data_MTH # _chem_comp.id MTH _chem_comp.name "2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-METHYLSULFANYLMETHYL-TETRAHYDRO-FURAN-3,4-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5'-DEOXY-5'-(METHYLTHIO)-TUBERCIDIN" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-12-12 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 296.345 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MTH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1NC1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MTH CS CS C 0 1 N N N 56.122 68.580 22.581 5.642 -2.155 0.339 CS MTH 1 MTH "S5'" S5* S 0 1 N N N 55.506 70.222 23.127 4.348 -1.439 -0.712 "S5'" MTH 2 MTH "C5'" C5* C 0 1 N N N 56.164 71.262 21.783 3.716 -0.151 0.399 "C5'" MTH 3 MTH "C4'" C4* C 0 1 N N S 57.624 71.662 21.993 2.583 0.608 -0.294 "C4'" MTH 4 MTH "O4'" O4* O 0 1 N N N 58.186 72.179 20.746 1.455 -0.263 -0.483 "O4'" MTH 5 MTH "C2'" C2* C 0 1 N N R 57.637 74.050 22.074 0.612 1.493 0.834 "C2'" MTH 6 MTH "O2'" O2* O 0 1 N N N 58.456 75.195 22.479 -0.153 2.699 0.760 "O2'" MTH 7 MTH "C3'" C3* C 0 1 N N S 57.849 72.763 23.005 2.117 1.779 0.594 "C3'" MTH 8 MTH "O3'" O3* O 0 1 N N N 59.247 72.659 23.481 2.289 3.026 -0.082 "O3'" MTH 9 MTH "C1'" C1* C 0 1 N N R 57.932 73.616 20.586 0.268 0.548 -0.345 "C1'" MTH 10 MTH N9 N9 N 0 1 Y N N 56.756 73.755 19.522 -0.892 -0.287 -0.021 N9 MTH 11 MTH C8 C8 C 0 1 Y N N 56.885 73.457 18.167 -0.831 -1.521 0.572 C8 MTH 12 MTH C7 C7 C 0 1 Y N N 55.774 73.630 17.472 -2.071 -2.013 0.728 C7 MTH 13 MTH C5 C5 C 0 1 Y N N 54.854 74.065 18.410 -2.992 -1.013 0.193 C5 MTH 14 MTH C6 C6 C 0 1 Y N N 53.472 74.426 18.349 -4.386 -0.915 0.058 C6 MTH 15 MTH N6 N6 N 0 1 N N N 52.767 74.389 17.212 -5.213 -1.935 0.493 N6 MTH 16 MTH N1 N1 N 0 1 Y N N 52.865 74.821 19.529 -4.891 0.182 -0.497 N1 MTH 17 MTH C2 C2 C 0 1 Y N N 53.565 74.859 20.674 -4.104 1.159 -0.913 C2 MTH 18 MTH N3 N3 N 0 1 Y N N 54.866 74.541 20.843 -2.794 1.110 -0.807 N3 MTH 19 MTH C4 C4 C 0 1 Y N N 55.444 74.153 19.671 -2.194 0.055 -0.259 C4 MTH 20 MTH HCS1 1HCS H 0 0 N N N 57.220 68.506 22.400 6.374 -1.386 0.589 HCS1 MTH 21 MTH HCS2 2HCS H 0 0 N N N 55.719 67.944 23.403 5.194 -2.540 1.255 HCS2 MTH 22 MTH HCS3 3HCS H 0 0 N N N 55.843 68.274 21.546 6.135 -2.967 -0.194 HCS3 MTH 23 MTH "H5'1" 1H5* H 0 0 N N N 55.524 72.162 21.628 3.340 -0.612 1.312 "H5'1" MTH 24 MTH "H5'2" 2H5* H 0 0 N N N 56.026 70.766 20.794 4.520 0.542 0.646 "H5'2" MTH 25 MTH "H4'1" 1H4* H 0 0 N N N 58.106 70.726 22.360 2.925 0.986 -1.257 "H4'1" MTH 26 MTH "H2'1" 1H2* H 0 0 N N N 56.585 74.405 22.177 0.456 0.995 1.791 "H2'1" MTH 27 MTH HO21 1HO2 H 0 0 N N N 58.330 75.958 21.927 0.106 3.241 1.518 HO21 MTH 28 MTH "H3'1" 1H3* H 0 0 N N N 57.201 72.758 23.912 2.661 1.780 1.539 "H3'1" MTH 29 MTH HO31 1HO3 H 0 0 N N N 59.388 73.351 24.117 1.926 3.710 0.498 HO31 MTH 30 MTH "H1'1" 1H1* H 0 0 N N N 58.734 74.273 20.177 0.086 1.119 -1.255 "H1'1" MTH 31 MTH HC81 1HC8 H 0 0 N N N 57.808 73.106 17.676 0.078 -2.024 0.869 HC81 MTH 32 MTH HC71 1HC7 H 0 0 N N N 55.648 73.456 16.390 -2.336 -2.965 1.165 HC71 MTH 33 MTH HN61 1HN6 H 0 0 N N N 52.857 73.450 16.825 -4.831 -2.730 0.896 HN61 MTH 34 MTH HN62 2HN6 H 0 0 N N N 51.781 74.647 17.169 -6.174 -1.855 0.394 HN62 MTH 35 MTH HC21 1HC2 H 0 0 N N N 53.013 75.186 21.571 -4.556 2.033 -1.359 HC21 MTH 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MTH CS "S5'" SING N N 1 MTH CS HCS1 SING N N 2 MTH CS HCS2 SING N N 3 MTH CS HCS3 SING N N 4 MTH "S5'" "C5'" SING N N 5 MTH "C5'" "C4'" SING N N 6 MTH "C5'" "H5'1" SING N N 7 MTH "C5'" "H5'2" SING N N 8 MTH "C4'" "O4'" SING N N 9 MTH "C4'" "C3'" SING N N 10 MTH "C4'" "H4'1" SING N N 11 MTH "O4'" "C1'" SING N N 12 MTH "C2'" "O2'" SING N N 13 MTH "C2'" "C3'" SING N N 14 MTH "C2'" "C1'" SING N N 15 MTH "C2'" "H2'1" SING N N 16 MTH "O2'" HO21 SING N N 17 MTH "C3'" "O3'" SING N N 18 MTH "C3'" "H3'1" SING N N 19 MTH "O3'" HO31 SING N N 20 MTH "C1'" N9 SING N N 21 MTH "C1'" "H1'1" SING N N 22 MTH N9 C8 SING Y N 23 MTH N9 C4 SING Y N 24 MTH C8 C7 DOUB Y N 25 MTH C8 HC81 SING N N 26 MTH C7 C5 SING Y N 27 MTH C7 HC71 SING N N 28 MTH C5 C6 DOUB Y N 29 MTH C5 C4 SING Y N 30 MTH C6 N6 SING N N 31 MTH C6 N1 SING Y N 32 MTH N6 HN61 SING N N 33 MTH N6 HN62 SING N N 34 MTH N1 C2 DOUB Y N 35 MTH C2 N3 SING Y N 36 MTH C2 HC21 SING N N 37 MTH N3 C4 DOUB Y N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MTH SMILES ACDLabs 10.04 "S(C)CC3OC(n2ccc1c(ncnc12)N)C(O)C3O" MTH SMILES_CANONICAL CACTVS 3.341 "CSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2ccc3c(N)ncnc23" MTH SMILES CACTVS 3.341 "CSC[CH]1O[CH]([CH](O)[CH]1O)n2ccc3c(N)ncnc23" MTH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2ccc3c2ncnc3N)O)O" MTH SMILES "OpenEye OEToolkits" 1.5.0 "CSCC1C(C(C(O1)n2ccc3c2ncnc3N)O)O" MTH InChI InChI 1.03 "InChI=1S/C12H16N4O3S/c1-20-4-7-8(17)9(18)12(19-7)16-3-2-6-10(13)14-5-15-11(6)16/h2-3,5,7-9,12,17-18H,4H2,1H3,(H2,13,14,15)/t7-,8-,9-,12-/m1/s1" MTH InChIKey InChI 1.03 WBPLMFVTQMIPLW-MFYTUXHUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MTH "SYSTEMATIC NAME" ACDLabs 10.04 "7-(5-S-methyl-5-thio-beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine" MTH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5S)-2-(4-aminopyrrolo[2,3-d]pyrimidin-7-yl)-5-(methylsulfanylmethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MTH "Create component" 2002-12-12 RCSB MTH "Modify descriptor" 2011-06-04 RCSB MTH "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MTH _pdbx_chem_comp_synonyms.name "5'-DEOXY-5'-(METHYLTHIO)-TUBERCIDIN" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##