data_MRG # _chem_comp.id MRG _chem_comp.name "N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C13 H20 N5 O7 P S" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-12-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.366 _chem_comp.one_letter_code G _chem_comp.three_letter_code MRG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1N5Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MRG P P P 0 1 N N N 9.970 148.807 -27.446 4.055 1.145 5.302 P MRG 1 MRG OP1 O1P O 0 1 N N N 9.837 149.436 -28.803 3.214 1.493 6.495 OP1 MRG 2 MRG OP2 O2P O 0 1 N N N 10.822 147.566 -27.263 4.751 2.400 4.556 OP2 MRG 3 MRG "O5'" O5* O 0 1 N N N 10.308 149.920 -26.349 3.269 0.379 4.111 "O5'" MRG 4 MRG N9 N9 N 0 1 Y N N 12.099 150.422 -22.702 1.818 1.923 -0.049 N9 MRG 5 MRG C4 C4 C 0 1 Y N N 11.928 150.394 -21.342 1.203 2.456 -1.146 C4 MRG 6 MRG N3 N3 N 0 1 N N N 12.262 151.431 -20.613 0.738 1.764 -2.210 N3 MRG 7 MRG C2 C2 C 0 1 N N N 12.111 151.181 -19.380 0.190 2.534 -3.125 C2 MRG 8 MRG N1 N1 N 0 1 N N N 11.633 149.964 -18.866 0.107 3.940 -2.989 N1 MRG 9 MRG C6 C6 C 0 1 N N N 11.407 148.821 -19.680 0.583 4.677 -1.895 C6 MRG 10 MRG O6 O6 O 0 1 N N N 11.173 147.684 -19.216 0.512 5.893 -1.774 O6 MRG 11 MRG C5 C5 C 0 1 Y N N 11.533 149.158 -21.045 1.175 3.810 -0.914 C5 MRG 12 MRG N7 N7 N 0 1 Y N N 11.358 148.428 -22.222 1.746 4.138 0.279 N7 MRG 13 MRG C8 C8 C 0 1 Y N N 11.814 149.193 -23.106 2.125 2.978 0.779 C8 MRG 14 MRG N2 N2 N 0 1 N N N 12.433 152.204 -18.407 -0.342 2.024 -4.280 N2 MRG 15 MRG C21 C21 C 0 1 N N N 12.737 153.511 -18.762 -0.317 0.613 -4.531 C21 MRG 16 MRG C22 C22 C 0 1 N N N 11.407 154.213 -18.981 -0.879 0.244 -5.902 C22 MRG 17 MRG C23 C23 C 0 1 N N N 11.965 155.459 -19.651 -2.344 0.648 -6.059 C23 MRG 18 MRG S24 S24 S 0 1 N N N 11.824 156.231 -21.265 -2.962 0.187 -7.705 S24 MRG 19 MRG "C2'" C2* C 0 1 N N N 13.611 151.670 -24.417 3.487 0.064 -0.229 "C2'" MRG 20 MRG "C5'" C5* C 0 1 N N N 10.930 151.118 -26.795 3.992 0.014 2.949 "C5'" MRG 21 MRG "C4'" C4* C 0 1 N N R 11.887 151.715 -25.872 3.045 -0.686 1.985 "C4'" MRG 22 MRG "O4'" O4* O 0 1 N N N 11.280 151.818 -24.534 2.007 0.248 1.620 "O4'" MRG 23 MRG "C1'" C1* C 0 1 N N R 12.345 151.594 -23.574 2.101 0.516 0.211 "C1'" MRG 24 MRG "C3'" C3* C 0 1 N N S 13.286 151.162 -25.782 3.731 -1.110 0.690 "C3'" MRG 25 MRG "O3'" O3* O 0 1 N N N 14.170 151.788 -26.753 3.068 -2.251 0.150 "O3'" MRG 26 MRG OP3 O3P O 0 1 N Y N ? ? ? 5.299 0.157 5.608 OP3 MRG 27 MRG HOP2 2HOP H 0 0 N N N 10.906 147.168 -26.404 5.237 3.061 5.094 HOP2 MRG 28 MRG H1 H1 H 0 1 N N N 11.443 149.908 -17.865 -0.333 4.457 -3.744 H1 MRG 29 MRG H8 H8 H 0 1 N N N 11.950 148.822 -24.135 2.623 2.834 1.729 H8 MRG 30 MRG H21 1H2 H 0 1 N N N 13.204 151.853 -17.838 -0.735 2.677 -4.912 H21 MRG 31 MRG H211 1H21 H 0 0 N N N 13.395 154.028 -18.025 -0.872 0.120 -3.727 H211 MRG 32 MRG H212 2H21 H 0 0 N N N 13.425 153.583 -19.635 0.730 0.299 -4.466 H212 MRG 33 MRG H221 1H22 H 0 0 N N N 10.620 153.648 -19.533 -0.270 0.715 -6.685 H221 MRG 34 MRG H222 2H22 H 0 0 N N N 10.759 154.364 -18.086 -0.786 -0.843 -6.025 H222 MRG 35 MRG H231 1H23 H 0 0 N N N 11.668 156.276 -18.952 -2.471 1.728 -5.941 H231 MRG 36 MRG H232 2H23 H 0 0 N N N 13.066 155.344 -19.520 -2.964 0.149 -5.308 H232 MRG 37 MRG H24 H24 H 0 1 N N N 12.172 157.009 -21.683 -2.192 -0.900 -7.844 H24 MRG 38 MRG "H2'" 1H2* H 0 1 N N N 14.059 152.690 -24.431 4.226 0.851 -0.038 "H2'" MRG 39 MRG "H2''" 2H2* H 0 0 N N N 14.472 151.136 -23.951 3.511 -0.188 -1.294 "H2''" MRG 40 MRG "H5'" 1H5* H 0 1 N N N 11.411 150.950 -27.786 4.402 0.913 2.485 "H5'" MRG 41 MRG "H5''" 2H5* H 0 0 N N N 10.153 151.867 -27.075 4.806 -0.656 3.229 "H5''" MRG 42 MRG "H4'" H4* H 0 1 N N N 12.084 152.706 -26.342 2.570 -1.532 2.493 "H4'" MRG 43 MRG "H1'" H1* H 0 1 N N N 12.433 152.353 -22.762 1.311 -0.048 -0.296 "H1'" MRG 44 MRG "H3'" H3* H 0 1 N N N 13.385 150.066 -25.962 4.787 -1.363 0.810 "H3'" MRG 45 MRG "HO3'" H3T H 0 0 N Y N 13.963 151.464 -27.622 2.118 -2.059 0.184 "HO3'" MRG 46 MRG HOP3 3HOP H 0 0 N N N 0.084 -0.397 0.858 5.887 0.356 6.367 HOP3 MRG 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MRG P OP1 DOUB N N 1 MRG P OP2 SING N N 2 MRG P "O5'" SING N N 3 MRG P OP3 SING N N 4 MRG OP2 HOP2 SING N N 5 MRG "O5'" "C5'" SING N N 6 MRG N9 C4 SING Y N 7 MRG N9 C8 SING Y N 8 MRG N9 "C1'" SING N N 9 MRG C4 N3 SING N N 10 MRG C4 C5 DOUB Y N 11 MRG N3 C2 DOUB N N 12 MRG C2 N1 SING N N 13 MRG C2 N2 SING N N 14 MRG N1 C6 SING N N 15 MRG N1 H1 SING N N 16 MRG C6 O6 DOUB N N 17 MRG C6 C5 SING N N 18 MRG C5 N7 SING Y N 19 MRG N7 C8 DOUB Y N 20 MRG C8 H8 SING N N 21 MRG N2 C21 SING N N 22 MRG N2 H21 SING N N 23 MRG C21 C22 SING N N 24 MRG C21 H211 SING N N 25 MRG C21 H212 SING N N 26 MRG C22 C23 SING N N 27 MRG C22 H221 SING N N 28 MRG C22 H222 SING N N 29 MRG C23 S24 SING N N 30 MRG C23 H231 SING N N 31 MRG C23 H232 SING N N 32 MRG S24 H24 SING N N 33 MRG "C2'" "C1'" SING N N 34 MRG "C2'" "C3'" SING N N 35 MRG "C2'" "H2'" SING N N 36 MRG "C2'" "H2''" SING N N 37 MRG "C5'" "C4'" SING N N 38 MRG "C5'" "H5'" SING N N 39 MRG "C5'" "H5''" SING N N 40 MRG "C4'" "O4'" SING N N 41 MRG "C4'" "C3'" SING N N 42 MRG "C4'" "H4'" SING N N 43 MRG "O4'" "C1'" SING N N 44 MRG "C1'" "H1'" SING N N 45 MRG "C3'" "O3'" SING N N 46 MRG "C3'" "H3'" SING N N 47 MRG "O3'" "HO3'" SING N N 48 MRG OP3 HOP3 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MRG SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(NCCCS)N1)C3OC(C(O)C3)COP(=O)(O)O" MRG SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCCCS" MRG SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCCCS" MRG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)NCCCS" MRG SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=C(NC2=O)NCCCS" MRG InChI InChI 1.03 "InChI=1S/C13H20N5O7PS/c19-7-4-9(25-8(7)5-24-26(21,22)23)18-6-15-10-11(18)16-13(17-12(10)20)14-2-1-3-27/h6-9,19,27H,1-5H2,(H2,21,22,23)(H2,14,16,17,20)/t7-,8+,9+/m0/s1" MRG InChIKey InChI 1.03 WHYGVXCTIDHHFD-DJLDLDEBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MRG "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-N-(3-sulfanylpropyl)guanosine 5'-(dihydrogen phosphate) ; MRG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[6-oxo-2-(3-sulfanylpropylamino)-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MRG "Create component" 2002-12-09 RCSB MRG "Modify descriptor" 2011-06-04 RCSB #