data_MVL # _chem_comp.id MVL _chem_comp.name "(5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H12 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Mannoimidazole _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-01-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 200.192 _chem_comp.one_letter_code ? _chem_comp.three_letter_code MVL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VMF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal MVL C1 C1 C 0 1 Y N N 27.310 45.740 -1.839 0.212 1.387 0.154 C1 MVL 1 MVL N10 N10 N 0 1 Y N N 26.868 46.843 -2.416 0.998 0.288 0.239 N10 MVL 2 MVL C3 C3 C 0 1 N N S 27.798 46.818 0.306 -1.748 -0.043 0.601 C3 MVL 3 MVL C4 C4 C 0 1 N N R 27.520 48.123 -0.496 -0.953 -1.116 -0.160 C4 MVL 4 MVL C5 C5 C 0 1 N N R 26.445 47.968 -1.569 0.507 -1.090 0.306 C5 MVL 5 MVL C6 C6 C 0 1 N N N 26.124 49.241 -2.354 1.352 -1.981 -0.606 C6 MVL 6 MVL C7 C7 C 0 1 Y N N 27.612 45.584 -4.000 2.259 2.060 0.166 C7 MVL 7 MVL C8 C8 C 0 1 Y N N 27.156 46.831 -3.752 2.293 0.714 0.248 C8 MVL 8 MVL N1 N1 N 0 1 Y N N 27.746 44.939 -2.821 0.973 2.441 0.110 N1 MVL 9 MVL O3 O3 O 0 1 N N N 29.206 46.659 0.477 -3.143 -0.205 0.338 O3 MVL 10 MVL O2 O2 O 0 1 N N N 27.979 44.363 0.013 -1.760 1.568 -1.209 O2 MVL 11 MVL O4 O4 O 0 1 N Y N 27.123 49.202 0.364 -1.517 -2.402 0.105 O4 MVL 12 MVL C2 C2 C 0 1 N N R 27.264 45.536 -0.363 -1.298 1.344 0.124 C2 MVL 13 MVL O6 O6 O 0 1 N N N 27.189 49.594 -3.224 2.691 -2.035 -0.112 O6 MVL 14 MVL H2 H2 H 0 1 N N N 26.211 45.423 -0.067 -1.701 2.110 0.787 H2 MVL 15 MVL H5 H5 H 0 1 N N N 25.520 47.668 -1.055 0.569 -1.450 1.333 H5 MVL 16 MVL H8 H8 H 0 1 N N N 27.043 47.642 -4.456 3.176 0.094 0.308 H8 MVL 17 MVL H3 H3 H 0 1 N N N 27.316 46.916 1.290 -1.565 -0.145 1.671 H3 MVL 18 MVL H4 H4 H 0 1 N N N 28.457 48.401 -1.002 -0.999 -0.912 -1.229 H4 MVL 19 MVL HA HA H 0 1 N N N 29.378 45.863 0.966 -3.705 0.441 0.787 HA MVL 20 MVL HB HB H 0 1 N N N 26.962 49.980 -0.157 -2.442 -2.489 -0.163 HB MVL 21 MVL H6C1 H6C1 H 0 0 N N N 25.215 49.074 -2.950 0.931 -2.986 -0.624 H6C1 MVL 22 MVL H6C2 H6C2 H 0 0 N N N 25.952 50.065 -1.646 1.353 -1.570 -1.616 H6C2 MVL 23 MVL H6 H6 H 0 1 N N N 26.963 50.386 -3.697 3.285 -2.583 -0.642 H6 MVL 24 MVL H7 H7 H 0 1 N N N 27.832 45.173 -4.974 3.117 2.716 0.149 H7 MVL 25 MVL HC HC H 0 1 N N N 27.936 44.254 0.956 -1.494 2.421 -1.580 HC MVL 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal MVL C1 N10 SING Y N 1 MVL C1 N1 DOUB Y N 2 MVL C1 C2 SING N N 3 MVL N10 C5 SING N N 4 MVL N10 C8 SING Y N 5 MVL C3 C4 SING N N 6 MVL C3 O3 SING N N 7 MVL C3 C2 SING N N 8 MVL C4 C5 SING N N 9 MVL C4 O4 SING N N 10 MVL C5 C6 SING N N 11 MVL C6 O6 SING N N 12 MVL C7 C8 DOUB Y N 13 MVL C7 N1 SING Y N 14 MVL O2 C2 SING N N 15 MVL C2 H2 SING N N 16 MVL C5 H5 SING N N 17 MVL C8 H8 SING N N 18 MVL C3 H3 SING N N 19 MVL C4 H4 SING N N 20 MVL O3 HA SING N N 21 MVL O4 HB SING N N 22 MVL C6 H6C1 SING N N 23 MVL C6 H6C2 SING N N 24 MVL O6 H6 SING N N 25 MVL C7 H7 SING N N 26 MVL O2 HC SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor MVL SMILES ACDLabs 12.01 "n1ccn2c1C(O)C(O)C(O)C2CO" MVL InChI InChI 1.03 "InChI=1S/C8H12N2O4/c11-3-4-5(12)6(13)7(14)8-9-1-2-10(4)8/h1-2,4-7,11-14H,3H2/t4-,5-,6+,7+/m1/s1" MVL InChIKey InChI 1.03 RZRDQZQPTISYKY-JWXFUTCRSA-N MVL SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@H](O)c2nccn12" MVL SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)c2nccn12" MVL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cn2c(n1)[C@H]([C@H]([C@@H]([C@H]2CO)O)O)O" MVL SMILES "OpenEye OEToolkits" 1.7.6 "c1cn2c(n1)C(C(C(C2CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MVL "SYSTEMATIC NAME" ACDLabs 12.01 "(5R,6R,7S,8R)-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-6,7,8-triol" MVL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(5R,6R,7S,8R)-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-6,7,8-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site MVL "Create component" 2008-01-25 EBI MVL "Modify aromatic_flag" 2011-06-04 RCSB MVL "Modify descriptor" 2011-06-04 RCSB MVL "Other modification" 2013-01-25 EBI MVL "Other modification" 2014-05-16 EBI MVL "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id MVL _pdbx_chem_comp_synonyms.name Mannoimidazole _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##