data_MSI
#
_chem_comp.id MSI
_chem_comp.name "1-METHYL-5-(2-PHENOXYMETHYL-PYRROLIDINE-1-SULFONYL)-1H-INDOLE-2,3-DIONE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H20 N2 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 400.448
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MSI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1GFW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MSI S1 S1 S 0 1 N N N N N N 37.832 31.958 27.609 -1.376 1.145 -0.100 S1 MSI 1
MSI N1 N1 N 0 1 N N N N N N 34.899 36.018 31.049 0.552 -0.177 5.342 N1 MSI 2
MSI N2 N2 N 0 1 N N N N N N 39.573 32.069 27.847 -1.768 -0.279 -0.846 N2 MSI 3
MSI O1 O1 O 0 1 N N N N N N 41.050 32.581 25.002 0.587 -1.201 -3.560 O1 MSI 4
MSI O2 O2 O 0 1 N N N N N N 33.615 35.333 32.895 2.679 -0.648 6.022 O2 MSI 5
MSI O3 O3 O 0 1 N N N N N N 34.141 32.711 31.675 3.242 -0.207 3.152 O3 MSI 6
MSI O4 O4 O 0 1 N N N N N N 37.453 30.645 28.040 -2.597 1.859 0.033 O4 MSI 7
MSI O5 O5 O 0 1 N N N N N N 37.759 32.316 26.243 -0.213 1.621 -0.763 O5 MSI 8
MSI C2 C2 C 0 1 N N N N N N 34.447 35.109 32.008 1.872 -0.358 5.164 C2 MSI 9
MSI C3 C3 C 0 1 N N N N N N 35.112 33.759 31.846 2.166 -0.136 3.710 C3 MSI 10
MSI C4 C4 C 0 1 Y N N N N N 36.500 32.931 29.906 0.462 0.493 1.805 C4 MSI 11
MSI C5 C5 C 0 1 Y N N N N N 36.970 33.228 28.581 -0.865 0.757 1.541 C5 MSI 12
MSI C6 C6 C 0 1 Y N N N N N 36.777 34.539 28.023 -1.798 0.719 2.564 C6 MSI 13
MSI C7 C7 C 0 1 Y N N N N N 36.120 35.562 28.763 -1.414 0.417 3.857 C7 MSI 14
MSI C8 C8 C 0 1 Y N N N N N 35.639 35.246 30.063 -0.083 0.141 4.145 C8 MSI 15
MSI C9 C9 C 0 1 Y N N N N N 35.811 33.971 30.606 0.860 0.187 3.106 C9 MSI 16
MSI C20 C20 C 0 1 N N S N N N 40.258 33.341 27.486 -0.844 -1.127 -1.615 C20 MSI 17
MSI C10 C10 C 0 1 N N N N N N 40.965 33.931 28.703 -1.643 -2.357 -2.094 C10 MSI 18
MSI C11 C11 C 0 1 N N N N N N 40.635 32.993 29.842 -2.832 -2.411 -1.099 C11 MSI 19
MSI C12 C12 C 0 1 N N N N N N 40.061 31.748 29.193 -3.102 -0.906 -0.855 C12 MSI 20
MSI C13 C13 C 0 1 N N N N N N 41.291 33.239 26.293 -0.298 -0.359 -2.820 C13 MSI 21
MSI C14 C14 C 0 1 Y N N N N N 39.893 32.891 24.233 1.038 -0.469 -4.612 C14 MSI 22
MSI C15 C15 C 0 1 Y N N N N N 39.547 34.247 23.909 1.925 -1.029 -5.519 C15 MSI 23
MSI C16 C16 C 0 1 Y N N N N N 38.407 34.544 23.100 2.382 -0.283 -6.588 C16 MSI 24
MSI C17 C17 C 0 1 Y N N N N N 37.605 33.488 22.607 1.956 1.021 -6.755 C17 MSI 25
MSI C18 C18 C 0 1 Y N N N N N 37.940 32.128 22.919 1.071 1.582 -5.852 C18 MSI 26
MSI C19 C19 C 0 1 Y N N N N N 39.077 31.833 23.728 0.607 0.838 -4.785 C19 MSI 27
MSI C1 C1 C 0 1 N N N N N N 34.732 37.470 31.083 -0.130 -0.305 6.631 C1 MSI 28
MSI HC4 HC4 H 0 1 N N N N N N 36.661 31.942 30.368 1.190 0.523 1.008 HC4 MSI 29
MSI HC6 HC6 H 0 1 N N N N N N 37.140 34.764 27.006 -2.835 0.927 2.350 HC6 MSI 30
MSI HC7 HC7 H 0 1 N N N N N N 35.987 36.572 28.340 -2.151 0.391 4.646 HC7 MSI 31
MSI H20 H20 H 0 1 N N N N N N 39.437 34.006 27.129 -0.021 -1.445 -0.974 H20 MSI 32
MSI H101 1H10 H 0 0 N N N N N N 42.058 34.093 28.554 -1.040 -3.262 -2.024 H101 MSI 33
MSI H102 2H10 H 0 0 N N N N N N 40.702 34.995 28.904 -1.999 -2.208 -3.113 H102 MSI 34
MSI H111 1H11 H 0 0 N N N N N N 41.498 32.788 30.517 -2.545 -2.912 -0.175 H111 MSI 35
MSI H112 2H11 H 0 0 N N N N N N 39.967 33.443 30.613 -3.698 -2.895 -1.552 H112 MSI 36
MSI H121 1H12 H 0 0 N N N N N N 39.272 31.272 29.822 -3.597 -0.760 0.104 H121 MSI 37
MSI H122 2H12 H 0 0 N N N N N N 40.791 30.905 29.184 -3.709 -0.494 -1.662 H122 MSI 38
MSI H131 1H13 H 0 0 N N N N N N 42.215 32.779 26.714 -1.125 -0.050 -3.459 H131 MSI 39
MSI H132 2H13 H 0 0 N N N N N N 41.610 34.281 26.061 0.242 0.522 -2.475 H132 MSI 40
MSI HC15 HC15 H 0 0 N N N N N N 40.168 35.075 24.288 2.259 -2.048 -5.390 HC15 MSI 41
MSI HC16 HC16 H 0 0 N N N N N N 38.146 35.587 22.856 3.073 -0.718 -7.294 HC16 MSI 42
MSI HC17 HC17 H 0 0 N N N N N N 36.725 33.723 21.984 2.314 1.603 -7.591 HC17 MSI 43
MSI HC18 HC18 H 0 0 N N N N N N 37.318 31.302 22.533 0.740 2.601 -5.983 HC18 MSI 44
MSI HC19 HC19 H 0 0 N N N N N N 39.325 30.784 23.963 -0.083 1.276 -4.080 HC19 MSI 45
MSI HC11 1HC1 H 0 0 N N N N N N 35.092 38.195 30.317 0.594 -0.565 7.403 HC11 MSI 46
MSI HC12 2HC1 H 0 0 N N N N N N 33.638 37.655 31.198 -0.607 0.641 6.885 HC12 MSI 47
MSI HC13 3HC1 H 0 0 N N N N N N 35.152 37.809 32.058 -0.887 -1.087 6.565 HC13 MSI 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MSI S1 N2 SING N N 1
MSI S1 O4 DOUB N N 2
MSI S1 O5 DOUB N N 3
MSI S1 C5 SING N N 4
MSI N1 C2 SING N N 5
MSI N1 C8 SING N N 6
MSI N1 C1 SING N N 7
MSI N2 C20 SING N N 8
MSI N2 C12 SING N N 9
MSI O1 C13 SING N N 10
MSI O1 C14 SING N N 11
MSI O2 C2 DOUB N N 12
MSI O3 C3 DOUB N N 13
MSI C2 C3 SING N N 14
MSI C3 C9 SING N N 15
MSI C4 C5 DOUB Y N 16
MSI C4 C9 SING Y N 17
MSI C4 HC4 SING N N 18
MSI C5 C6 SING Y N 19
MSI C6 C7 DOUB Y N 20
MSI C6 HC6 SING N N 21
MSI C7 C8 SING Y N 22
MSI C7 HC7 SING N N 23
MSI C8 C9 DOUB Y N 24
MSI C20 C10 SING N N 25
MSI C20 C13 SING N N 26
MSI C20 H20 SING N N 27
MSI C10 C11 SING N N 28
MSI C10 H101 SING N N 29
MSI C10 H102 SING N N 30
MSI C11 C12 SING N N 31
MSI C11 H111 SING N N 32
MSI C11 H112 SING N N 33
MSI C12 H121 SING N N 34
MSI C12 H122 SING N N 35
MSI C13 H131 SING N N 36
MSI C13 H132 SING N N 37
MSI C14 C15 DOUB Y N 38
MSI C14 C19 SING Y N 39
MSI C15 C16 SING Y N 40
MSI C15 HC15 SING N N 41
MSI C16 C17 DOUB Y N 42
MSI C16 HC16 SING N N 43
MSI C17 C18 SING Y N 44
MSI C17 HC17 SING N N 45
MSI C18 C19 DOUB Y N 46
MSI C18 HC18 SING N N 47
MSI C19 HC19 SING N N 48
MSI C1 HC11 SING N N 49
MSI C1 HC12 SING N N 50
MSI C1 HC13 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MSI SMILES ACDLabs 10.04 "O=S(=O)(c2cc1C(=O)C(=O)N(c1cc2)C)N4C(COc3ccccc3)CCC4"
MSI SMILES_CANONICAL CACTVS 3.341 "CN1C(=O)C(=O)c2cc(ccc12)[S](=O)(=O)N3CCC[C@H]3COc4ccccc4"
MSI SMILES CACTVS 3.341 "CN1C(=O)C(=O)c2cc(ccc12)[S](=O)(=O)N3CCC[CH]3COc4ccccc4"
MSI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN1c2ccc(cc2C(=O)C1=O)S(=O)(=O)[N@@]3CCC[C@H]3COc4ccccc4"
MSI SMILES "OpenEye OEToolkits" 1.5.0 "CN1c2ccc(cc2C(=O)C1=O)S(=O)(=O)N3CCCC3COc4ccccc4"
MSI InChI InChI 1.03 "InChI=1S/C20H20N2O5S/c1-21-18-10-9-16(12-17(18)19(23)20(21)24)28(25,26)22-11-5-6-14(22)13-27-15-7-3-2-4-8-15/h2-4,7-10,12,14H,5-6,11,13H2,1H3/t14-/m0/s1"
MSI InChIKey InChI 1.03 PFAYCUAUBOGVDX-AWEZNQCLSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MSI "SYSTEMATIC NAME" ACDLabs 10.04 "1-methyl-5-{[(2S)-2-(phenoxymethyl)pyrrolidin-1-yl]sulfonyl}-1H-indole-2,3-dione"
MSI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-methyl-5-[(1R,2S)-2-(phenoxymethyl)pyrrolidin-1-yl]sulfonyl-indole-2,3-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MSI "Create component" 1999-07-08 RCSB
MSI "Modify descriptor" 2011-06-04 RCSB
MSI "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id MSI
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C3
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#