data_MTM # _chem_comp.id MTM _chem_comp.name "(3S,4R)-2-(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-5-[(METHYLSULFANYL)METHYL]PYRROLIDINE-3,4-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1S)-1-(9-DEAZAADENIN-9-YL)-1,4,5-TRIDEOXY-1,4-IMINO-5-METHYLTHIO-D-RIBITOL" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-10-09 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 297.377 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MTM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1K27 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MTM CS CS C 0 1 N N N 58.521 13.493 31.901 5.791 -2.134 0.141 CS MTM 1 MTM "S5'" S5* S 0 1 N N N 58.589 14.539 30.423 4.459 -1.371 -0.825 "S5'" MTM 2 MTM "C5'" C5* C 0 1 N N N 59.252 16.089 31.130 3.760 -0.259 0.426 "C5'" MTM 3 MTM "C4'" C4* C 0 1 N N S 60.746 16.041 31.436 2.586 0.514 -0.178 "C4'" MTM 4 MTM "N4'" N4* N 0 1 N N N 61.439 15.533 30.247 1.442 -0.395 -0.446 "N4'" MTM 5 MTM "C2'" C2* C 0 1 N N S 61.980 17.843 30.396 0.554 1.716 0.359 "C2'" MTM 6 MTM "O2'" O2* O 0 1 N N N 63.342 18.363 30.601 0.456 2.896 -0.442 "O2'" MTM 7 MTM "C3'" C3* C 0 1 N N R 61.341 17.407 31.786 2.009 1.522 0.849 "C3'" MTM 8 MTM "O3'" O3* O 0 1 N N N 62.374 17.284 32.851 2.725 2.758 0.813 "O3'" MTM 9 MTM "C1'" C1* C 0 1 N N S 62.015 16.601 29.438 0.242 0.468 -0.487 "C1'" MTM 10 MTM C9 C9 C 0 1 Y N N 61.139 16.703 28.093 -0.939 -0.267 0.091 C9 MTM 11 MTM C8 C8 C 0 1 Y N N 60.864 15.642 27.236 -0.892 -1.299 0.962 C8 MTM 12 MTM N7 N7 N 0 1 Y N N 60.124 15.957 26.190 -2.172 -1.694 1.242 N7 MTM 13 MTM C5 C5 C 0 1 Y N N 59.881 17.311 26.347 -3.028 -0.918 0.540 C5 MTM 14 MTM C6 C6 C 0 1 N N R 59.157 18.278 25.586 -4.536 -0.941 0.454 C6 MTM 15 MTM N6 N6 N 0 1 N N N 58.520 17.965 24.452 -4.971 -1.948 -0.522 N6 MTM 16 MTM N1 N1 N 0 1 N N N 59.132 19.586 26.067 -4.946 0.406 0.013 N1 MTM 17 MTM C2 C2 C 0 1 N N N 59.775 19.913 27.212 -4.183 1.099 -0.893 C2 MTM 18 MTM N3 N3 N 0 1 N N N 60.484 19.082 28.004 -2.893 0.929 -0.986 N3 MTM 19 MTM C4 C4 C 0 1 Y N N 60.494 17.795 27.509 -2.294 -0.002 -0.171 C4 MTM 20 MTM HCS1 1HCS H 0 0 N N N 57.948 13.913 32.761 6.481 -1.362 0.483 HCS1 MTM 21 MTM HCS2 2HCS H 0 0 N N N 58.117 12.548 31.470 5.366 -2.649 1.002 HCS2 MTM 22 MTM HCS3 3HCS H 0 0 N N N 59.479 13.394 32.464 6.328 -2.850 -0.482 HCS3 MTM 23 MTM "H5'1" 1H5* H 0 0 N N N 58.676 16.384 32.038 3.411 -0.845 1.277 "H5'1" MTM 24 MTM "H5'2" 2H5* H 0 0 N N N 59.015 16.954 30.468 4.525 0.442 0.757 "H5'2" MTM 25 MTM "H4'" H4* H 0 1 N N N 60.880 15.384 32.327 2.892 1.026 -1.089 "H4'" MTM 26 MTM HN4 HN4 H 0 1 N N N 60.824 14.940 29.689 1.572 -0.756 -1.379 HN4 MTM 27 MTM "H2'" H2* H 0 1 N N N 61.361 18.651 29.940 -0.127 1.778 1.207 "H2'" MTM 28 MTM "HO'2" 2HO* H 0 0 N N N 63.724 18.623 29.771 0.660 3.644 0.136 "HO'2" MTM 29 MTM "H3'" H3* H 0 1 N N N 60.603 18.139 32.190 2.025 1.097 1.852 "H3'" MTM 30 MTM H3T H3T H 0 1 N N N 62.743 18.132 33.068 2.268 3.362 1.415 H3T MTM 31 MTM "H1'" H1* H 0 1 N N N 63.062 16.467 29.080 0.030 0.761 -1.516 "H1'" MTM 32 MTM H8 H8 H 0 1 N N N 61.214 14.606 27.378 0.006 -1.740 1.368 H8 MTM 33 MTM H7 H7 H 0 1 N N N 59.820 15.321 25.453 -2.424 -2.411 1.844 H7 MTM 34 MTM H6 H6 H 0 1 N N N 58.818 17.571 24.793 -4.963 -1.159 1.433 H6 MTM 35 MTM H61 1H6 H 0 1 N N N 57.884 17.194 24.657 -5.980 -1.920 -0.538 H61 MTM 36 MTM H62 2H6 H 0 1 N N N 58.003 18.656 23.908 -4.658 -1.630 -1.426 H62 MTM 37 MTM HN1 HN1 H 0 1 N N N 58.158 19.874 26.155 -5.758 0.803 0.364 HN1 MTM 38 MTM H2 H2 H 0 1 N N N 59.715 20.967 27.533 -4.666 1.807 -1.551 H2 MTM 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MTM CS "S5'" SING N N 1 MTM CS HCS1 SING N N 2 MTM CS HCS2 SING N N 3 MTM CS HCS3 SING N N 4 MTM "S5'" "C5'" SING N N 5 MTM "C5'" "C4'" SING N N 6 MTM "C5'" "H5'1" SING N N 7 MTM "C5'" "H5'2" SING N N 8 MTM "C4'" "N4'" SING N N 9 MTM "C4'" "C3'" SING N N 10 MTM "C4'" "H4'" SING N N 11 MTM "N4'" "C1'" SING N N 12 MTM "N4'" HN4 SING N N 13 MTM "C2'" "O2'" SING N N 14 MTM "C2'" "C3'" SING N N 15 MTM "C2'" "C1'" SING N N 16 MTM "C2'" "H2'" SING N N 17 MTM "O2'" "HO'2" SING N N 18 MTM "C3'" "O3'" SING N N 19 MTM "C3'" "H3'" SING N N 20 MTM "O3'" H3T SING N N 21 MTM "C1'" C9 SING N N 22 MTM "C1'" "H1'" SING N N 23 MTM C9 C8 DOUB Y N 24 MTM C9 C4 SING Y N 25 MTM C8 N7 SING Y N 26 MTM C8 H8 SING N N 27 MTM N7 C5 SING Y N 28 MTM N7 H7 SING N N 29 MTM C5 C6 SING N N 30 MTM C5 C4 DOUB Y N 31 MTM C6 N6 SING N N 32 MTM C6 N1 SING N N 33 MTM C6 H6 SING N N 34 MTM N6 H61 SING N N 35 MTM N6 H62 SING N N 36 MTM N1 C2 SING N N 37 MTM N1 HN1 SING N N 38 MTM C2 N3 DOUB N N 39 MTM C2 H2 SING N N 40 MTM N3 C4 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MTM SMILES ACDLabs 10.04 "OC3C(O)C(c2c1N=CNC(N)c1nc2)NC3CSC" MTM SMILES_CANONICAL CACTVS 3.341 "CSC[C@H]1N[C@H]([C@H](O)[C@@H]1O)c2c[nH]c3[C@H](N)NC=Nc23" MTM SMILES CACTVS 3.341 "CSC[CH]1N[CH]([CH](O)[CH]1O)c2c[nH]c3[CH](N)NC=Nc23" MTM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CSC[C@@H]1[C@H]([C@H]([C@@H](N1)c2c[nH]c3c2N=CNC3N)O)O" MTM SMILES "OpenEye OEToolkits" 1.5.0 "CSCC1C(C(C(N1)c2c[nH]c3c2N=CNC3N)O)O" MTM InChI InChI 1.03 "InChI=1S/C12H19N5O2S/c1-20-3-6-10(18)11(19)8(17-6)5-2-14-9-7(5)15-4-16-12(9)13/h2,4,6,8,10-12,14,17-19H,3,13H2,1H3,(H,15,16)/t6-,8+,10-,11+,12?/m1/s1" MTM InChIKey InChI 1.03 YLCQGEBEQIBOOJ-BOFBLULFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MTM "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3S,4R,5S)-2-[(4R)-4-amino-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl]-5-[(methylsulfanyl)methyl]pyrrolidine-3,4-diol" MTM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4R,5S)-2-(4-amino-4,5-dihydro-3H-pyrrolo[4,5-d]pyrimidin-7-yl)-5-(methylsulfanylmethyl)pyrrolidine-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MTM "Create component" 2001-10-09 RCSB MTM "Modify descriptor" 2011-06-04 RCSB MTM "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MTM _pdbx_chem_comp_synonyms.name "(1S)-1-(9-DEAZAADENIN-9-YL)-1,4,5-TRIDEOXY-1,4-IMINO-5-METHYLTHIO-D-RIBITOL" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##