 H2 SING N N 17
MQG C3 H3 SING N N 18
MQG C4 H4 SING N N 19
MQG C5 H5 SING N N 20
MQG C6 H61 SING N N 21
MQG C6 H62 SING N N 22
MQG C8 H7 SING N N 23
MQG C8 H8 SING N N 24
MQG C8 H9 SING N N 25
MQG O1 HO1 SING N N 26
MQG C1 H1 SING N N 27
MQG O3 HO3 SING N N 28
MQG O72 H13 SING N N 29
MQG N2 HN21 SING N N 30
MQG O4 HO4 SING N N 31
MQG O6 HO6 SING N N 32
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MQG InChI InChI 1.03 "InChI=1S/C7H16NO7P/c1-16(13,14)8-4-6(11)5(10)3(2-9)15-7(4)12/h3-7,9-12H,2H2,1H3,(H2,8,13,14)/t3-,4-,5-,6-,7-/m1/s1"
MQG InChIKey InChI 1.03 LKDVLOHRQALDHT-NYMZXIIRSA-N
MQG SMILES_CANONICAL CACTVS 3.385 "C[P](O)(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O"
MQG SMILES CACTVS 3.385 "C[P](O)(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O"
MQG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CP(=O)(N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O)O"
MQG SMILES "OpenEye OEToolkits" 2.0.4 "CP(=O)(NC1C(C(C(OC1O)CO)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id MQG
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.4
_pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]-methyl-phosphonamidic acid"
#
_pdbx_chem_comp_related.comp_id MQG
_pdbx_chem_comp_related.related_comp_id GCS
_pdbx_chem_comp_related.relationship_type "Carbohydrate core"
_pdbx_chem_comp_related.details ?
# #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
1 MQG C1 GCS C1 "Carbohydrate core"
2 MQG C2 GCS C2 "Carbohydrate core"
3 MQG C3 GCS C3 "Carbohydrate core"
4 MQG C4 GCS C4 "Carbohydrate core"
5 MQG C5 GCS C5 "Carbohydrate core"
6 MQG C6 GCS C6 "Carbohydrate core"
7 MQG N2 GCS N2 "Carbohydrate core"
8 MQG O1 GCS O1 "Carbohydrate core"
9 MQG O3 GCS O3 "Carbohydrate core"
10 MQG O4 GCS O4 "Carbohydrate core"
11 MQG O5 GCS O5 "Carbohydrate core"
12 MQG O6 GCS O6 "Carbohydrate core"
13 MQG H2 GCS H2 "Carbohydrate core"
14 MQG HO1 GCS HO1 "Carbohydrate core"
15 MQG H1 GCS H1 "Carbohydrate core"
16 MQG HO3 GCS HO3 "Carbohydrate core"
17 MQG HN21 GCS HN21 "Carbohydrate core"
18 MQG HO4 GCS HO4 "Carbohydrate core"
19 MQG HO6 GCS HO6 "Carbohydrate core"
20 MQG H3 GCS H3 "Carbohydrate core"
21 MQG H4 GCS H4 "Carbohydrate core"
22 MQG H5 GCS H5 "Carbohydrate core"
23 MQG H61 GCS H61 "Carbohydrate core"
24 MQG H62 GCS H62 "Carbohydrate core"
# #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
MQG "CARBOHYDRATE ISOMER" D PDB ?
MQG "CARBOHYDRATE RING" pyranose PDB ?
MQG "CARBOHYDRATE ANOMER" beta PDB ?
MQG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MQG "Create component" 2016-01-19 PDBJ
MQG "Initial release" 2016-08-10 RCSB
MQG "Other modification" 2020-07-03 RCSB
MQG "Modify parent residue" 2020-07-17 RCSB
MQG "Modify name" 2020-07-17 RCSB
MQG "Modify synonyms" 2020-07-17 RCSB
MQG "Modify internal type" 2020-07-17 RCSB
MQG "Modify linking type" 2020-07-17 RCSB
MQG "Modify atom id" 2020-07-17 RCSB
MQG "Modify component atom id" 2020-07-17 RCSB
MQG "Modify leaving atom flag" 2020-07-17 RCSB
##